FFCP PHASE1:Mm9::chr6:57775138..57775160,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232023|HGNC=|MCL_coexpression_id=22|UniProt=Q8R1C3|association_with_transcript=0bp_to_ENSMUST00000114297,ENSMUST00000145608_5end|description=CAGE_peak_2_at_Vopp1_5end|id=chr6:57775138..57775160,-|ontology_enrichment_celltype=CL:0000117!1.45e-13!23;CL:0000337!1.45e-13!23;CL:0000221!5.99e-13!44;CL:0000133!5.99e-13!44;CL:0000540!9.09e-13!33;CL:0000047!9.09e-13!33;CL:0000031!9.09e-13!33;CL:0000404!9.09e-13!33;CL:0002319!1.14e-12!43;CL:0000055!1.49e-12!50;CL:0000393!3.21e-12!39;CL:0000211!3.21e-12!39;CL:0002321!2.05e-09!70;CL:0000220!2.05e-09!70|ontology_enrichment_celltype_v019_2=CL:0000117,8.71e-14,23;CL:0000337,8.71e-14,23;CL:0000221,4.75e-13,44;CL:0000133,4.75e-13,44;CL:0000540,5.66e-13,33;CL:0000047,5.66e-13,33;CL:0000031,5.66e-13,33;CL:0000404,5.66e-13,33;CL:0002319,9.15e-13,43;CL:0000393,2.04e-12,39;CL:0000211,2.04e-12,39;CL:0002321,5.78e-10,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.65e-19!75;UBERON:0001016!2.65e-19!75;UBERON:0001017!4.74e-19!73;UBERON:0005743!4.74e-19!73;UBERON:0002020!1.77e-17!34;UBERON:0000033!7.85e-17!63;UBERON:0001049!2.60e-16!52;UBERON:0005068!2.60e-16!52;UBERON:0006241!2.60e-16!52;UBERON:0007135!2.60e-16!52;UBERON:0004121!5.77e-16!102;UBERON:0000924!5.77e-16!102;UBERON:0006601!5.77e-16!102;UBERON:0003056!1.85e-15!49;UBERON:0002346!2.89e-15!71;UBERON:0003075!2.89e-15!71;UBERON:0007284!2.89e-15!71;UBERON:0002791!2.55e-14!29;UBERON:0003528!2.55e-14!29;UBERON:0001893!2.55e-14!29;UBERON:0000955!4.41e-14!50;UBERON:0006238!4.41e-14!50;UBERON:0002616!1.01e-13!49;UBERON:0003080!1.52e-13!40;UBERON:0002780!3.13e-13!39;UBERON:0001890!3.13e-13!39;UBERON:0006240!3.13e-13!39;UBERON:0000956!4.64e-10!21;UBERON:0001869!4.64e-10!21;UBERON:0000203!4.64e-10!21;UBERON:0007811!4.20e-08!86;UBERON:0002619!8.02e-08!17;UBERON:0000153!1.33e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.42e-19,75;UBERON:0001017,4.37e-19,73;UBERON:0002346,3.64e-18,64;UBERON:0003075,3.64e-18,64;UBERON:0007284,3.64e-18,64;UBERON:0004121,4.69e-18,95;UBERON:0000924,4.69e-18,95;UBERON:0006601,4.69e-18,95;UBERON:0002020,9.04e-18,34;UBERON:0000073,8.58e-17,54;UBERON:0001049,2.14e-16,52;UBERON:0005068,2.14e-16,52;UBERON:0006241,2.14e-16,52;UBERON:0007135,2.14e-16,52;UBERON:0003056,1.58e-15,49;UBERON:0010371,5.59e-15,73;UBERON:0003528,1.48e-14,29;UBERON:0002791,1.48e-14,29;UBERON:0001893,1.48e-14,29;UBERON:0000955,9.74e-14,47;UBERON:0006238,9.74e-14,47;UBERON:0003080,1.42e-13,40;UBERON:0002616,2.24e-13,46;UBERON:0002780,2.96e-13,39;UBERON:0001890,2.96e-13,39;UBERON:0006240,2.96e-13,39;UBERON:0010314,1.14e-11,92;UBERON:0000956,3.24e-10,21;UBERON:0001869,3.24e-10,21;UBERON:0000203,3.24e-10,21;UBERON:0002619,6.14e-08,17|phase1_expression=2.88267924788629,3.14077866875425,5.45999087267443,1.81478526784098,1.00179145989269,3.18970616632591,3.03696432774183,2.1950964985068,0.563154888606667,0.468129052643987,0.856089841127525,0.319088635981346,2.22560948910567,2.09808965805594,5.3297561890506,3.84703008040669,9.09430441566591,0.315462165358238,0.411343300817216,0.84877930359606,1.36069264241712,0,0,0.799962113967033,1.60586496747019,6.31655160526522,3.4460959692726,2.37018355954478,2.28028103347649,2.77233142735924,2.66076612786366,0.635030673459631,0.61506478758457,0,1.73310971850765,0.997407872150954,1.42918549383658,2.09265815368454,0.7813353445238,1.0470474879476,0.588231488031014,1.36609096991689,0.971020706062307,1.76255545165808,2.73717714292689,2.9367480345869,3.12956537739216,1.52617609466313,2.85592037554813,3.69416808241138,2.37976916763116,1.43752564364972,0.335565212115473,0,1.68046899571232,1.02903774414379,1.71920063963254,3.09403255366465,20.2316460859598,14.8117474196169,24.0855933332348,3.04960078862219,4.4464739805557,1.3498495759221,1.97773272513395,1.4209602298922,4.79360176829448,0.768436610643109,12.4427534770173,12.1505344498522,11.1472229516232,5.99867067247988,6.18431914664518,9.30930074033651,12.4599112323707,15.6267193723704,1.10115880999389,5.87361755191863,3.99376986466233,15.8263545276233,25.5250525650723,19.7947080811569,3.35019598801657,5.06486349028512,4.73674568108111,8.83885756421003,9.11178757114259,17.5215479075783,2.95332153999418,2.04043212288321,2.89864488701678,2.58127163094416,0,0.539703191637817,0,0,0.983110940922263,2.55645483867087,1.29893002301434,2.12003744706204,3.09855523508697,0,2.54805239706646,0,4.5463118612355,4.30711771307668,2.52762222507392,0.79928715803342,0.776813650941515,1.92974780784272,2.4287945747259,1.21786191324856,0.461230994512117,1.20578112442098,1.05829836422134,1.0053327306374,0.494389935468748,1.15679485535929,2.65383165584962,4.04417124868523,4.63767188766826,1.45462575940567,0,2.34224637609238,2.93225389538837,1.53274233125155,2.87556298814209,0.599902730993408,2.03312363316904,3.2953940669061,3.20250421973039,11.1832373380449,3.99795936442236,3.3243009452943,2.49345653471472,4.86723789203273,2.74966282395854,2.23932547098167,0.505445516867349,3.57751155007006,1.5614453155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| ||
|EntrezGene=232023 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q8R1C3 | |||
|association_with_transcript=0bp_to_ENSMUST00000114297,ENSMUST00000145608_5end | |||
|description=CAGE_peak_2_at_Vopp1_5end | |||
|id=chr6:57775138..57775160,- | |||
|ontology_enrichment_celltype=CL:0000117!1.45e-13!23;CL:0000337!1.45e-13!23;CL:0000221!5.99e-13!44;CL:0000133!5.99e-13!44;CL:0000540!9.09e-13!33;CL:0000047!9.09e-13!33;CL:0000031!9.09e-13!33;CL:0000404!9.09e-13!33;CL:0002319!1.14e-12!43;CL:0000055!1.49e-12!50;CL:0000393!3.21e-12!39;CL:0000211!3.21e-12!39;CL:0002321!2.05e-09!70;CL:0000220!2.05e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.71e-14,23;CL:0000337,8.71e-14,23;CL:0000221,4.75e-13,44;CL:0000133,4.75e-13,44;CL:0000540,5.66e-13,33;CL:0000047,5.66e-13,33;CL:0000031,5.66e-13,33;CL:0000404,5.66e-13,33;CL:0002319,9.15e-13,43;CL:0000393,2.04e-12,39;CL:0000211,2.04e-12,39;CL:0002321,5.78e-10,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.65e-19!75;UBERON:0001016!2.65e-19!75;UBERON:0001017!4.74e-19!73;UBERON:0005743!4.74e-19!73;UBERON:0002020!1.77e-17!34;UBERON:0000033!7.85e-17!63;UBERON:0001049!2.60e-16!52;UBERON:0005068!2.60e-16!52;UBERON:0006241!2.60e-16!52;UBERON:0007135!2.60e-16!52;UBERON:0004121!5.77e-16!102;UBERON:0000924!5.77e-16!102;UBERON:0006601!5.77e-16!102;UBERON:0003056!1.85e-15!49;UBERON:0002346!2.89e-15!71;UBERON:0003075!2.89e-15!71;UBERON:0007284!2.89e-15!71;UBERON:0002791!2.55e-14!29;UBERON:0003528!2.55e-14!29;UBERON:0001893!2.55e-14!29;UBERON:0000955!4.41e-14!50;UBERON:0006238!4.41e-14!50;UBERON:0002616!1.01e-13!49;UBERON:0003080!1.52e-13!40;UBERON:0002780!3.13e-13!39;UBERON:0001890!3.13e-13!39;UBERON:0006240!3.13e-13!39;UBERON:0000956!4.64e-10!21;UBERON:0001869!4.64e-10!21;UBERON:0000203!4.64e-10!21;UBERON:0007811!4.20e-08!86;UBERON:0002619!8.02e-08!17;UBERON:0000153!1.33e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.42e-19,75;UBERON:0001017,4.37e-19,73;UBERON:0002346,3.64e-18,64;UBERON:0003075,3.64e-18,64;UBERON:0007284,3.64e-18,64;UBERON:0004121,4.69e-18,95;UBERON:0000924,4.69e-18,95;UBERON:0006601,4.69e-18,95;UBERON:0002020,9.04e-18,34;UBERON:0000073,8.58e-17,54;UBERON:0001049,2.14e-16,52;UBERON:0005068,2.14e-16,52;UBERON:0006241,2.14e-16,52;UBERON:0007135,2.14e-16,52;UBERON:0003056,1.58e-15,49;UBERON:0010371,5.59e-15,73;UBERON:0003528,1.48e-14,29;UBERON:0002791,1.48e-14,29;UBERON:0001893,1.48e-14,29;UBERON:0000955,9.74e-14,47;UBERON:0006238,9.74e-14,47;UBERON:0003080,1.42e-13,40;UBERON:0002616,2.24e-13,46;UBERON:0002780,2.96e-13,39;UBERON:0001890,2.96e-13,39;UBERON:0006240,2.96e-13,39;UBERON:0010314,1.14e-11,92;UBERON:0000956,3.24e-10,21;UBERON:0001869,3.24e-10,21;UBERON:0000203,3.24e-10,21;UBERON:0002619,6.14e-08,17 | |||
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| |||
|short_description=p2@Vopp1 | |||
}} |
Revision as of 10:23, 14 September 2013
Short description: | p2@Vopp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vopp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000114297, ENSMUST00000145608_5end |
EntrezGene: | Vopp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.71e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.71e-14 | 23 |
ectodermal cell | 4.75e-13 | 44 |
neurectodermal cell | 4.75e-13 | 44 |
neuron | 5.66e-13 | 33 |
neuronal stem cell | 5.66e-13 | 33 |
neuroblast | 5.66e-13 | 33 |
electrically signaling cell | 5.66e-13 | 33 |
neural cell | 9.15e-13 | 43 |
electrically responsive cell | 2.04e-12 | 39 |
electrically active cell | 2.04e-12 | 39 |
embryonic cell | 5.78e-10 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.42e-19 | 75 |
central nervous system | 4.37e-19 | 73 |
neurectoderm | 3.64e-18 | 64 |
neural plate | 3.64e-18 | 64 |
presumptive neural plate | 3.64e-18 | 64 |
ectoderm-derived structure | 4.69e-18 | 95 |
ectoderm | 4.69e-18 | 95 |
presumptive ectoderm | 4.69e-18 | 95 |
gray matter | 9.04e-18 | 34 |
regional part of nervous system | 8.58e-17 | 54 |
neural tube | 2.14e-16 | 52 |
neural rod | 2.14e-16 | 52 |
future spinal cord | 2.14e-16 | 52 |
neural keel | 2.14e-16 | 52 |
pre-chordal neural plate | 1.58e-15 | 49 |
ecto-epithelium | 5.59e-15 | 73 |
brain grey matter | 1.48e-14 | 29 |
regional part of telencephalon | 1.48e-14 | 29 |
telencephalon | 1.48e-14 | 29 |
brain | 9.74e-14 | 47 |
future brain | 9.74e-14 | 47 |
anterior neural tube | 1.42e-13 | 40 |
regional part of brain | 2.24e-13 | 46 |
regional part of forebrain | 2.96e-13 | 39 |
forebrain | 2.96e-13 | 39 |
future forebrain | 2.96e-13 | 39 |
structure with developmental contribution from neural crest | 1.14e-11 | 92 |
cerebral cortex | 3.24e-10 | 21 |
cerebral hemisphere | 3.24e-10 | 21 |
pallium | 3.24e-10 | 21 |
regional part of cerebral cortex | 6.14e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.