FFCP PHASE1:Mm9::chr12:74018859..74018929,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=75801|HGNC=|UniProt=Q9CTN5|association_with_transcript=0bp_to_ENSMUST00000044000_5end|description=CAGE_peak_1_at_4930447C04Rik_5end|id=chr12:74018859..74018929,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.53e-14!63;UBERON:0003056!4.33e-13!49;UBERON:0002346!8.43e-12!71;UBERON:0003075!8.43e-12!71;UBERON:0007284!8.43e-12!71;UBERON:0001049!7.41e-11!52;UBERON:0005068!7.41e-11!52;UBERON:0006241!7.41e-11!52;UBERON:0007135!7.41e-11!52;UBERON:0000955!8.38e-11!50;UBERON:0006238!8.38e-11!50;UBERON:0002616!1.05e-10!49;UBERON:0000153!6.78e-10!94;UBERON:0003080!1.89e-09!40;UBERON:0007811!6.63e-09!86;UBERON:0002780!6.80e-09!39;UBERON:0001890!6.80e-09!39;UBERON:0006240!6.80e-09!39;UBERON:0004121!5.11e-08!102;UBERON:0000924!5.11e-08!102;UBERON:0006601!5.11e-08!102;UBERON:0001017!1.46e-07!73;UBERON:0005743!1.46e-07!73;UBERON:0000073!3.16e-07!75;UBERON:0001016!3.16e-07!75;UBERON:0001894!4.34e-07!10;UBERON:0006222!4.34e-07!10;UBERON:0000991!5.05e-07!18;UBERON:0005564!5.05e-07!18|ontology_enrichment_uberon_v019_2=UBERON:0003056,7.46e-14,49;UBERON:0002346,4.60e-13,64;UBERON:0003075,4.60e-13,64;UBERON:0007284,4.60e-13,64;UBERON:0000073,1.41e-11,54;UBERON:0001049,1.50e-10,52;UBERON:0005068,1.50e-10,52;UBERON:0006241,1.50e-10,52;UBERON:0007135,1.50e-10,52;UBERON:0010371,1.72e-10,73;UBERON:0003080,1.02e-09,40;UBERON:0010314,3.67e-09,92;UBERON:0002780,4.30e-09,39;UBERON:0001890,4.30e-09,39;UBERON:0006240,4.30e-09,39;UBERON:0000955,5.86e-09,47;UBERON:0006238,5.86e-09,47;UBERON:0002616,7.72e-09,46;UBERON:0001894,4.95e-08,10;UBERON:0006222,4.95e-08,10;UBERON:0000991,1.29e-07,18;UBERON:0005564,1.29e-07,18;UBERON:0000473,2.94e-07,14;UBERON:0001017,4.23e-07,73;UBERON:0004176,4.26e-07,17;UBERON:0009196,4.26e-07,17;UBERON:0009117,4.26e-07,17;UBERON:0004121,6.70e-07,95;UBERON:0000924,6.70e-07,95;UBERON:0006601,6.70e-07,95|phase1_expression=4.80446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,5.18764069921526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.55994568650145,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,0.633831403506179,0.677689064138264,0,0,0,0,0.299600110518405,0,0.207379224616955,0.405017814995072,0.210324961351382,2.28520787523043,3.3130281142742,0.122490799214954,0.191690942036473,0,4.40463523997555,9.06580100404833,8.75557239560588,1.05509030184155,1.46380229763855,0.52091337055676,3.35019598801657,10.1297269805702,4.12555268997387,2.94628585473668,3.84403538157578,2.42319279572891,0.227178579999552,0.226714680320357,0,0,0,0.539703191637817,0,0,0.702222100658759,0,0,0,0.563373679106722,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,1.38788261412909,1.21786191324856,1.38369298353635,0.904335843315735,1.88141931417128,0,0.494389935468748,1.44599356919912,0,2.75003644910596,0.441683036920787,0.969750506270444,0,0.878342391034642,0.83778682725382,0,1.07833612055328,2.39961092397363,2.03312363316904,13.7807388252437,7.77751024791665,3.14135880282161,14.9488915365358,15.3429274398198,11.8439185398949,8.4365456795234,4.3790926455636,0.497627882440372,0.252722758433675,2.31486041475121,6.11566081924707,5.0578462975364,3.96136685571768,6.0281927134286,7.89223390155403,6.40568601424249,4.77878795254617,8.01980449290949,1.07783996466421,4.34943984385984,3.69497360744293,1.97276159184817,4.44875598760957,3.48252166522167,1.85203922767149,6.36909653819178,1.40442637462647,0.51469581422943,0.852490498186778,3.93538967817454,2.11073453982987,3.06105504483725,1.65721314909647,2.36117078096885,1.23413690309903,1.62773761325285,0.268273401399619,1.05088808130453,0.987359099480883,0.32833492815819,0.324275238183423,0.146199987425332,0,0.134206418760372,7.99101804543684,1.13195073617213,0,0,2.55945900642281,2.78684006232526,1.80414445850931,1.00841762311671,1.11189021922435,0.760902504450237,0,0.494096864172033,0,0.397912944082302,0,0,0,0,0.569003702859245,1.25673363870702,0,0.203651327845314,0.387904974335251,0.631222379012867,0,0,0,0,0,1.83529616287703,2.16214894624523,0.899448449539415,0.811440485554012,0,0,0.287696137450811,0.324270453550071,0.274561413188081,1.43768206527355,0,0,0,0,0,0,3.97931964718018,1.30371981153621,0.169745085775188,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,8.18808008937739,11.4867452860359,0,0,0,0,0,0.238968797952552,0,0,0.404810701674894,0.292255857911312,0,1.92792789853084,0.141940085208269,2.31485284767432,7.16702621155735,0.989820737835213,0,0.728341908464944,0.302323556964751,0.754420319023592,0,0.922305443831782,0.516856586336442,0.363533729477506,0.356497378384721,0,0,0,21.4476951624886,4.86164953884538,5.43306471887569,6.64444808597936,14.1872186913819,11.0588666913284,11.1893334009442,7.91608867697958,0.23467170806371,4.87213762986786,0.220528398054962,0,1.61464426695906,0.422190474497091,0,0,0.291480836629851,7.6024373824309,0,0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| ||
|EntrezGene=75801 | |||
|HGNC= | |||
|UniProt=Q9CTN5 | |||
|association_with_transcript=0bp_to_ENSMUST00000044000_5end | |||
|description=CAGE_peak_1_at_4930447C04Rik_5end | |||
|id=chr12:74018859..74018929,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.53e-14!63;UBERON:0003056!4.33e-13!49;UBERON:0002346!8.43e-12!71;UBERON:0003075!8.43e-12!71;UBERON:0007284!8.43e-12!71;UBERON:0001049!7.41e-11!52;UBERON:0005068!7.41e-11!52;UBERON:0006241!7.41e-11!52;UBERON:0007135!7.41e-11!52;UBERON:0000955!8.38e-11!50;UBERON:0006238!8.38e-11!50;UBERON:0002616!1.05e-10!49;UBERON:0000153!6.78e-10!94;UBERON:0003080!1.89e-09!40;UBERON:0007811!6.63e-09!86;UBERON:0002780!6.80e-09!39;UBERON:0001890!6.80e-09!39;UBERON:0006240!6.80e-09!39;UBERON:0004121!5.11e-08!102;UBERON:0000924!5.11e-08!102;UBERON:0006601!5.11e-08!102;UBERON:0001017!1.46e-07!73;UBERON:0005743!1.46e-07!73;UBERON:0000073!3.16e-07!75;UBERON:0001016!3.16e-07!75;UBERON:0001894!4.34e-07!10;UBERON:0006222!4.34e-07!10;UBERON:0000991!5.05e-07!18;UBERON:0005564!5.05e-07!18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,7.46e-14,49;UBERON:0002346,4.60e-13,64;UBERON:0003075,4.60e-13,64;UBERON:0007284,4.60e-13,64;UBERON:0000073,1.41e-11,54;UBERON:0001049,1.50e-10,52;UBERON:0005068,1.50e-10,52;UBERON:0006241,1.50e-10,52;UBERON:0007135,1.50e-10,52;UBERON:0010371,1.72e-10,73;UBERON:0003080,1.02e-09,40;UBERON:0010314,3.67e-09,92;UBERON:0002780,4.30e-09,39;UBERON:0001890,4.30e-09,39;UBERON:0006240,4.30e-09,39;UBERON:0000955,5.86e-09,47;UBERON:0006238,5.86e-09,47;UBERON:0002616,7.72e-09,46;UBERON:0001894,4.95e-08,10;UBERON:0006222,4.95e-08,10;UBERON:0000991,1.29e-07,18;UBERON:0005564,1.29e-07,18;UBERON:0000473,2.94e-07,14;UBERON:0001017,4.23e-07,73;UBERON:0004176,4.26e-07,17;UBERON:0009196,4.26e-07,17;UBERON:0009117,4.26e-07,17;UBERON:0004121,6.70e-07,95;UBERON:0000924,6.70e-07,95;UBERON:0006601,6.70e-07,95 | |||
|phase1_expression=4.80446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,5.18764069921526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.194429899074283,0.55994568650145,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,0.633831403506179,0.677689064138264,0,0,0,0,0.299600110518405,0,0.207379224616955,0.405017814995072,0.210324961351382,2.28520787523043,3.3130281142742,0.122490799214954,0.191690942036473,0,4.40463523997555,9.06580100404833,8.75557239560588,1.05509030184155,1.46380229763855,0.52091337055676,3.35019598801657,10.1297269805702,4.12555268997387,2.94628585473668,3.84403538157578,2.42319279572891,0.227178579999552,0.226714680320357,0,0,0,0.539703191637817,0,0,0.702222100658759,0,0,0,0.563373679106722,0,0,0,0,0,0,0.45673551887624,0,0.148442139064825,1.38788261412909,1.21786191324856,1.38369298353635,0.904335843315735,1.88141931417128,0,0.494389935468748,1.44599356919912,0,2.75003644910596,0.441683036920787,0.969750506270444,0,0.878342391034642,0.83778682725382,0,1.07833612055328,2.39961092397363,2.03312363316904,13.7807388252437,7.77751024791665,3.14135880282161,14.9488915365358,15.3429274398198,11.8439185398949,8.4365456795234,4.3790926455636,0.497627882440372,0.252722758433675,2.31486041475121,6.11566081924707,5.0578462975364,3.96136685571768,6.0281927134286,7.89223390155403,6.40568601424249,4.77878795254617,8.01980449290949,1.07783996466421,4.34943984385984,3.69497360744293,1.97276159184817,4.44875598760957,3.48252166522167,1.85203922767149,6.36909653819178,1.40442637462647,0.51469581422943,0.852490498186778,3.93538967817454,2.11073453982987,3.06105504483725,1.65721314909647,2.36117078096885,1.23413690309903,1.62773761325285,0.268273401399619,1.05088808130453,0.987359099480883,0.32833492815819,0.324275238183423,0.146199987425332,0,0.134206418760372,7.99101804543684,1.13195073617213,0,0,2.55945900642281,2.78684006232526,1.80414445850931,1.00841762311671,1.11189021922435,0.760902504450237,0,0.494096864172033,0,0.397912944082302,0,0,0,0,0.569003702859245,1.25673363870702,0,0.203651327845314,0.387904974335251,0.631222379012867,0,0,0,0,0,1.83529616287703,2.16214894624523,0.899448449539415,0.811440485554012,0,0,0.287696137450811,0.324270453550071,0.274561413188081,1.43768206527355,0,0,0,0,0,0,3.97931964718018,1.30371981153621,0.169745085775188,0,0,0.238043640886014,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0,0.275936746304732,8.18808008937739,11.4867452860359,0,0,0,0,0,0.238968797952552,0,0,0.404810701674894,0.292255857911312,0,1.92792789853084,0.141940085208269,2.31485284767432,7.16702621155735,0.989820737835213,0,0.728341908464944,0.302323556964751,0.754420319023592,0,0.922305443831782,0.516856586336442,0.363533729477506,0.356497378384721,0,0,0,21.4476951624886,4.86164953884538,5.43306471887569,6.64444808597936,14.1872186913819,11.0588666913284,11.1893334009442,7.91608867697958,0.23467170806371,4.87213762986786,0.220528398054962,0,1.61464426695906,0.422190474497091,0,0,0.291480836629851,7.6024373824309,0,0.82554747185289,0.185194527369712,0.565105371014073,0,0,3.39956859987711,2.09927178485487,2.07299960706636,0,2.84702394223022,1.42323626988794,1.40406943068342,1.46361807210128,1.31017538247707,1.07891477107857,0.495920734352016,0,0.129614973291793,0.621339313086926,12.4012446510522,7.027277664067,7.61109056102649,13.0282296190512,4.90807329215378,7.60302564708502,7.04143431874524,12.6298253298632,27.9974449616648,26.8158374116867,16.4177103566983,0.316011120628178,3.04087822935246,3.69759445793378,1.94881234466693,1.25318686967237,0.39736270956253,1.20195449519969,1.32920574457119,0.302899349844443,0.533447646584999,0.403304740547362,0.38983152295901,0.288635524920988,0.116876902181569,0.906921534460845,18.4248341300474,16.0587803330961,16.6205770200438,0.19318959403219,0.563047426353546,0.549454872801795,0,0,7.90652579663893,2.76195141904306,6.87474616127276,4.46818274093588,2.74033007908257,7.55393897389701,6.07520250208625,4.05289082901798,8.60970577069989,6.73088405277366,1.3492355185943,5.1873233542134,4.09760653809922,4.132814190161,2.72497111416377,1.2869045591501,2.44471400581777,3.29656091582231,2.88827288632634,2.52697211763797,4.56262739802432,3.9611531691076,4.775716880964,3.39333307745807,3.38869266838118,4.76293691283074,1.50649623728312,3.27945674788299,2.88460130562315,3.09117732282234,6.85738504770831,4.61437096014278,4.05341522910446,4.65108533223451,4.04670335785922,3.21535509988371,4.20734337607377,6.05060336307039,5.02475221229689,2.24456908663095,4.1522256343461,3.05363895364247,2.04615521584845,3.71848418846318,2.89359916471712,1.99848462350357,2.8071793013449,2.36358159453128,3.44318997723918,1.32354851471709,1.85494268496337 | |||
|short_description=p1@4930447C04Rik | |||
}} |
Revision as of 23:08, 12 September 2013
Short description: | p1@4930447C04Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_4930447C04Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000044000_5end |
EntrezGene: | 4930447C04Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 7.46e-14 | 49 |
neurectoderm | 4.60e-13 | 64 |
neural plate | 4.60e-13 | 64 |
presumptive neural plate | 4.60e-13 | 64 |
regional part of nervous system | 1.41e-11 | 54 |
neural tube | 1.50e-10 | 52 |
neural rod | 1.50e-10 | 52 |
future spinal cord | 1.50e-10 | 52 |
neural keel | 1.50e-10 | 52 |
ecto-epithelium | 1.72e-10 | 73 |
anterior neural tube | 1.02e-09 | 40 |
structure with developmental contribution from neural crest | 3.67e-09 | 92 |
regional part of forebrain | 4.30e-09 | 39 |
forebrain | 4.30e-09 | 39 |
future forebrain | 4.30e-09 | 39 |
brain | 5.86e-09 | 47 |
future brain | 5.86e-09 | 47 |
regional part of brain | 7.72e-09 | 46 |
diencephalon | 4.95e-08 | 10 |
future diencephalon | 4.95e-08 | 10 |
gonad | 1.29e-07 | 18 |
gonad primordium | 1.29e-07 | 18 |
testis | 2.94e-07 | 14 |
central nervous system | 4.23e-07 | 73 |
external genitalia | 4.26e-07 | 17 |
indifferent external genitalia | 4.26e-07 | 17 |
indifferent gonad | 4.26e-07 | 17 |
ectoderm-derived structure | 6.70e-07 | 95 |
ectoderm | 6.70e-07 | 95 |
presumptive ectoderm | 6.70e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.