FFCP PHASE1:Mm9::chr19:4756527..4756556,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66704|HGNC=|MCL_coexpression_id=0|UniProt=Q8VE92,Q3TY21|association_with_transcript=2bp_to_ENSMUST00000036744,NM_025717,uc008gaq.1,uc008gar.1,uc008gas.1,uc012bgk.1_5end|description=CAGE_peak_2_at_Rbm4b_5end|id=chr19:4756527..4756556,+|ontology_enrichment_celltype=CL:0000540!1.89e-17!33;CL:0000047!1.89e-17!33;CL:0000031!1.89e-17!33;CL:0000404!1.89e-17!33;CL:0000393!7.84e-15!39;CL:0000211!7.84e-15!39;CL:0000221!3.46e-14!44;CL:0000133!3.46e-14!44;CL:0002319!4.32e-14!43;CL:0000117!7.12e-14!23;CL:0000337!7.12e-14!23;CL:0000055!1.37e-12!50;CL:0002321!1.63e-08!70;CL:0000220!1.63e-08!70|ontology_enrichment_celltype_v019_2=CL:0000540,1.89e-17,33;CL:0000047,1.89e-17,33;CL:0000031,1.89e-17,33;CL:0000404,1.89e-17,33;CL:0000393,7.83e-15,39;CL:0000211,7.83e-15,39;CL:0000221,3.45e-14,44;CL:0000133,3.45e-14,44;CL:0002319,4.32e-14,43;CL:0000117,7.11e-14,23;CL:0000337,7.11e-14,23;CL:0002321,1.58e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.11e-18!73;UBERON:0005743!2.11e-18!73;UBERON:0000073!2.72e-17!75;UBERON:0001016!2.72e-17!75;UBERON:0004121!3.48e-14!102;UBERON:0000924!3.48e-14!102;UBERON:0006601!3.48e-14!102;UBERON:0002346!3.83e-13!71;UBERON:0003075!3.83e-13!71;UBERON:0007284!3.83e-13!71;UBERON:0000033!8.48e-12!63;UBERON:0001049!3.45e-11!52;UBERON:0005068!3.45e-11!52;UBERON:0006241!3.45e-11!52;UBERON:0007135!3.45e-11!52;UBERON:0000955!1.69e-10!50;UBERON:0006238!1.69e-10!50;UBERON:0002616!2.52e-10!49;UBERON:0000153!8.55e-10!94;UBERON:0003056!2.19e-09!49;UBERON:0007811!4.74e-09!86;UBERON:0003080!1.19e-07!40;UBERON:0002780!3.04e-07!39;UBERON:0001890!3.04e-07!39;UBERON:0006240!3.04e-07!39;UBERON:0002020!4.36e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.10e-18,73;UBERON:0001016,2.71e-17,75;UBERON:0004121,4.87e-15,95;UBERON:0000924,4.87e-15,95;UBERON:0006601,4.87e-15,95;UBERON:0002346,2.09e-14,64;UBERON:0003075,2.09e-14,64;UBERON:0007284,2.09e-14,64;UBERON:0000073,3.04e-12,54;UBERON:0010371,2.37e-11,73;UBERON:0001049,3.45e-11,52;UBERON:0005068,3.45e-11,52;UBERON:0006241,3.45e-11,52;UBERON:0007135,3.45e-11,52;UBERON:0003056,2.19e-09,49;UBERON:0000955,3.28e-09,47;UBERON:0006238,3.28e-09,47;UBERON:0002616,4.84e-09,46;UBERON:0003080,1.19e-07,40;UBERON:0010314,2.17e-07,92;UBERON:0002780,3.04e-07,39;UBERON:0001890,3.04e-07,39;UBERON:0006240,3.04e-07,39;UBERON:0002020,4.36e-07,34|phase1_expression=6.08565618998217,3.48975407639361,2.72999543633722,3.0246421130683,3.00537437967808,2.35030980676646,1.86890112476421,4.9066862907799,15.627548158835,17.0867104215055,2.22583358693156,3.03134204182278,2.56801094896809,3.84649770643589,0.666219523631325,0.809901069559304,1.39912375625629,3.15462165358238,2.4680598049033,3.81950686618227,26.5335065271338,2.48227378002213,1.82839852397255,2.23989391910769,2.75291137280604,4.01962374880514,2.15380998079537,1.939241094173,1.14014051673824,1.00812051903972,2.88249663851896,2.54012269383853,0.61506478758457,0,1.73310971850765,2.1610503896604,1.63335485009895,2.51118978442145,1.5626706890476,1.0470474879476,2.35292595212406,0.683045484958446,2.42755176515577,5.66535680890098,5.47435428585379,5.32285581268876,6.25913075478431,3.2703773457067,3.07560655828261,2.3331587888914,2.79972843250725,5.75010257459886,7.21465206048266,3.62681071005672,5.37750078627942,1.54355661621568,1.14613375975503,2.57836046138721,16.7922662513466,16.398720357433,18.3811107016792,4.74382344896785,6.22506357277798,1.3498495759221,0,1.4209602298922,3.29560121570245,4.61061966385865,18.0419925416751,14.1756235248275,17.6672967535161,5.42736870367227,8.39300455616131,21.8033622602618,18.7857123195743,23.8996884518605,8.8092704799511,7.66124028511126,7.52672012955593,15.5625819521629,14.0890971147711,14.5855743755893,8.93385596804419,7.87867654044352,7.94550888439413,6.18720029494702,7.11858403995515,12.8615617619457,2.49896437999507,2.11600368298999,5.2175607966302,5.16254326188832,4.75979933595425,8.63525106620507,2.59910566979068,7.6164570806547,7.44355426698285,3.40860645156115,6.49465011507172,5.3000936176551,4.64783285263046,5.13305909657271,5.09610479413291,0,2.38140145112336,1.77351905832569,4.04419556011827,7.65031994117702,2.07150306917737,2.82040064223167,4.3371331691534,2.43572382649713,4.38169444786511,3.46662073271032,3.76283862834255,1.88499886994513,3.70792451601561,2.02439099687876,0.884610551949874,1.29413479957927,2.42925670306433,3.39412677194655,1.86391761218122,6.44117753425404,6.0739544975902,1.53274233125155,2.15667224110656,2.99951365496704,2.28726408731516,7.9389038884556,6.40500843946077,8.79580464790051,3.82413504423008,3.3243009452943,6.64921742590592,4.05603157669394,3.25885964321012,1.8661045591514,3.0326731012041,2.10441855886474,8.19758790665033,9.42598628177239,7.92273371143537,6.0281927134286,5.71506592871154,7.81493693737584,7.40243624021858,2.58703370739016,7.76044774558232,7.37513712654495,7.9178005873777,6.1374805079721,6.95118123063995,2.43776516565517,2.46938563689532,7.16523360546575,1.4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| ||
|EntrezGene=66704 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q8VE92,Q3TY21 | |||
|association_with_transcript=2bp_to_ENSMUST00000036744,NM_025717,uc008gaq.1,uc008gar.1,uc008gas.1,uc012bgk.1_5end | |||
|description=CAGE_peak_2_at_Rbm4b_5end | |||
|id=chr19:4756527..4756556,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.89e-17!33;CL:0000047!1.89e-17!33;CL:0000031!1.89e-17!33;CL:0000404!1.89e-17!33;CL:0000393!7.84e-15!39;CL:0000211!7.84e-15!39;CL:0000221!3.46e-14!44;CL:0000133!3.46e-14!44;CL:0002319!4.32e-14!43;CL:0000117!7.12e-14!23;CL:0000337!7.12e-14!23;CL:0000055!1.37e-12!50;CL:0002321!1.63e-08!70;CL:0000220!1.63e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.89e-17,33;CL:0000047,1.89e-17,33;CL:0000031,1.89e-17,33;CL:0000404,1.89e-17,33;CL:0000393,7.83e-15,39;CL:0000211,7.83e-15,39;CL:0000221,3.45e-14,44;CL:0000133,3.45e-14,44;CL:0002319,4.32e-14,43;CL:0000117,7.11e-14,23;CL:0000337,7.11e-14,23;CL:0002321,1.58e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.11e-18!73;UBERON:0005743!2.11e-18!73;UBERON:0000073!2.72e-17!75;UBERON:0001016!2.72e-17!75;UBERON:0004121!3.48e-14!102;UBERON:0000924!3.48e-14!102;UBERON:0006601!3.48e-14!102;UBERON:0002346!3.83e-13!71;UBERON:0003075!3.83e-13!71;UBERON:0007284!3.83e-13!71;UBERON:0000033!8.48e-12!63;UBERON:0001049!3.45e-11!52;UBERON:0005068!3.45e-11!52;UBERON:0006241!3.45e-11!52;UBERON:0007135!3.45e-11!52;UBERON:0000955!1.69e-10!50;UBERON:0006238!1.69e-10!50;UBERON:0002616!2.52e-10!49;UBERON:0000153!8.55e-10!94;UBERON:0003056!2.19e-09!49;UBERON:0007811!4.74e-09!86;UBERON:0003080!1.19e-07!40;UBERON:0002780!3.04e-07!39;UBERON:0001890!3.04e-07!39;UBERON:0006240!3.04e-07!39;UBERON:0002020!4.36e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.10e-18,73;UBERON:0001016,2.71e-17,75;UBERON:0004121,4.87e-15,95;UBERON:0000924,4.87e-15,95;UBERON:0006601,4.87e-15,95;UBERON:0002346,2.09e-14,64;UBERON:0003075,2.09e-14,64;UBERON:0007284,2.09e-14,64;UBERON:0000073,3.04e-12,54;UBERON:0010371,2.37e-11,73;UBERON:0001049,3.45e-11,52;UBERON:0005068,3.45e-11,52;UBERON:0006241,3.45e-11,52;UBERON:0007135,3.45e-11,52;UBERON:0003056,2.19e-09,49;UBERON:0000955,3.28e-09,47;UBERON:0006238,3.28e-09,47;UBERON:0002616,4.84e-09,46;UBERON:0003080,1.19e-07,40;UBERON:0010314,2.17e-07,92;UBERON:0002780,3.04e-07,39;UBERON:0001890,3.04e-07,39;UBERON:0006240,3.04e-07,39;UBERON:0002020,4.36e-07,34 | |||
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| |||
|short_description=p2@Rbm4b | |||
}} |
Revision as of 17:56, 13 September 2013
Short description: | p2@Rbm4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rbm4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 2bp_to_ENSMUST00000036744, NM_025717, uc008gaq.1, uc008gar.1, uc008gas.1, uc012bgk.1_5end |
EntrezGene: | Rbm4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.89e-17 | 33 |
neuronal stem cell | 1.89e-17 | 33 |
neuroblast | 1.89e-17 | 33 |
electrically signaling cell | 1.89e-17 | 33 |
electrically responsive cell | 7.83e-15 | 39 |
electrically active cell | 7.83e-15 | 39 |
ectodermal cell | 3.45e-14 | 44 |
neurectodermal cell | 3.45e-14 | 44 |
neural cell | 4.32e-14 | 43 |
CNS neuron (sensu Vertebrata) | 7.11e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.11e-14 | 23 |
embryonic cell | 1.58e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.10e-18 | 73 |
nervous system | 2.71e-17 | 75 |
ectoderm-derived structure | 4.87e-15 | 95 |
ectoderm | 4.87e-15 | 95 |
presumptive ectoderm | 4.87e-15 | 95 |
neurectoderm | 2.09e-14 | 64 |
neural plate | 2.09e-14 | 64 |
presumptive neural plate | 2.09e-14 | 64 |
regional part of nervous system | 3.04e-12 | 54 |
ecto-epithelium | 2.37e-11 | 73 |
neural tube | 3.45e-11 | 52 |
neural rod | 3.45e-11 | 52 |
future spinal cord | 3.45e-11 | 52 |
neural keel | 3.45e-11 | 52 |
pre-chordal neural plate | 2.19e-09 | 49 |
brain | 3.28e-09 | 47 |
future brain | 3.28e-09 | 47 |
regional part of brain | 4.84e-09 | 46 |
anterior neural tube | 1.19e-07 | 40 |
structure with developmental contribution from neural crest | 2.17e-07 | 92 |
regional part of forebrain | 3.04e-07 | 39 |
forebrain | 3.04e-07 | 39 |
future forebrain | 3.04e-07 | 39 |
gray matter | 4.36e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.