FFCP PHASE1:Mm9::chr4:148892304..148892318,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67087|HGNC=|MCL_coexpression_id=108|UniProt=Q9JJN6|association_with_transcript=-26bp_to_ENSMUST00000030839_5end|description=CAGE_peak_4_at_Ctnnbip1_5end|id=chr4:148892304..148892318,+|ontology_enrichment_celltype=CL:0000117!1.52e-11!23;CL:0000337!1.52e-11!23;CL:0000221!8.48e-11!44;CL:0000133!8.48e-11!44;CL:0000540!1.02e-10!33;CL:0000047!1.02e-10!33;CL:0000031!1.02e-10!33;CL:0000404!1.02e-10!33;CL:0002319!1.56e-10!43;CL:0000393!1.65e-07!39;CL:0000211!1.65e-07!39;CL:0000055!3.57e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.44e-14,23;CL:0000337,7.44e-14,23;CL:0000221,3.76e-13,44;CL:0000133,3.76e-13,44;CL:0002319,7.98e-13,43;CL:0000540,8.24e-13,33;CL:0000047,8.24e-13,33;CL:0000031,8.24e-13,33;CL:0000404,8.24e-13,33;CL:0000393,5.07e-09,39;CL:0000211,5.07e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.34e-12!73;UBERON:0005743!1.34e-12!73;UBERON:0000073!8.15e-12!75;UBERON:0001016!8.15e-12!75;UBERON:0001049!1.15e-09!52;UBERON:0005068!1.15e-09!52;UBERON:0006241!1.15e-09!52;UBERON:0007135!1.15e-09!52;UBERON:0004121!1.24e-09!102;UBERON:0000924!1.24e-09!102;UBERON:0006601!1.24e-09!102;UBERON:0003056!2.44e-09!49;UBERON:0002346!3.60e-09!71;UBERON:0003075!3.60e-09!71;UBERON:0007284!3.60e-09!71;UBERON:0002020!7.25e-09!34;UBERON:0002780!1.00e-08!39;UBERON:0001890!1.00e-08!39;UBERON:0006240!1.00e-08!39;UBERON:0003080!1.05e-08!40;UBERON:0000033!2.55e-08!63;UBERON:0002616!3.52e-08!49;UBERON:0000955!6.13e-08!50;UBERON:0006238!6.13e-08!50;UBERON:0000468!3.61e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.07e-13,73;UBERON:0001016,8.58e-13,75;UBERON:0004121,6.23e-12,95;UBERON:0000924,6.23e-12,95;UBERON:0006601,6.23e-12,95;UBERON:0000073,6.59e-12,54;UBERON:0002346,9.46e-12,64;UBERON:0003075,9.46e-12,64;UBERON:0007284,9.46e-12,64;UBERON:0010371,2.56e-11,73;UBERON:0001049,1.87e-10,52;UBERON:0005068,1.87e-10,52;UBERON:0006241,1.87e-10,52;UBERON:0007135,1.87e-10,52;UBERON:0010314,9.46e-10,92;UBERON:0003056,3.06e-09,49;UBERON:0002020,3.76e-09,34;UBERON:0002780,1.31e-08,39;UBERON:0001890,1.31e-08,39;UBERON:0006240,1.31e-08,39;UBERON:0003080,1.32e-08,40;UBERON:0002616,4.55e-08,46;UBERON:0000955,1.18e-07,47;UBERON:0006238,1.18e-07,47|phase1_expression=1.76163731815273,0.697950815278722,1.36499771816861,0.60492842261366,0.500895729946347,0.671517087647559,0.700837921786577,0,0.281577444303333,0,0,0,0.171200729931206,0,0.333109761815663,0,0,0.157731082679119,0,0,0.680346321208558,0.198581902401771,1.04479915655574,0.47997726838022,0.22940928106717,0,0.430761996159075,0.861884930743556,0.380046838912748,0,0,0,0,0,0.288851619751275,1.32987716286794,0.204169356262369,0.837063261473815,0,0,0,0.683045484958446,0.971020706062307,0.251793635951155,0.304130793658544,0.367093504323363,0,3.2703773457067,1.97717564461025,1.36100929351998,1.1198913730029,5.75010257459886,0,0,0,0.514518872071894,0.286533439938757,0.515672092277442,4.85559506063035,2.64495489636016,1.26766280701236,0.677689064138264,0.889294796111139,0,0,0,0.599200221036809,3.07374644257244,4.97710139080693,4.72520784160917,4.41682418837902,3.71346279724945,3.09215957332259,3.55223317723367,2.39613677545591,4.5960939330501,1.10115880999389,2.17068474744819,1.84327839907492,4.61602007055678,4.39140689291566,1.56274011167028,1.95428099300967,1.12552522006336,1.06958773443767,4.41942878210502,3.70166370077668,2.60959224155421,0.605809546665472,0.226714680320357,0.289864488701678,0,1.3599426674155,1.07940638327563,1.94932925234301,0.448026887097336,0.702222100658759,0.170430322578058,0.259786004602869,0.70667914902068,1.54927761754349,1.28326477414318,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.22836775943812,0,0.29688427812965,1.04091196059682,0,0.691846491768175,0.753613202763113,0.705532242814229,0.753999547978053,0.247194967734374,0,0,1.13236794963186,0.220841518460394,0.969750506270444,1.86391761218122,0,0.209446706813455,0.255457055208591,0.239630249011841,0,0.127070227073065,1.04853447583376,0.915001205637253,3.76963056338593,0.521472960576829,1.27857728665165,2.0778804455956,0.973447578406546,0.916554274652847,0.622034853050465,0.758168275301024,0.210441855886474,0.780722657776222,0.689706313300419,2.52086981727489,2.10986744970001,2.10913147369116,2.69038812598185,2.62364828767241,0.258703370739016,3.44908788692548,3.02569728268511,1.75951124163949,0.219195732427575,1.11218899690239,1.0447564995665,0.411564272815887,3.78165106955137,0,0.51469581422943,0,1.44988040774851,1.40715635988658,1.2604344302271,0.946978942340841,0.393528463494808,0.771335564436891,0.465067889500816,2.14618721119695,1.86824547787471,0.987359099480883,1.64167464079095,1.4592385718254,1.90059983652932,1.3173006917463,1.47627060636409,0.420579897128254,4.42489833230923,0,1.05780226665418,1.91959425481711,0.928946687441754,1.28867461322093,0.80673409849337,1.11189021922435,0.190225626112559,0.949058123089023,0.494096864172033,1.00534083520108,0.596869416123452,0.58489226135736,0.89881940865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| ||
|EntrezGene=67087 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|UniProt=Q9JJN6 | |||
|association_with_transcript=-26bp_to_ENSMUST00000030839_5end | |||
|description=CAGE_peak_4_at_Ctnnbip1_5end | |||
|id=chr4:148892304..148892318,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.52e-11!23;CL:0000337!1.52e-11!23;CL:0000221!8.48e-11!44;CL:0000133!8.48e-11!44;CL:0000540!1.02e-10!33;CL:0000047!1.02e-10!33;CL:0000031!1.02e-10!33;CL:0000404!1.02e-10!33;CL:0002319!1.56e-10!43;CL:0000393!1.65e-07!39;CL:0000211!1.65e-07!39;CL:0000055!3.57e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.44e-14,23;CL:0000337,7.44e-14,23;CL:0000221,3.76e-13,44;CL:0000133,3.76e-13,44;CL:0002319,7.98e-13,43;CL:0000540,8.24e-13,33;CL:0000047,8.24e-13,33;CL:0000031,8.24e-13,33;CL:0000404,8.24e-13,33;CL:0000393,5.07e-09,39;CL:0000211,5.07e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.34e-12!73;UBERON:0005743!1.34e-12!73;UBERON:0000073!8.15e-12!75;UBERON:0001016!8.15e-12!75;UBERON:0001049!1.15e-09!52;UBERON:0005068!1.15e-09!52;UBERON:0006241!1.15e-09!52;UBERON:0007135!1.15e-09!52;UBERON:0004121!1.24e-09!102;UBERON:0000924!1.24e-09!102;UBERON:0006601!1.24e-09!102;UBERON:0003056!2.44e-09!49;UBERON:0002346!3.60e-09!71;UBERON:0003075!3.60e-09!71;UBERON:0007284!3.60e-09!71;UBERON:0002020!7.25e-09!34;UBERON:0002780!1.00e-08!39;UBERON:0001890!1.00e-08!39;UBERON:0006240!1.00e-08!39;UBERON:0003080!1.05e-08!40;UBERON:0000033!2.55e-08!63;UBERON:0002616!3.52e-08!49;UBERON:0000955!6.13e-08!50;UBERON:0006238!6.13e-08!50;UBERON:0000468!3.61e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.07e-13,73;UBERON:0001016,8.58e-13,75;UBERON:0004121,6.23e-12,95;UBERON:0000924,6.23e-12,95;UBERON:0006601,6.23e-12,95;UBERON:0000073,6.59e-12,54;UBERON:0002346,9.46e-12,64;UBERON:0003075,9.46e-12,64;UBERON:0007284,9.46e-12,64;UBERON:0010371,2.56e-11,73;UBERON:0001049,1.87e-10,52;UBERON:0005068,1.87e-10,52;UBERON:0006241,1.87e-10,52;UBERON:0007135,1.87e-10,52;UBERON:0010314,9.46e-10,92;UBERON:0003056,3.06e-09,49;UBERON:0002020,3.76e-09,34;UBERON:0002780,1.31e-08,39;UBERON:0001890,1.31e-08,39;UBERON:0006240,1.31e-08,39;UBERON:0003080,1.32e-08,40;UBERON:0002616,4.55e-08,46;UBERON:0000955,1.18e-07,47;UBERON:0006238,1.18e-07,47 | |||
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| |||
|short_description=p4@Ctnnbip1 | |||
}} |
Revision as of 04:28, 14 September 2013
Short description: | p4@Ctnnbip1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ctnnbip1_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | -26bp_to_ENSMUST00000030839_5end |
EntrezGene: | Ctnnbip1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.44e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.44e-14 | 23 |
ectodermal cell | 3.76e-13 | 44 |
neurectodermal cell | 3.76e-13 | 44 |
neural cell | 7.98e-13 | 43 |
neuron | 8.24e-13 | 33 |
neuronal stem cell | 8.24e-13 | 33 |
neuroblast | 8.24e-13 | 33 |
electrically signaling cell | 8.24e-13 | 33 |
electrically responsive cell | 5.07e-09 | 39 |
electrically active cell | 5.07e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.07e-13 | 73 |
nervous system | 8.58e-13 | 75 |
ectoderm-derived structure | 6.23e-12 | 95 |
ectoderm | 6.23e-12 | 95 |
presumptive ectoderm | 6.23e-12 | 95 |
regional part of nervous system | 6.59e-12 | 54 |
neurectoderm | 9.46e-12 | 64 |
neural plate | 9.46e-12 | 64 |
presumptive neural plate | 9.46e-12 | 64 |
ecto-epithelium | 2.56e-11 | 73 |
neural tube | 1.87e-10 | 52 |
neural rod | 1.87e-10 | 52 |
future spinal cord | 1.87e-10 | 52 |
neural keel | 1.87e-10 | 52 |
structure with developmental contribution from neural crest | 9.46e-10 | 92 |
pre-chordal neural plate | 3.06e-09 | 49 |
gray matter | 3.76e-09 | 34 |
regional part of forebrain | 1.31e-08 | 39 |
forebrain | 1.31e-08 | 39 |
future forebrain | 1.31e-08 | 39 |
anterior neural tube | 1.32e-08 | 40 |
regional part of brain | 4.55e-08 | 46 |
brain | 1.18e-07 | 47 |
future brain | 1.18e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.