FFCP PHASE1:Mm9::chr2:179777201..179777267,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=269397|HGNC=|MCL_coexpression_id=13|UniProt=Q8BW22|association_with_transcript=0bp_to_ENSMUST00000041126_5end|description=CAGE_peak_2_at_Ss18l1_5end|id=chr2:179777201..179777267,+|ontology_enrichment_celltype=CL:0000117!3.16e-15!23;CL:0000337!3.16e-15!23;CL:0000540!6.07e-12!33;CL:0000047!6.07e-12!33;CL:0000031!6.07e-12!33;CL:0000404!6.07e-12!33;CL:0000393!1.83e-08!39;CL:0000211!1.83e-08!39;CL:0002319!2.57e-07!43;CL:0000221!6.45e-07!44;CL:0000133!6.45e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.96e-15,23;CL:0000337,2.96e-15,23;CL:0000540,5.78e-12,33;CL:0000047,5.78e-12,33;CL:0000031,5.78e-12,33;CL:0000404,5.78e-12,33;CL:0000393,2.29e-08,39;CL:0000211,2.29e-08,39;CL:0002319,1.79e-07,43;CL:0000221,4.57e-07,44;CL:0000133,4.57e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.09e-18!34;UBERON:0001049!1.58e-17!52;UBERON:0005068!1.58e-17!52;UBERON:0006241!1.58e-17!52;UBERON:0007135!1.58e-17!52;UBERON:0001017!1.64e-17!73;UBERON:0005743!1.64e-17!73;UBERON:0000073!2.24e-17!75;UBERON:0001016!2.24e-17!75;UBERON:0002346!4.76e-17!71;UBERON:0003075!4.76e-17!71;UBERON:0007284!4.76e-17!71;UBERON:0000955!2.20e-16!50;UBERON:0006238!2.20e-16!50;UBERON:0000033!2.74e-16!63;UBERON:0002616!7.23e-16!49;UBERON:0004121!8.79e-16!102;UBERON:0000924!8.79e-16!102;UBERON:0006601!8.79e-16!102;UBERON:0003056!2.10e-15!49;UBERON:0002791!3.54e-15!29;UBERON:0003528!3.54e-15!29;UBERON:0001893!3.54e-15!29;UBERON:0003080!3.88e-14!40;UBERON:0002780!1.50e-13!39;UBERON:0001890!1.50e-13!39;UBERON:0006240!1.50e-13!39;UBERON:0007811!6.80e-12!86;UBERON:0000956!1.73e-10!21;UBERON:0001869!1.73e-10!21;UBERON:0000203!1.73e-10!21;UBERON:0000153!6.25e-10!94;UBERON:0002619!2.90e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.07e-19,54;UBERON:0002020,2.86e-18,34;UBERON:0002346,6.17e-18,64;UBERON:0003075,6.17e-18,64;UBERON:0007284,6.17e-18,64;UBERON:0001017,9.81e-18,73;UBERON:0001049,1.14e-17,52;UBERON:0005068,1.14e-17,52;UBERON:0006241,1.14e-17,52;UBERON:0007135,1.14e-17,52;UBERON:0001016,1.35e-17,75;UBERON:0004121,3.34e-16,95;UBERON:0000924,3.34e-16,95;UBERON:0006601,3.34e-16,95;UBERON:0003056,1.96e-15,49;UBERON:0003528,3.32e-15,29;UBERON:0002791,3.32e-15,29;UBERON:0001893,3.32e-15,29;UBERON:0000955,9.87e-15,47;UBERON:0006238,9.87e-15,47;UBERON:0002616,3.16e-14,46;UBERON:0010371,3.37e-14,73;UBERON:0003080,3.65e-14,40;UBERON:0002780,1.42e-13,39;UBERON:0001890,1.42e-13,39;UBERON:0006240,1.42e-13,39;UBERON:0000956,1.66e-10,21;UBERON:0001869,1.66e-10,21;UBERON:0000203,1.66e-10,21;UBERON:0010314,6.05e-09,92;UBERON:0002619,2.80e-08,17|phase1_expression=1.76163731815273,2.79180326111489,5.45999087267443,7.56160528267075,13.5241847085514,4.36486106970913,1.63528848416868,1.80772652818207,2.111830832275,3.27690336850791,1.71217968225505,1.43589886191606,1.88320802924326,1.31130603628496,0.666219523631325,1.21485160433896,0.699561878128147,2.83915948822414,3.01651753932625,4.2438965179803,3.99703463710028,1.19149141441062,1.30599894569468,1.91990907352088,1.83527424853736,1.72269589234506,3.01533397311352,1.72376986148711,3.42042155021473,1.76421090831952,1.77384408524244,0.635030673459631,1.23012957516914,0,2.59966457776147,1.49611180822643,1.22501613757421,8.78916424547506,3.906676722619,3.66466620781659,7.64700934440319,6.83045484958446,7.2826552954673,1.6366586336825,0.912392380975631,2.0190142737785,0,1.74420125104357,2.19686182734472,1.94429899074283,1.1198913730029,0,4.19456515144341,2.90144856804538,2.35265659399725,1.54355661621568,0.85960031981627,2.06268836910977,27.5150386769053,33.3264316941381,27.2547503507657,0.338844532069132,3.55717918444456,0.899899717281399,5.93319817540185,1.4209602298922,1.79760066311043,1.92109152660777,14.5165457231869,16.605730414798,14.7227472945967,13.7112472513826,11.4851641294839,17.2712026893085,15.7186572469908,16.5459381589804,17.6185409599022,13.6625451751151,16.4358990584181,26.9048026969595,29.0930706655663,17.7110545989298,13.4007839520663,10.6924895906019,11.7654650788144,29.7574871328404,16.5151149726959,15.4711540034999,2.42323818666189,2.49386148352392,1.73918693221007,1.72084775396277,0.679971333707751,3.2382191498269,1.94932925234301,1.79210754838934,2.94933282276679,1.53387290320252,1.03914401841148,0.35333957451034,1.54927761754349,0,2.54805239706646,0,0.865964164044856,0.760079596425296,1.01104889002957,2.05530983494308,1.55362730188303,3.85949561568544,1.90833859442749,2.74018930480927,1.61430848079241,3.01445281105245,2.3517741427141,3.01599819191221,2.47194967734374,1.15679485535929,0.884610551949874,0.808834249737046,0.883366073841574,2.42437626567611,5.59175283654366,8.19786231632332,6.49284791121711,2.81002760729451,0.958520996047362,0.599902730993408,0.635351135365324,15.7280171375064,16.9275223042892,12.1884721549478,12.5153510538439,13.0414883238469,12.8828587626927,9.5722345209977,1.2220723662038,7.2156042953854,34.8757406638471,4.62972082950243,2.47228841629137,1.83921683546778,4.50155324513373,4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| ||
|EntrezGene=269397 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q8BW22 | |||
|association_with_transcript=0bp_to_ENSMUST00000041126_5end | |||
|description=CAGE_peak_2_at_Ss18l1_5end | |||
|id=chr2:179777201..179777267,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.16e-15!23;CL:0000337!3.16e-15!23;CL:0000540!6.07e-12!33;CL:0000047!6.07e-12!33;CL:0000031!6.07e-12!33;CL:0000404!6.07e-12!33;CL:0000393!1.83e-08!39;CL:0000211!1.83e-08!39;CL:0002319!2.57e-07!43;CL:0000221!6.45e-07!44;CL:0000133!6.45e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.96e-15,23;CL:0000337,2.96e-15,23;CL:0000540,5.78e-12,33;CL:0000047,5.78e-12,33;CL:0000031,5.78e-12,33;CL:0000404,5.78e-12,33;CL:0000393,2.29e-08,39;CL:0000211,2.29e-08,39;CL:0002319,1.79e-07,43;CL:0000221,4.57e-07,44;CL:0000133,4.57e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.09e-18!34;UBERON:0001049!1.58e-17!52;UBERON:0005068!1.58e-17!52;UBERON:0006241!1.58e-17!52;UBERON:0007135!1.58e-17!52;UBERON:0001017!1.64e-17!73;UBERON:0005743!1.64e-17!73;UBERON:0000073!2.24e-17!75;UBERON:0001016!2.24e-17!75;UBERON:0002346!4.76e-17!71;UBERON:0003075!4.76e-17!71;UBERON:0007284!4.76e-17!71;UBERON:0000955!2.20e-16!50;UBERON:0006238!2.20e-16!50;UBERON:0000033!2.74e-16!63;UBERON:0002616!7.23e-16!49;UBERON:0004121!8.79e-16!102;UBERON:0000924!8.79e-16!102;UBERON:0006601!8.79e-16!102;UBERON:0003056!2.10e-15!49;UBERON:0002791!3.54e-15!29;UBERON:0003528!3.54e-15!29;UBERON:0001893!3.54e-15!29;UBERON:0003080!3.88e-14!40;UBERON:0002780!1.50e-13!39;UBERON:0001890!1.50e-13!39;UBERON:0006240!1.50e-13!39;UBERON:0007811!6.80e-12!86;UBERON:0000956!1.73e-10!21;UBERON:0001869!1.73e-10!21;UBERON:0000203!1.73e-10!21;UBERON:0000153!6.25e-10!94;UBERON:0002619!2.90e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.07e-19,54;UBERON:0002020,2.86e-18,34;UBERON:0002346,6.17e-18,64;UBERON:0003075,6.17e-18,64;UBERON:0007284,6.17e-18,64;UBERON:0001017,9.81e-18,73;UBERON:0001049,1.14e-17,52;UBERON:0005068,1.14e-17,52;UBERON:0006241,1.14e-17,52;UBERON:0007135,1.14e-17,52;UBERON:0001016,1.35e-17,75;UBERON:0004121,3.34e-16,95;UBERON:0000924,3.34e-16,95;UBERON:0006601,3.34e-16,95;UBERON:0003056,1.96e-15,49;UBERON:0003528,3.32e-15,29;UBERON:0002791,3.32e-15,29;UBERON:0001893,3.32e-15,29;UBERON:0000955,9.87e-15,47;UBERON:0006238,9.87e-15,47;UBERON:0002616,3.16e-14,46;UBERON:0010371,3.37e-14,73;UBERON:0003080,3.65e-14,40;UBERON:0002780,1.42e-13,39;UBERON:0001890,1.42e-13,39;UBERON:0006240,1.42e-13,39;UBERON:0000956,1.66e-10,21;UBERON:0001869,1.66e-10,21;UBERON:0000203,1.66e-10,21;UBERON:0010314,6.05e-09,92;UBERON:0002619,2.80e-08,17 | |||
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| |||
|short_description=p2@Ss18l1 | |||
}} |
Revision as of 23:11, 13 September 2013
Short description: | p2@Ss18l1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ss18l1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000041126_5end |
EntrezGene: | Ss18l1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.96e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.96e-15 | 23 |
neuron | 5.78e-12 | 33 |
neuronal stem cell | 5.78e-12 | 33 |
neuroblast | 5.78e-12 | 33 |
electrically signaling cell | 5.78e-12 | 33 |
electrically responsive cell | 2.29e-08 | 39 |
electrically active cell | 2.29e-08 | 39 |
neural cell | 1.79e-07 | 43 |
ectodermal cell | 4.57e-07 | 44 |
neurectodermal cell | 4.57e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 5.07e-19 | 54 |
gray matter | 2.86e-18 | 34 |
neurectoderm | 6.17e-18 | 64 |
neural plate | 6.17e-18 | 64 |
presumptive neural plate | 6.17e-18 | 64 |
central nervous system | 9.81e-18 | 73 |
neural tube | 1.14e-17 | 52 |
neural rod | 1.14e-17 | 52 |
future spinal cord | 1.14e-17 | 52 |
neural keel | 1.14e-17 | 52 |
nervous system | 1.35e-17 | 75 |
ectoderm-derived structure | 3.34e-16 | 95 |
ectoderm | 3.34e-16 | 95 |
presumptive ectoderm | 3.34e-16 | 95 |
pre-chordal neural plate | 1.96e-15 | 49 |
brain grey matter | 3.32e-15 | 29 |
regional part of telencephalon | 3.32e-15 | 29 |
telencephalon | 3.32e-15 | 29 |
brain | 9.87e-15 | 47 |
future brain | 9.87e-15 | 47 |
regional part of brain | 3.16e-14 | 46 |
ecto-epithelium | 3.37e-14 | 73 |
anterior neural tube | 3.65e-14 | 40 |
regional part of forebrain | 1.42e-13 | 39 |
forebrain | 1.42e-13 | 39 |
future forebrain | 1.42e-13 | 39 |
cerebral cortex | 1.66e-10 | 21 |
cerebral hemisphere | 1.66e-10 | 21 |
pallium | 1.66e-10 | 21 |
structure with developmental contribution from neural crest | 6.05e-09 | 92 |
regional part of cerebral cortex | 2.80e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.