FFCP PHASE1:Mm9::chr1:157264524..157264565,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19775|HGNC=|UniProt=Q9Z0U0,D3Z2B4|association_with_transcript=0bp_to_ENSMUST00000111774,ENSMUST00000111775,ENSMUST00000129271_5end|description=CAGE_peak_1_at_Xpr1_5end|id=chr1:157264524..157264565,-|ontology_enrichment_celltype=CL:0000117!4.61e-15!23;CL:0000337!4.61e-15!23;CL:0000221!8.02e-09!44;CL:0000133!8.02e-09!44;CL:0002319!1.75e-08!43;CL:0000540!5.32e-08!33;CL:0000047!5.32e-08!33;CL:0000031!5.32e-08!33;CL:0000404!5.32e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.60e-15,23;CL:0000337,4.60e-15,23;CL:0000221,8.02e-09,44;CL:0000133,8.02e-09,44;CL:0002319,1.75e-08,43;CL:0000540,5.32e-08,33;CL:0000047,5.32e-08,33;CL:0000031,5.32e-08,33;CL:0000404,5.32e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.82e-13!52;UBERON:0005068!2.82e-13!52;UBERON:0006241!2.82e-13!52;UBERON:0007135!2.82e-13!52;UBERON:0000073!5.03e-13!75;UBERON:0001016!5.03e-13!75;UBERON:0001017!7.25e-13!73;UBERON:0005743!7.25e-13!73;UBERON:0000033!8.44e-13!63;UBERON:0000955!3.11e-12!50;UBERON:0006238!3.11e-12!50;UBERON:0002616!8.62e-12!49;UBERON:0002020!1.02e-10!34;UBERON:0002346!1.40e-10!71;UBERON:0003075!1.40e-10!71;UBERON:0007284!1.40e-10!71;UBERON:0004121!1.42e-10!102;UBERON:0000924!1.42e-10!102;UBERON:0006601!1.42e-10!102;UBERON:0003080!7.70e-10!40;UBERON:0002780!1.80e-09!39;UBERON:0001890!1.80e-09!39;UBERON:0006240!1.80e-09!39;UBERON:0003056!2.18e-09!49;UBERON:0002791!4.15e-08!29;UBERON:0003528!4.15e-08!29;UBERON:0001893!4.15e-08!29;UBERON:0007811!4.37e-08!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.75e-14,54;UBERON:0001049,2.82e-13,52;UBERON:0005068,2.82e-13,52;UBERON:0006241,2.82e-13,52;UBERON:0007135,2.82e-13,52;UBERON:0001016,5.03e-13,75;UBERON:0001017,7.25e-13,73;UBERON:0010314,5.78e-12,92;UBERON:0002346,5.49e-11,64;UBERON:0003075,5.49e-11,64;UBERON:0007284,5.49e-11,64;UBERON:0002020,1.02e-10,34;UBERON:0004121,1.04e-10,95;UBERON:0000924,1.04e-10,95;UBERON:0006601,1.04e-10,95;UBERON:0000955,1.24e-10,47;UBERON:0006238,1.24e-10,47;UBERON:0002616,3.32e-10,46;UBERON:0003080,7.70e-10,40;UBERON:0002780,1.80e-09,39;UBERON:0001890,1.80e-09,39;UBERON:0006240,1.80e-09,39;UBERON:0003056,2.18e-09,49;UBERON:0010371,9.21e-09,73;UBERON:0003528,4.15e-08,29;UBERON:0002791,4.15e-08,29;UBERON:0001893,4.15e-08,29|phase1_expression=9.28863313207805,13.2610654902957,13.6499771816861,14.5182821427278,12.0214975187123,6.71517087647559,2.10251376535973,1.80772652818207,2.39340827657833,3.27690336850791,0.68487187290202,2.15384829287408,2.73921167889929,2.01066925563694,3.66420737997229,4.85940641735582,2.79824751251259,4.10100814965709,3.56497527374921,2.54633791078818,16.5834415794586,4.66667470644161,1.30599894569468,3.51983330145495,2.2940928106717,10.3361753540704,11.1998119001359,5.38678081714723,5.51067916423484,8.31699428207772,3.76941868114018,1.27006134691926,1.84519436275371,15.8481681015439,4.91047753577167,2.82598897109437,6.12508068787107,15.9042019680025,4.6880120671428,14.1351410872926,17.6469446409304,15.0270006690858,11.6522484727477,2.14024590558481,2.63580021170738,4.77221555620372,2.34717403304412,7.84890562969608,9.22681967484782,7.77719596297134,4.19959264876088,5.75010257459886,6.37573903019398,3.62681071005672,6.04968838456435,5.65970759279083,5.15760191889762,4.12537673821954,21.2432283902578,17.4567023159771,15.8457850876545,3.38844532069132,2.66788438833342,3.5995988691256,0.988866362566974,5.6838409195688,6.2916023208865,9.22123932771731,18.3530613786005,16.605730414798,12.6194976810829,14.2825492201902,12.589506834242,17.2712026893085,23.2904494574314,10.1114066527102,11.0115880999389,24.7713435885264,25.8058975870489,26.2453712583086,41.535390195494,25.0038417867245,14.7966989470732,20.8222165711722,23.5309301576288,16.2045722010517,19.6472919502762,20.1311401491325,4.92220256665696,6.8014404096107,3.76823835312181,0.860423876981386,1.3599426674155,4.31762553310254,2.59910566979068,4.03224198387602,8.56710962803686,6.81721290312231,2.33807404142582,4.94675404314476,9.29566570526091,5.13305909657271,28.028576367731,14.2213340630666,0.432982082022428,1.77351905832569,0,8.67797485864856,7.76813650941515,9.50029690014878,3.29622120855658,3.65358573974569,4.38169444786511,5.27529241934179,4.8211369925639,6.91166252313215,4.44950941921873,4.04878199375753,1.76922110389975,3.07357014900077,10.6003928860989,2.90925151881133,1.86391761218122,4.9772735491963,9.00620839297857,5.10914110417183,3.59445373517761,2.99951365496704,2.79554499560742,9.8861822007183,3.66000482254901,17.4659549436882,10.4294592115366,8.69432554923124,9.76603809429932,9.89671704713322,4.68461073711455,5.97153458928446,2.77995034277042,6.52369753248069,3.12289063110489,3.67843367093557,4.32149111532838,5.57607825992146,8.77670839052129,6.79002717509704,8.99536555773397,3.88055056108524,4.31135985865684,3.40390944302075,3.34307135911503,2.84954452155847,1.94633074457919,2.78601733217733,1.85203922767149,2.18937693500343,1.40442637462647,0.51469581422943,2.8416349939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| ||
|EntrezGene=19775 | |||
|HGNC= | |||
|UniProt=Q9Z0U0,D3Z2B4 | |||
|association_with_transcript=0bp_to_ENSMUST00000111774,ENSMUST00000111775,ENSMUST00000129271_5end | |||
|description=CAGE_peak_1_at_Xpr1_5end | |||
|id=chr1:157264524..157264565,- | |||
|ontology_enrichment_celltype=CL:0000117!4.61e-15!23;CL:0000337!4.61e-15!23;CL:0000221!8.02e-09!44;CL:0000133!8.02e-09!44;CL:0002319!1.75e-08!43;CL:0000540!5.32e-08!33;CL:0000047!5.32e-08!33;CL:0000031!5.32e-08!33;CL:0000404!5.32e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.60e-15,23;CL:0000337,4.60e-15,23;CL:0000221,8.02e-09,44;CL:0000133,8.02e-09,44;CL:0002319,1.75e-08,43;CL:0000540,5.32e-08,33;CL:0000047,5.32e-08,33;CL:0000031,5.32e-08,33;CL:0000404,5.32e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.82e-13!52;UBERON:0005068!2.82e-13!52;UBERON:0006241!2.82e-13!52;UBERON:0007135!2.82e-13!52;UBERON:0000073!5.03e-13!75;UBERON:0001016!5.03e-13!75;UBERON:0001017!7.25e-13!73;UBERON:0005743!7.25e-13!73;UBERON:0000033!8.44e-13!63;UBERON:0000955!3.11e-12!50;UBERON:0006238!3.11e-12!50;UBERON:0002616!8.62e-12!49;UBERON:0002020!1.02e-10!34;UBERON:0002346!1.40e-10!71;UBERON:0003075!1.40e-10!71;UBERON:0007284!1.40e-10!71;UBERON:0004121!1.42e-10!102;UBERON:0000924!1.42e-10!102;UBERON:0006601!1.42e-10!102;UBERON:0003080!7.70e-10!40;UBERON:0002780!1.80e-09!39;UBERON:0001890!1.80e-09!39;UBERON:0006240!1.80e-09!39;UBERON:0003056!2.18e-09!49;UBERON:0002791!4.15e-08!29;UBERON:0003528!4.15e-08!29;UBERON:0001893!4.15e-08!29;UBERON:0007811!4.37e-08!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.75e-14,54;UBERON:0001049,2.82e-13,52;UBERON:0005068,2.82e-13,52;UBERON:0006241,2.82e-13,52;UBERON:0007135,2.82e-13,52;UBERON:0001016,5.03e-13,75;UBERON:0001017,7.25e-13,73;UBERON:0010314,5.78e-12,92;UBERON:0002346,5.49e-11,64;UBERON:0003075,5.49e-11,64;UBERON:0007284,5.49e-11,64;UBERON:0002020,1.02e-10,34;UBERON:0004121,1.04e-10,95;UBERON:0000924,1.04e-10,95;UBERON:0006601,1.04e-10,95;UBERON:0000955,1.24e-10,47;UBERON:0006238,1.24e-10,47;UBERON:0002616,3.32e-10,46;UBERON:0003080,7.70e-10,40;UBERON:0002780,1.80e-09,39;UBERON:0001890,1.80e-09,39;UBERON:0006240,1.80e-09,39;UBERON:0003056,2.18e-09,49;UBERON:0010371,9.21e-09,73;UBERON:0003528,4.15e-08,29;UBERON:0002791,4.15e-08,29;UBERON:0001893,4.15e-08,29 | |||
|phase1_expression=9.28863313207805,13.2610654902957,13.6499771816861,14.5182821427278,12.0214975187123,6.71517087647559,2.10251376535973,1.80772652818207,2.39340827657833,3.27690336850791,0.68487187290202,2.15384829287408,2.73921167889929,2.01066925563694,3.66420737997229,4.85940641735582,2.79824751251259,4.10100814965709,3.56497527374921,2.54633791078818,16.5834415794586,4.66667470644161,1.30599894569468,3.51983330145495,2.2940928106717,10.3361753540704,11.1998119001359,5.38678081714723,5.51067916423484,8.31699428207772,3.76941868114018,1.27006134691926,1.84519436275371,15.8481681015439,4.91047753577167,2.82598897109437,6.12508068787107,15.9042019680025,4.6880120671428,14.1351410872926,17.6469446409304,15.0270006690858,11.6522484727477,2.14024590558481,2.63580021170738,4.77221555620372,2.34717403304412,7.84890562969608,9.22681967484782,7.77719596297134,4.19959264876088,5.75010257459886,6.37573903019398,3.62681071005672,6.04968838456435,5.65970759279083,5.15760191889762,4.12537673821954,21.2432283902578,17.4567023159771,15.8457850876545,3.38844532069132,2.66788438833342,3.5995988691256,0.988866362566974,5.6838409195688,6.2916023208865,9.22123932771731,18.3530613786005,16.605730414798,12.6194976810829,14.2825492201902,12.589506834242,17.2712026893085,23.2904494574314,10.1114066527102,11.0115880999389,24.7713435885264,25.8058975870489,26.2453712583086,41.535390195494,25.0038417867245,14.7966989470732,20.8222165711722,23.5309301576288,16.2045722010517,19.6472919502762,20.1311401491325,4.92220256665696,6.8014404096107,3.76823835312181,0.860423876981386,1.3599426674155,4.31762553310254,2.59910566979068,4.03224198387602,8.56710962803686,6.81721290312231,2.33807404142582,4.94675404314476,9.29566570526091,5.13305909657271,28.028576367731,14.2213340630666,0.432982082022428,1.77351905832569,0,8.67797485864856,7.76813650941515,9.50029690014878,3.29622120855658,3.65358573974569,4.38169444786511,5.27529241934179,4.8211369925639,6.91166252313215,4.44950941921873,4.04878199375753,1.76922110389975,3.07357014900077,10.6003928860989,2.90925151881133,1.86391761218122,4.9772735491963,9.00620839297857,5.10914110417183,3.59445373517761,2.99951365496704,2.79554499560742,9.8861822007183,3.66000482254901,17.4659549436882,10.4294592115366,8.69432554923124,9.76603809429932,9.89671704713322,4.68461073711455,5.97153458928446,2.77995034277042,6.52369753248069,3.12289063110489,3.67843367093557,4.32149111532838,5.57607825992146,8.77670839052129,6.79002717509704,8.99536555773397,3.88055056108524,4.31135985865684,3.40390944302075,3.34307135911503,2.84954452155847,1.94633074457919,2.78601733217733,1.85203922767149,2.18937693500343,1.40442637462647,0.51469581422943,2.84163499395593,5.59239585845855,3.28336483973535,4.32148947506436,7.81257627431194,4.13204886669548,5.707883176833,4.41814495025775,6.70683503499048,7.94004328096752,5.43047504714485,6.895033491322,8.35008738322314,7.60239934611728,2.85415149878366,7.51555945058082,7.36014819974445,13.7892180588241,16.1905203662061,4.7601101999438,3.83918850963421,3.48355007790658,3.73715637834071,5.24377164020691,5.11469500843202,3.04361001780095,11.3886974770683,4.6115707322723,6.03204501120647,3.78017296878187,6.04388670069272,4.49409704327111,8.64552199498777,7.36822711041159,2.65535061334314,3.31320686568214,5.63538678365402,3.86937522906097,3.87904974335251,7.925347647606,7.96780367765642,8.11855813887812,10.047918581848,7.89741849099523,2.37162101669719,5.6727335943472,4.12773889737726,2.47348323623339,4.05720242777006,2.41177159752417,3.05551022137704,2.5892652370573,3.24270453550071,5.49122826376163,2.87536413054709,3.72140947668503,5.61667811606209,2.02063102357689,4.84373016509163,3.37710464954357,4.80358294433172,2.4633883530163,2.60743962307241,3.56464680127895,3.05097322775053,5.86271901046355,4.04674189506223,9.95181604074774,4.72905432318573,4.87222317227305,6.85655505227195,5.24362607090362,8.63424909329478,8.10034728056465,1.50791283939272,4.89515115436839,0.491764273019036,2.75936746304733,8.18808008937739,8.90808818100744,2.78689407140348,11.8661335786055,3.47059041357882,2.34263246577983,2.36965737506079,2.86762557543062,2.89638276307112,3.96307143104365,5.26253912177363,2.92255857911312,1.58115111178609,11.5675673911851,4.11626247103979,5.69809931735217,5.21238269931443,5.27904393512113,1.32745138339963,1.21390318077491,2.72091201268276,1.88605079755898,0.885905678642318,3.68922177532713,3.6179961043551,2.90826983582004,3.56497378384721,5.37262488490887,1.05418608574999,3.09406629744561,6.80879211507576,5.76195500900193,3.10460841078611,6.00143698088458,9.57637261668277,6.0645397984704,11.8475294833527,5.48036908406279,2.58138878870081,2.75381692122966,4.6310963591542,3.95727007059552,3.71368181400583,3.92034012033013,3.58117032009409,1.96969079694074,5.82961673259701,13.1651964427462,6.1513517087227,4.54051109519089,3.51869602002452,3.95573759709851,4.51090951479383,4.57556346413045,5.77926661979108,6.01791244991729,5.52799895217695,0.954670618015114,3.32152793260192,3.863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| |||
|short_description=p1@Xpr1 | |||
}} |
Revision as of 19:19, 13 September 2013
Short description: | p1@Xpr1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Xpr1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000111774, ENSMUST00000111775, ENSMUST00000129271_5end |
EntrezGene: | Xpr1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.60e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.60e-15 | 23 |
ectodermal cell | 8.02e-09 | 44 |
neurectodermal cell | 8.02e-09 | 44 |
neural cell | 1.75e-08 | 43 |
neuron | 5.32e-08 | 33 |
neuronal stem cell | 5.32e-08 | 33 |
neuroblast | 5.32e-08 | 33 |
electrically signaling cell | 5.32e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.75e-14 | 54 |
neural tube | 2.82e-13 | 52 |
neural rod | 2.82e-13 | 52 |
future spinal cord | 2.82e-13 | 52 |
neural keel | 2.82e-13 | 52 |
nervous system | 5.03e-13 | 75 |
central nervous system | 7.25e-13 | 73 |
structure with developmental contribution from neural crest | 5.78e-12 | 92 |
neurectoderm | 5.49e-11 | 64 |
neural plate | 5.49e-11 | 64 |
presumptive neural plate | 5.49e-11 | 64 |
gray matter | 1.02e-10 | 34 |
ectoderm-derived structure | 1.04e-10 | 95 |
ectoderm | 1.04e-10 | 95 |
presumptive ectoderm | 1.04e-10 | 95 |
brain | 1.24e-10 | 47 |
future brain | 1.24e-10 | 47 |
regional part of brain | 3.32e-10 | 46 |
anterior neural tube | 7.70e-10 | 40 |
regional part of forebrain | 1.80e-09 | 39 |
forebrain | 1.80e-09 | 39 |
future forebrain | 1.80e-09 | 39 |
pre-chordal neural plate | 2.18e-09 | 49 |
ecto-epithelium | 9.21e-09 | 73 |
brain grey matter | 4.15e-08 | 29 |
regional part of telencephalon | 4.15e-08 | 29 |
telencephalon | 4.15e-08 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.