FFCP PHASE1:Hg19::chr11:123325116..123325128,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=10bp_to_ENST00000525757,uc001pyv.1_5end|description=CAGE_peak_4_at_ENST00000525757_5end,CAGE_peak_4_at_uc001pyv.1_5end|id=chr11:123325116..123325128,+|ontology_enrichment_celltype=CL:0002150!1.41e-09!3;CL:0000861!1.41e-09!3|ontology_enrichment_celltype_v019=CL:0000082;2.86e-14;19|ontology_enrichment_celltype_v019_2=CL:0000082,2.37e-14,19|ontology_enrichment_development_v019=UBERON:0008947;2.69e-20;29!UBERON:0001041;6.41e-14;30!UBERON:0009847;6.32e-07;3!UBERON:0003353;6.32e-07;3|ontology_enrichment_disease=DOID:0050687!5.37e-13!143;DOID:305!6.61e-13!106;DOID:162!1.21e-08!235;DOID:14566!2.89e-08!239|ontology_enrichment_disease_v019=DOID:1324;5.66e-18;15!DOID:0050615;7.10e-17;16!DOID:1325;2.24e-10;7!DOID:3904;2.24e-10;7!DOID:3905;2.85e-08;9!DOID:4556;8.62e-07;3|ontology_enrichment_disease_v019_2=DOID:1324,4.45e-18,15;DOID:0050615,5.66e-17,16;DOID:305,5.06e-12,106;DOID:1325,1.85e-10,7;DOID:3904,1.85e-10,7;DOID:0050687,1.03e-08,143;DOID:3905,2.75e-08,9;DOID:4556,8.15e-07,3|ontology_enrichment_uberon=UBERON:0001737!3.28e-19!9;UBERON:0001557!4.29e-15!19;UBERON:0003296!2.23e-11!4;UBERON:0010133!2.23e-11!4;UBERON:0000072!5.26e-10!46;UBERON:0000949!1.14e-09!45;UBERON:0001264!1.77e-09!10;UBERON:0003922!1.77e-09!10;UBERON:0003923!1.77e-09!10;UBERON:0003924!1.77e-09!10;UBERON:0003921!1.77e-09!10;UBERON:0001041!5.45e-09!98;UBERON:0001045!1.52e-08!11;UBERON:0008947!2.86e-08!38;UBERON:0003258!2.86e-08!38;UBERON:0000065!3.31e-08!53;UBERON:0002114!4.15e-07!12;UBERON:0001004!7.24e-07!72;UBERON:0000077!7.56e-07!130;UBERON:0004921!7.56e-07!129;UBERON:0004185!7.56e-07!129|ontology_enrichment_uberon_v019=UBERON:0000072;6.00e-15;37!UBERON:0004802;2.86e-14;19!UBERON:0000115;2.86e-14;19!UBERON:0002048;2.26e-12;22!UBERON:0004807;2.26e-12;22!UBERON:0000117;2.26e-12;22!UBERON:0000171;2.26e-12;22!UBERON:0000170;2.26e-12;22!UBERON:0000065;2.17e-10;44!UBERON:0001737;2.85e-08;9!UBERON:0001557;2.85e-08;9!UBERON:0005911;1.04e-07;36!UBERON:0001264;1.57e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0008947,1.62e-15,38;UBERON:0003258,1.62e-15,38;UBERON:0004802,2.37e-14,19;UBERON:0000115,2.37e-14,19;UBERON:0000072,1.63e-12,47;UBERON:0002048,1.92e-12,22;UBERON:0000117,1.92e-12,22;UBERON:0000171,1.92e-12,22;UBERON:0000170,1.92e-12,22;UBERON:0005597,1.92e-12,22;UBERON:0000118,1.92e-12,22;UBERON:0005153,2.49e-11,37;UBERON:0000065,7.21e-11,54;UBERON:0004807,7.67e-10,28;UBERON:0001041,5.71e-09,87;UBERON:0005157,6.34e-09,47;UBERON:0004921,2.22e-08,118;UBERON:0001737,2.96e-08,9;UBERON:0005178,3.76e-08,34;UBERON:0002224,3.76e-08,34;UBERON:0005181,6.32e-08,35;UBERON:0001004,7.21e-08,74;UBERON:0001264,1.73e-07,10;UBERON:0005911,3.86e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0.47296445977717,0,0,0,0,0.545812300115692,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0.270803863765016,0,0,0.164437904603676,1.10540007114339,0.289803085735052,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,0.505754070234305,0.723033089650446,0.661763836394364,1.08939722046203,0.474541238222193,1.61797569792197,0.784885860501384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.412164046590889,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.891547074219827,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,3.04335996948536,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,1.89110145414349,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0.23056390438806,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0.664653872707185,0.330991955875499,1.2557316736289,1.19472429772959,0,0,0,0,0,0,0,0.774050650312681,1.60796497589608,0.821154570532092,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0.864328787928898,0.372757606696298,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43429871466276,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0.13223260174269,2.56630256826494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=10bp_to_ENST00000525757,uc001pyv.1_5end | |||
|description=CAGE_peak_4_at_ENST00000525757_5end,CAGE_peak_4_at_uc001pyv.1_5end | |||
|id=chr11:123325116..123325128,+ | |||
|ontology_enrichment_celltype=CL:0002150!1.41e-09!3;CL:0000861!1.41e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0000082;2.86e-14;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,2.37e-14,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.69e-20;29!UBERON:0001041;6.41e-14;30!UBERON:0009847;6.32e-07;3!UBERON:0003353;6.32e-07;3 | |||
|ontology_enrichment_disease=DOID:0050687!5.37e-13!143;DOID:305!6.61e-13!106;DOID:162!1.21e-08!235;DOID:14566!2.89e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:1324;5.66e-18;15!DOID:0050615;7.10e-17;16!DOID:1325;2.24e-10;7!DOID:3904;2.24e-10;7!DOID:3905;2.85e-08;9!DOID:4556;8.62e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1324,4.45e-18,15;DOID:0050615,5.66e-17,16;DOID:305,5.06e-12,106;DOID:1325,1.85e-10,7;DOID:3904,1.85e-10,7;DOID:0050687,1.03e-08,143;DOID:3905,2.75e-08,9;DOID:4556,8.15e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.28e-19!9;UBERON:0001557!4.29e-15!19;UBERON:0003296!2.23e-11!4;UBERON:0010133!2.23e-11!4;UBERON:0000072!5.26e-10!46;UBERON:0000949!1.14e-09!45;UBERON:0001264!1.77e-09!10;UBERON:0003922!1.77e-09!10;UBERON:0003923!1.77e-09!10;UBERON:0003924!1.77e-09!10;UBERON:0003921!1.77e-09!10;UBERON:0001041!5.45e-09!98;UBERON:0001045!1.52e-08!11;UBERON:0008947!2.86e-08!38;UBERON:0003258!2.86e-08!38;UBERON:0000065!3.31e-08!53;UBERON:0002114!4.15e-07!12;UBERON:0001004!7.24e-07!72;UBERON:0000077!7.56e-07!130;UBERON:0004921!7.56e-07!129;UBERON:0004185!7.56e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;6.00e-15;37!UBERON:0004802;2.86e-14;19!UBERON:0000115;2.86e-14;19!UBERON:0002048;2.26e-12;22!UBERON:0004807;2.26e-12;22!UBERON:0000117;2.26e-12;22!UBERON:0000171;2.26e-12;22!UBERON:0000170;2.26e-12;22!UBERON:0000065;2.17e-10;44!UBERON:0001737;2.85e-08;9!UBERON:0001557;2.85e-08;9!UBERON:0005911;1.04e-07;36!UBERON:0001264;1.57e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,1.62e-15,38;UBERON:0003258,1.62e-15,38;UBERON:0004802,2.37e-14,19;UBERON:0000115,2.37e-14,19;UBERON:0000072,1.63e-12,47;UBERON:0002048,1.92e-12,22;UBERON:0000117,1.92e-12,22;UBERON:0000171,1.92e-12,22;UBERON:0000170,1.92e-12,22;UBERON:0005597,1.92e-12,22;UBERON:0000118,1.92e-12,22;UBERON:0005153,2.49e-11,37;UBERON:0000065,7.21e-11,54;UBERON:0004807,7.67e-10,28;UBERON:0001041,5.71e-09,87;UBERON:0005157,6.34e-09,47;UBERON:0004921,2.22e-08,118;UBERON:0001737,2.96e-08,9;UBERON:0005178,3.76e-08,34;UBERON:0002224,3.76e-08,34;UBERON:0005181,6.32e-08,35;UBERON:0001004,7.21e-08,74;UBERON:0001264,1.73e-07,10;UBERON:0005911,3.86e-07,82 | |||
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|short_description=p4@ENST00000525757,p4@uc001pyv.1 | |||
}} |
Revision as of 16:21, 10 September 2013
Short description: | p4@ENST00000525757, p4@uc001pyv.1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ENST00000525757_5end, CAGE_peak_4_at_uc001pyv.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 10bp_to_ENST00000525757, uc001pyv.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 2.37e-14 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 1.62e-15 | 38 |
endoderm of foregut | 1.62e-15 | 38 |
respiratory tract epithelium | 2.37e-14 | 19 |
lung epithelium | 2.37e-14 | 19 |
segment of respiratory tract | 1.63e-12 | 47 |
lung | 1.92e-12 | 22 |
respiratory tube | 1.92e-12 | 22 |
respiration organ | 1.92e-12 | 22 |
pair of lungs | 1.92e-12 | 22 |
lung primordium | 1.92e-12 | 22 |
lung bud | 1.92e-12 | 22 |
epithelial bud | 2.49e-11 | 37 |
respiratory tract | 7.21e-11 | 54 |
respiratory system epithelium | 7.67e-10 | 28 |
foregut | 5.71e-09 | 87 |
epithelial fold | 6.34e-09 | 47 |
subdivision of digestive tract | 2.22e-08 | 118 |
larynx | 2.96e-08 | 9 |
thoracic cavity element | 3.76e-08 | 34 |
thoracic cavity | 3.76e-08 | 34 |
thoracic segment organ | 6.32e-08 | 35 |
respiratory system | 7.21e-08 | 74 |
pancreas | 1.73e-07 | 10 |
endo-epithelium | 3.86e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
lung cancer | 4.45e-18 | 15 |
respiratory system cancer | 5.66e-17 | 16 |
carcinoma | 5.06e-12 | 106 |
bronchus cancer | 1.85e-10 | 7 |
bronchogenic carcinoma | 1.85e-10 | 7 |
cell type cancer | 1.03e-08 | 143 |
lung carcinoma | 2.75e-08 | 9 |
lung large cell carcinoma | 8.15e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.