FFCP PHASE1:Hg19::chr15:50646418..50646447,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100129387|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=47bp_to_NR_024490,uc001zyh.3_5end|coexpression_cluster_id=C2|description=CAGE_peak_3_at_LOC100129387_5end|id=chr15:50646418..50646447,+|ontology_enrichment_celltype=CL:0002057!2.95e-26!42;CL:0000860!3.62e-25!45;CL:0000766!8.94e-19!76;CL:0000738!2.13e-16!140;CL:0000557!1.27e-15!71;CL:0000839!1.07e-14!70;CL:0002009!4.24e-14!65;CL:0002031!6.01e-14!124;CL:0000037!1.15e-13!172;CL:0000566!1.15e-13!172;CL:0000763!2.41e-13!112;CL:0000049!2.41e-13!112;CL:0002032!2.79e-13!165;CL:0000837!2.79e-13!165;CL:0002194!3.84e-13!63;CL:0000576!3.84e-13!63;CL:0000040!3.84e-13!63;CL:0000559!3.84e-13!63;CL:0002087!1.08e-12!119;CL:0000988!1.68e-12!182;CL:0000048!3.14e-11!430;CL:0000134!7.39e-11!358;CL:0000034!1.22e-10!444;CL:0000723!1.73e-10!436;CL:0002320!1.92e-10!365;CL:0000003!2.21e-08!722;CL:0000219!9.02e-08!390;CL:0000012!1.97e-07!682;CL:0000144!3.05e-07!625;CL:0000094!4.71e-07!8;CL:0002371!9.74e-07!591|ontology_enrichment_celltype_v019=CL:0000860;5.21e-40;33!CL:0002057;5.21e-40;33!CL:0000473;1.63e-28;39!CL:0000234;1.63e-28;39!CL:0000576;9.32e-25;48!CL:0000766;4.08e-19;69!CL:0000094;1.29e-12;8!CL:0000081;2.04e-10;11!CL:0000763;8.00e-10;100!CL:0002087;6.41e-09;104!CL:0000738;4.60e-08;136|ontology_enrichment_celltype_v019_2=CL:0000860,4.30e-48,42;CL:0002057,4.30e-48,42;CL:0000473,3.14e-42,48;CL:0000234,3.14e-42,48;CL:0000766,1.13e-39,72;CL:0000557,5.43e-33,67;CL:0002009,8.32e-33,61;CL:0002194,1.02e-30,59;CL:0000576,1.02e-30,59;CL:0000040,1.02e-30,59;CL:0000559,1.02e-30,59;CL:0000839,6.24e-30,66;CL:0000763,1.09e-28,108;CL:0000049,1.09e-28,108;CL:0000738,2.81e-28,136;CL:0000037,3.35e-24,168;CL:0000988,1.16e-22,177;CL:0002032,2.96e-22,161;CL:0000837,2.96e-22,161;CL:0002031,1.63e-21,120;CL:0002087,2.00e-21,115;CL:0000134,2.91e-17,354;CL:0002320,2.41e-16,361;CL:0000219,3.98e-14,386;CL:0000034,7.41e-14,441;CL:0000048,9.86e-14,427;CL:0000723,4.12e-13,433;CL:0000094,1.35e-12,8;CL:0000081,1.89e-10,11|ontology_enrichment_development_v019=CL:0002057;1.68e-34;42!CL:0000049;1.01e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!9.34e-20!102;UBERON:0003061!9.34e-20!102;UBERON:0002193!2.71e-17!112;UBERON:0002371!1.95e-15!80;UBERON:0001474!4.53e-13!86;UBERON:0002405!9.03e-12!115;UBERON:0004765!6.12e-11!101;UBERON:0001434!6.12e-11!101;UBERON:0002204!4.44e-10!167;UBERON:0002384!4.94e-10!375;UBERON:0003081!7.65e-08!216;UBERON:0000178!1.04e-07!15;UBERON:0000179!1.04e-07!15;UBERON:0000463!1.04e-07!15|ontology_enrichment_uberon_v019=UBERON:0000178;4.14e-10;15!UBERON:0000179;4.14e-10;15!UBERON:0000463;4.14e-10;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.72e-37,98;UBERON:0003061,5.72e-37,98;UBERON:0002193,3.66e-34,108;UBERON:0002371,9.68e-32,76;UBERON:0001474,3.36e-28,82;UBERON:0002405,3.29e-25,93;UBERON:0004765,3.07e-24,90;UBERON:0001434,8.90e-23,100;UBERON:0002384,1.30e-15,371;UBERON:0003081,1.99e-15,203;UBERON:0002204,4.89e-15,167;UBERON:0000178,1.67e-10,15;UBERON:0000179,1.67e-10,15;UBERON:0000463,1.67e-10,15;UBERON:0000926,9.02e-08,315;UBERON:0004120,9.02e-08,315;UBERON:0006603,9.02e-08,315|phase1_expression=0.54503513781167,1.2846031433459,1.40954404095971,0,1.34088328328186,0,0,0,3.3954131665979,0,0,0,0,0.74259811776028,0,0,1.80808358407193,0,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0,0,0,0,14.9478425202584,2.30297638858328,4.79929982279836,0,0,1.47901604066715,0.154934401160603,0.284338464974843,3.81680571135301,3.32397245119126,2.20598892217156,6.07630438004385,0.223915474239924,0.32389366601898,0,3.05336301437086,2.26725566213286,3.15359279544161,6.0431549595478,2.87817521615278,6.19412741790207,8.63077176966451,6.66017836975662,5.91205574721463,10.3423704220986,3.87290810150296,4.06279459783025,3.38836211176688,2.18324920046277,4.04502272001152,9.18251677112708,7.38136762275015,8.31138263538754,4.94776950280074,2.59302754908121,3.83602275479425,6.67481248845743,8.5107783703671,9.9651559839292,11.5574386018102,5.73631210262222,5.64690996233303,6.05399502633369,2.94622108790052,4.74693581161327,0.633765858935825,1.27562579979026,2.09658645508376,5.05478840159228,4.20495299956218,3.37523732063868,1.99508920618874,1.59133341759272,0.547992461293902,1.75996244461323,1.09227722252426,0.889509253863555,0,1.60158394814405,1.72425731986345,0.661044872784862,0.954053754535364,1.1384259382189,0.587237189370939,1.14681968437569,2.64342657158052,1.68152568894461,1.05353633910031,0.590129310341499,0,0.616804496998528,0,0.32592226663359,0,0,0.445641827540694,0.589211814949674,0.443067789167242,0,0.128091319725675,0.520237390239513,0.493313713811028,0.552700035571697,0,0,0.535081656179426,1.04535523804977,0.226618685395132,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0.150575119077773,0.255973222308837,1.2493072655234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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100129387 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=47bp_to_NR_024490,uc001zyh.3_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_LOC100129387_5end | |||
|id=chr15:50646418..50646447,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.95e-26!42;CL:0000860!3.62e-25!45;CL:0000766!8.94e-19!76;CL:0000738!2.13e-16!140;CL:0000557!1.27e-15!71;CL:0000839!1.07e-14!70;CL:0002009!4.24e-14!65;CL:0002031!6.01e-14!124;CL:0000037!1.15e-13!172;CL:0000566!1.15e-13!172;CL:0000763!2.41e-13!112;CL:0000049!2.41e-13!112;CL:0002032!2.79e-13!165;CL:0000837!2.79e-13!165;CL:0002194!3.84e-13!63;CL:0000576!3.84e-13!63;CL:0000040!3.84e-13!63;CL:0000559!3.84e-13!63;CL:0002087!1.08e-12!119;CL:0000988!1.68e-12!182;CL:0000048!3.14e-11!430;CL:0000134!7.39e-11!358;CL:0000034!1.22e-10!444;CL:0000723!1.73e-10!436;CL:0002320!1.92e-10!365;CL:0000003!2.21e-08!722;CL:0000219!9.02e-08!390;CL:0000012!1.97e-07!682;CL:0000144!3.05e-07!625;CL:0000094!4.71e-07!8;CL:0002371!9.74e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.21e-40;33!CL:0002057;5.21e-40;33!CL:0000473;1.63e-28;39!CL:0000234;1.63e-28;39!CL:0000576;9.32e-25;48!CL:0000766;4.08e-19;69!CL:0000094;1.29e-12;8!CL:0000081;2.04e-10;11!CL:0000763;8.00e-10;100!CL:0002087;6.41e-09;104!CL:0000738;4.60e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.30e-48,42;CL:0002057,4.30e-48,42;CL:0000473,3.14e-42,48;CL:0000234,3.14e-42,48;CL:0000766,1.13e-39,72;CL:0000557,5.43e-33,67;CL:0002009,8.32e-33,61;CL:0002194,1.02e-30,59;CL:0000576,1.02e-30,59;CL:0000040,1.02e-30,59;CL:0000559,1.02e-30,59;CL:0000839,6.24e-30,66;CL:0000763,1.09e-28,108;CL:0000049,1.09e-28,108;CL:0000738,2.81e-28,136;CL:0000037,3.35e-24,168;CL:0000988,1.16e-22,177;CL:0002032,2.96e-22,161;CL:0000837,2.96e-22,161;CL:0002031,1.63e-21,120;CL:0002087,2.00e-21,115;CL:0000134,2.91e-17,354;CL:0002320,2.41e-16,361;CL:0000219,3.98e-14,386;CL:0000034,7.41e-14,441;CL:0000048,9.86e-14,427;CL:0000723,4.12e-13,433;CL:0000094,1.35e-12,8;CL:0000081,1.89e-10,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.68e-34;42!CL:0000049;1.01e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.34e-20!102;UBERON:0003061!9.34e-20!102;UBERON:0002193!2.71e-17!112;UBERON:0002371!1.95e-15!80;UBERON:0001474!4.53e-13!86;UBERON:0002405!9.03e-12!115;UBERON:0004765!6.12e-11!101;UBERON:0001434!6.12e-11!101;UBERON:0002204!4.44e-10!167;UBERON:0002384!4.94e-10!375;UBERON:0003081!7.65e-08!216;UBERON:0000178!1.04e-07!15;UBERON:0000179!1.04e-07!15;UBERON:0000463!1.04e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.14e-10;15!UBERON:0000179;4.14e-10;15!UBERON:0000463;4.14e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.72e-37,98;UBERON:0003061,5.72e-37,98;UBERON:0002193,3.66e-34,108;UBERON:0002371,9.68e-32,76;UBERON:0001474,3.36e-28,82;UBERON:0002405,3.29e-25,93;UBERON:0004765,3.07e-24,90;UBERON:0001434,8.90e-23,100;UBERON:0002384,1.30e-15,371;UBERON:0003081,1.99e-15,203;UBERON:0002204,4.89e-15,167;UBERON:0000178,1.67e-10,15;UBERON:0000179,1.67e-10,15;UBERON:0000463,1.67e-10,15;UBERON:0000926,9.02e-08,315;UBERON:0004120,9.02e-08,315;UBERON:0006603,9.02e-08,315 | |||
|phase1_expression=0.54503513781167,1.2846031433459,1.40954404095971,0,1.34088328328186,0,0,0,3.3954131665979,0,0,0,0,0.74259811776028,0,0,1.80808358407193,0,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0,0,0,0,14.9478425202584,2.30297638858328,4.79929982279836,0,0,1.47901604066715,0.154934401160603,0.284338464974843,3.81680571135301,3.32397245119126,2.20598892217156,6.07630438004385,0.223915474239924,0.32389366601898,0,3.05336301437086,2.26725566213286,3.15359279544161,6.0431549595478,2.87817521615278,6.19412741790207,8.63077176966451,6.66017836975662,5.91205574721463,10.3423704220986,3.87290810150296,4.06279459783025,3.38836211176688,2.18324920046277,4.04502272001152,9.18251677112708,7.38136762275015,8.31138263538754,4.94776950280074,2.59302754908121,3.83602275479425,6.67481248845743,8.5107783703671,9.9651559839292,11.5574386018102,5.73631210262222,5.64690996233303,6.05399502633369,2.94622108790052,4.74693581161327,0.633765858935825,1.27562579979026,2.09658645508376,5.05478840159228,4.20495299956218,3.37523732063868,1.99508920618874,1.59133341759272,0.547992461293902,1.75996244461323,1.09227722252426,0.889509253863555,0,1.60158394814405,1.72425731986345,0.661044872784862,0.954053754535364,1.1384259382189,0.587237189370939,1.14681968437569,2.64342657158052,1.68152568894461,1.05353633910031,0.590129310341499,0,0.616804496998528,0,0.32592226663359,0,0,0.445641827540694,0.589211814949674,0.443067789167242,0,0.128091319725675,0.520237390239513,0.493313713811028,0.552700035571697,0,0,0.535081656179426,1.04535523804977,0.226618685395132,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0.150575119077773,0.255973222308837,1.24930726552346,0.236777252044017,0,1.00803371612366,0.534880391567015,0.868946423296794,0,0.670700859703636,0.255725123687061,2.1686349143074,1.00267582127178,2.462390822334,0.795285947051099,0.486634870302636,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0.370784442784429,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0.694281003215189,0,0.419499436209906,0.275118041940067,0.417989933073621,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0.22452937262617,0,0,0,0.183201743930407,18.4492584410489,38.7780264148325,0,0,0.25326102332916,2.91300197789081,0.286836620748814,0.354668382198357,0,0,0.74000264525148,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0,0,0.298897361103602,0.117434498643765,0,0,0.408308342509787,0.245668634623536,0.103325781175765,0,0.494533858557114,0,1.43723628363248,0.168336113954066,0,0.554128230968366,0,0,0.45071417671979,0.226864366320042,0.89694817844431,0,0.211931901159562,0.900273288253207,0.412210116953756,1.28820270022815,0,0.168776332241266,0.292311015483596,1.7670364197088,0.552299391853796,1.77810662500693,1.42003837006646,0.403008392910561,0,0.57978255948989,0.272746120590835,0.286804595389004,0,0.265059536642971,0,0.10366105501537,0,0,1.56449532329816,0,0,1.39310378409594,0.721879481669586,0,0.505754070234305,0.482022059766964,0.330881918197182,0.435758888184812,0.71181185733329,0.404493924480493,0.392442930250692,0.38474715694639,0,0,0.4115740113314,0,2.53510069643662,0,2.95394953340702,0,0.737930631258681,0.171567810298526,0.548751427043128,0,0,0.0925884451585296,0,0,0,0,0.352226082707465,0.144366447761074,0,0.190254152234598,0,2.57545848628462,0,0,0,0,0.16798212819886,0.141775097242386,0.447792613514241,1.45316969256981,0,0.492663237895943,0.352193736052904,1.03664057770386,1.29707958075265,0.75745460055828,0.063497894292169,1.14596527667483,1.17217447210047,0,0.411309970813294,0.901029173531752,0.285826432630578,0,0,0,0.646358578788889,0,0.845302752556,0.26593811658487,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,1.74306691720059,0.299918973546171,0,1.50677127429638,0,0,0,0,0.723906533337896,1.02738161275192,0.895304816199478,0.112085143993527,1.97030760201927,1.94064817373566,1.54011643535698,0,0,0.773288812777695,0.167516265334349,0,13.4821264310493,8.97484377612075,21.5496066986738,0.24538298343828,0,0.271265023699736,1.45579603071565,0,0.630809660135739,0.702848489956279,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0.195801157462741,0,1.44737618286021,4.09856981555372,1.70764092485511,0,0,0,0.496215615637554,0.767309866440312,0.280660094433074,0.768834895534206,1.02341449813341,0,1.48418066444991,0.154209693802656,0.355123450626254,0.410635780069046,0,0.348631135379878,0,0.40101294060657,0.736647911487171,0.229628896329213,0.910455840033585,1.44236856455367,0,0.15403067420883,0,0,0.211103257785751,0,0.340187410553031,0.215915916102139,0,0,0,0,0.831076008928724,0,0.657779629937804,1.0457418040996,0,0,0,3.09123034943167,0.0915694648183434,0,0.574265537996172,0.650060246036521,0,0.193341436584244,0.154048617114644,0,0,0.214840489736547,0.290033387828457,0.340906509664404,0.356128142586949,0.826424576804891,0.192190067365106,1.78657797492418,0.910420027699949,0,1.5740617341532,0.6970372701606,0.924100740528266,0.532306030317022,1.7398659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0,0.0898252021065869,0,0,0.406896178315738,0,0.201273793591026,0.320568492303233 | |||
|short_description=p3@LOC100129387 | |||
}} |
Revision as of 07:19, 11 September 2013
Short description: | p3@LOC100129387 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LOC100129387_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 47bp_to_NR_024490, uc001zyh.3_5end |
EntrezGene: | LOC100129387 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.30e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.30e-48 | 42 |
defensive cell | 3.14e-42 | 48 |
phagocyte | 3.14e-42 | 48 |
myeloid leukocyte | 1.13e-39 | 72 |
granulocyte monocyte progenitor cell | 5.43e-33 | 67 |
macrophage dendritic cell progenitor | 8.32e-33 | 61 |
monopoietic cell | 1.02e-30 | 59 |
monocyte | 1.02e-30 | 59 |
monoblast | 1.02e-30 | 59 |
promonocyte | 1.02e-30 | 59 |
myeloid lineage restricted progenitor cell | 6.24e-30 | 66 |
myeloid cell | 1.09e-28 | 108 |
common myeloid progenitor | 1.09e-28 | 108 |
leukocyte | 2.81e-28 | 136 |
hematopoietic stem cell | 3.35e-24 | 168 |
hematopoietic cell | 1.16e-22 | 177 |
hematopoietic oligopotent progenitor cell | 2.96e-22 | 161 |
hematopoietic multipotent progenitor cell | 2.96e-22 | 161 |
hematopoietic lineage restricted progenitor cell | 1.63e-21 | 120 |
nongranular leukocyte | 2.00e-21 | 115 |
mesenchymal cell | 2.91e-17 | 354 |
connective tissue cell | 2.41e-16 | 361 |
motile cell | 3.98e-14 | 386 |
stem cell | 7.41e-14 | 441 |
multi fate stem cell | 9.86e-14 | 427 |
somatic stem cell | 4.12e-13 | 433 |
granulocyte | 1.35e-12 | 8 |
blood cell | 1.89e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.72e-37 | 98 |
blood island | 5.72e-37 | 98 |
hemolymphoid system | 3.66e-34 | 108 |
bone marrow | 9.68e-32 | 76 |
bone element | 3.36e-28 | 82 |
immune system | 3.29e-25 | 93 |
skeletal element | 3.07e-24 | 90 |
skeletal system | 8.90e-23 | 100 |
connective tissue | 1.30e-15 | 371 |
lateral plate mesoderm | 1.99e-15 | 203 |
musculoskeletal system | 4.89e-15 | 167 |
blood | 1.67e-10 | 15 |
haemolymphatic fluid | 1.67e-10 | 15 |
organism substance | 1.67e-10 | 15 |
mesoderm | 9.02e-08 | 315 |
mesoderm-derived structure | 9.02e-08 | 315 |
presumptive mesoderm | 9.02e-08 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.