FFCP PHASE1:Hg19::chr16:53133015..53133055,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80205|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25701|TSSclassifier=S|UniProt=Q8NAR9|association_with_transcript=-16bp_to_uc002egz.1_5end|coexpression_cluster_id=C17|description=CAGE_peak_7_at_CHD9_5end|id=chr16:53133015..53133055,+|ontology_enrichment_celltype=CL:0000839!6.83e-13!70;CL:0002194!1.52e-12!63;CL:0000576!1.52e-12!63;CL:0000040!1.52e-12!63;CL:0000559!1.52e-12!63;CL:0000557!1.98e-12!71;CL:0002057!7.81e-12!42;CL:0002009!1.35e-11!65;CL:0000766!4.34e-11!76;CL:0000860!1.43e-10!45;CL:0000034!1.78e-08!444;CL:0000048!3.00e-08!430;CL:0000723!4.28e-08!436;CL:0000144!8.85e-08!625|ontology_enrichment_celltype_v019=CL:0000473;2.44e-29;39!CL:0000234;2.44e-29;39!CL:0000860;3.02e-29;33!CL:0002057;3.02e-29;33!CL:0000576;2.22e-13;48!CL:0000235;6.61e-12;6!CL:0000766;7.14e-12;69!CL:0000515;1.54e-08;3|ontology_enrichment_celltype_v019_2=CL:0000473,4.01e-32,48;CL:0000234,4.01e-32,48;CL:0000839,7.31e-27,66;CL:0000557,2.41e-26,67;CL:0002194,3.64e-26,59;CL:0000576,3.64e-26,59;CL:0000040,3.64e-26,59;CL:0000559,3.64e-26,59;CL:0002009,4.52e-25,61;CL:0000766,5.66e-24,72;CL:0000860,2.15e-23,42;CL:0002057,2.15e-23,42;CL:0000763,2.00e-13,108;CL:0000049,2.00e-13,108;CL:0000235,7.04e-12,6;CL:0002031,2.41e-11,120;CL:0002087,5.09e-10,115;CL:0000738,5.47e-10,136;CL:0000048,3.75e-08,427;CL:0000034,5.34e-08,441;CL:0000723,7.53e-08,433;CL:0000134,4.84e-07,354;CL:0000219,7.17e-07,386;CL:0000037,9.60e-07,168|ontology_enrichment_development_v019=CL:0002057;1.70e-15;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002204!5.11e-14!167;UBERON:0001474!9.25e-14!86;UBERON:0002371!8.10e-13!80;UBERON:0004765!1.10e-12!101;UBERON:0001434!1.10e-12!101;UBERON:0002390!3.02e-08!102;UBERON:0003061!3.02e-08!102;UBERON:0002405!3.64e-07!115;UBERON:0002193!4.95e-07!112|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.36e-31,82;UBERON:0004765,2.19e-29,90;UBERON:0002371,9.45e-28,76;UBERON:0001434,1.79e-25,100;UBERON:0002405,4.18e-21,93;UBERON:0002390,1.36e-19,98;UBERON:0003061,1.36e-19,98;UBERON:0002204,1.70e-18,167;UBERON:0002193,5.39e-17,108;UBERON:0003081,1.10e-10,203;UBERON:0000926,1.38e-08,315;UBERON:0004120,1.38e-08,315;UBERON:0006603,1.38e-08,315|phase1_expression=0,0.214100523890983,0.563817616383885,0,0,0,0,0.631719873426831,0.522371256399677,0.245733936501509,0,0.655324116390517,0,0,0,0,0.602694528023977,0.730310090387373,0,0,0,0,0,0.410623275218653,0.125542639594803,0.764134057479513,0.57470412614962,0.629686250509434,0,0,0.619264493264304,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0.223915474239924,0.647787332037959,0.257575567634187,1.16318591023652,2.26725566213286,3.88134497900506,0.697287110717054,1.23350366406548,3.09706370895104,0.28769239232215,0.768482119587302,2.36482229888585,0.689491361473237,0,1.35426486594342,1.31769637679823,3.0019676506363,3.82029923556644,1.53041946185451,2.88836124368484,2.55734850319616,0.329851300186716,2.59302754908121,2.98357325372886,0.580418477257168,1.13477044938228,2.4912889959823,1.00499466102697,1.5644487552606,0.868755378820466,0,1.47311054395026,4.43047342417238,0,0,0.209658645508376,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0,2.43806866313962,1.34140171940727,0.383587685530591,0,0,0,3.1811437882044,0.973269740605272,0.378139268656271,0.443458794925128,0.527008714158756,0,0,0,0.324547393654683,0,1.06366368415092,0.715471872916026,1.14398982156026,0.371457501329565,0.39752481473341,0,0.347140501607594,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.12663051166458,1.32409180813219,0.860509862246441,0,0,0,0.49333509683432,0.933633106199299,0.404132016209064,1.30769522490767,1.21085942115945,2.30470369792,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0.280901613404497,0.816616685019573,0.122834317311768,0.309977343527296,1.18800285728205,0.247266929278557,0,0.718618141816238,0.336672227908132,0,0.831192346452549,0,0,0.600952235626387,0.680593098960126,0,0,0,0.300091096084402,0.103052529238439,0.515281080091258,0,0.168776332241266,0.292311015483596,0,0,0.161646056818812,0.355009592516614,0.201504196455281,0.508681776931463,0.193260853163297,1.63647672354501,0.286804595389004,0.121973706129595,0,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.514703430895577,0.219500570817251,0,0.201057944823262,0.0925884451585296,0,0,0,0.34779121492523,0.469634776943287,0,0,0,0,0,1.47730203652438,3.04205544681009,2.22946743433092,0,2.68771405118175,0.850650583454319,0.0895585227028483,0,0,108.385912337108,2.20121085033065,0.621984346622316,0,0.37872730027914,0.507983154337352,0.381988425558278,0,0,0,1.80205834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995018166751,0.924351257262837,0,0,0.109265571963696,0,0.305966489225945,0,0.275684698604535,0,0,0,0,0,0,0,0,0.124149428591716,0.112131862580613,0.25458863311266,0,0,0.342233301085281,0.134704106029175,0.215166616178029,0,0.162806537221949,0.213454691755431,0,0,0,0.122241444182866,0.813792356631477,0,0,0|short_description=p7@CHD9}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=80205 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25701 | |||
|TSSclassifier=S | |||
|UniProt=Q8NAR9 | |||
|association_with_transcript=-16bp_to_uc002egz.1_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_7_at_CHD9_5end | |||
|id=chr16:53133015..53133055,+ | |||
|ontology_enrichment_celltype=CL:0000839!6.83e-13!70;CL:0002194!1.52e-12!63;CL:0000576!1.52e-12!63;CL:0000040!1.52e-12!63;CL:0000559!1.52e-12!63;CL:0000557!1.98e-12!71;CL:0002057!7.81e-12!42;CL:0002009!1.35e-11!65;CL:0000766!4.34e-11!76;CL:0000860!1.43e-10!45;CL:0000034!1.78e-08!444;CL:0000048!3.00e-08!430;CL:0000723!4.28e-08!436;CL:0000144!8.85e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.44e-29;39!CL:0000234;2.44e-29;39!CL:0000860;3.02e-29;33!CL:0002057;3.02e-29;33!CL:0000576;2.22e-13;48!CL:0000235;6.61e-12;6!CL:0000766;7.14e-12;69!CL:0000515;1.54e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.01e-32,48;CL:0000234,4.01e-32,48;CL:0000839,7.31e-27,66;CL:0000557,2.41e-26,67;CL:0002194,3.64e-26,59;CL:0000576,3.64e-26,59;CL:0000040,3.64e-26,59;CL:0000559,3.64e-26,59;CL:0002009,4.52e-25,61;CL:0000766,5.66e-24,72;CL:0000860,2.15e-23,42;CL:0002057,2.15e-23,42;CL:0000763,2.00e-13,108;CL:0000049,2.00e-13,108;CL:0000235,7.04e-12,6;CL:0002031,2.41e-11,120;CL:0002087,5.09e-10,115;CL:0000738,5.47e-10,136;CL:0000048,3.75e-08,427;CL:0000034,5.34e-08,441;CL:0000723,7.53e-08,433;CL:0000134,4.84e-07,354;CL:0000219,7.17e-07,386;CL:0000037,9.60e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;1.70e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!5.11e-14!167;UBERON:0001474!9.25e-14!86;UBERON:0002371!8.10e-13!80;UBERON:0004765!1.10e-12!101;UBERON:0001434!1.10e-12!101;UBERON:0002390!3.02e-08!102;UBERON:0003061!3.02e-08!102;UBERON:0002405!3.64e-07!115;UBERON:0002193!4.95e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.36e-31,82;UBERON:0004765,2.19e-29,90;UBERON:0002371,9.45e-28,76;UBERON:0001434,1.79e-25,100;UBERON:0002405,4.18e-21,93;UBERON:0002390,1.36e-19,98;UBERON:0003061,1.36e-19,98;UBERON:0002204,1.70e-18,167;UBERON:0002193,5.39e-17,108;UBERON:0003081,1.10e-10,203;UBERON:0000926,1.38e-08,315;UBERON:0004120,1.38e-08,315;UBERON:0006603,1.38e-08,315 | |||
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| |||
|short_description=p7@CHD9 | |||
}} |
Revision as of 10:41, 11 September 2013
Short description: | p7@CHD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_CHD9_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -16bp_to_uc002egz.1_5end |
EntrezGene: | CHD9 |
HGNC: | 25701 |
UniProt: | Q8NAR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.01e-32 | 48 |
phagocyte | 4.01e-32 | 48 |
myeloid lineage restricted progenitor cell | 7.31e-27 | 66 |
granulocyte monocyte progenitor cell | 2.41e-26 | 67 |
monopoietic cell | 3.64e-26 | 59 |
monocyte | 3.64e-26 | 59 |
monoblast | 3.64e-26 | 59 |
promonocyte | 3.64e-26 | 59 |
macrophage dendritic cell progenitor | 4.52e-25 | 61 |
myeloid leukocyte | 5.66e-24 | 72 |
classical monocyte | 2.15e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.15e-23 | 42 |
myeloid cell | 2.00e-13 | 108 |
common myeloid progenitor | 2.00e-13 | 108 |
macrophage | 7.04e-12 | 6 |
hematopoietic lineage restricted progenitor cell | 2.41e-11 | 120 |
nongranular leukocyte | 5.09e-10 | 115 |
leukocyte | 5.47e-10 | 136 |
multi fate stem cell | 3.75e-08 | 427 |
stem cell | 5.34e-08 | 441 |
somatic stem cell | 7.53e-08 | 433 |
mesenchymal cell | 4.84e-07 | 354 |
motile cell | 7.17e-07 | 386 |
hematopoietic stem cell | 9.60e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone element | 5.36e-31 | 82 |
skeletal element | 2.19e-29 | 90 |
bone marrow | 9.45e-28 | 76 |
skeletal system | 1.79e-25 | 100 |
immune system | 4.18e-21 | 93 |
hematopoietic system | 1.36e-19 | 98 |
blood island | 1.36e-19 | 98 |
musculoskeletal system | 1.70e-18 | 167 |
hemolymphoid system | 5.39e-17 | 108 |
lateral plate mesoderm | 1.10e-10 | 203 |
mesoderm | 1.38e-08 | 315 |
mesoderm-derived structure | 1.38e-08 | 315 |
presumptive mesoderm | 1.38e-08 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.