FFCP PHASE1:Hg19::chr19:59055412..59055468,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10155|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16384|TSSclassifier=S|UniProt=Q13263|association_with_transcript=-367bp_to_ENST00000253024,ENST00000341753,NM_005762,uc002qtg.1,uc010eut.1_5end|description=CAGE_peak_2_at_TRIM28_5end|id=chr19:59055412..59055468,+|ontology_enrichment_celltype=CL:0000860!3.01e-21!45;CL:0002057!8.17e-21!42;CL:0002009!1.58e-16!65;CL:0000766!1.81e-16!76;CL:0002194!4.58e-16!63;CL:0000576!4.58e-16!63;CL:0000040!4.58e-16!63;CL:0000559!4.58e-16!63;CL:0000557!7.99e-13!71;CL:0000839!1.96e-12!70;CL:0000763!2.06e-08!112;CL:0000049!2.06e-08!112|ontology_enrichment_celltype_v019=CL:0000860;9.74e-18;33!CL:0002057;9.74e-18;33!CL:0000473;2.63e-13;39!CL:0000234;2.63e-13;39!CL:0000576;1.67e-12;48!CL:0000766;1.63e-08;69|ontology_enrichment_celltype_v019_2=CL:0000860,2.78e-21,42;CL:0002057,2.78e-21,42;CL:0000473,4.65e-19,48;CL:0000234,4.65e-19,48;CL:0000766,2.86e-16,72;CL:0002009,3.37e-16,61;CL:0002194,9.91e-16,59;CL:0000576,9.91e-16,59;CL:0000040,9.91e-16,59;CL:0000559,9.91e-16,59;CL:0000557,1.10e-12,67;CL:0000839,3.95e-12,66;CL:0000763,6.55e-08,108;CL:0000049,6.55e-08,108|ontology_enrichment_development_v019=CL:0002057;1.01e-15;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!3.03e-17!659;UBERON:0000062!1.97e-16!511;UBERON:0000467!5.52e-14!625;UBERON:0000480!6.88e-14!626;UBERON:0000922!2.89e-13!612;UBERON:0002050!6.70e-11!605;UBERON:0005423!6.70e-11!605;UBERON:0000923!8.08e-11!604;UBERON:0005291!8.08e-11!604;UBERON:0006598!8.08e-11!604;UBERON:0002532!8.08e-11!604;UBERON:0002371!5.13e-10!80;UBERON:0001474!8.51e-08!86;UBERON:0000926!1.87e-07!448;UBERON:0004120!1.87e-07!448;UBERON:0006603!1.87e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000922,3.38e-12,592;UBERON:0005423,4.61e-10,581;UBERON:0002050,9.33e-10,564;UBERON:0002371,1.44e-09,76;UBERON:0000923,2.26e-09,560;UBERON:0010316,2.26e-09,560;UBERON:0005291,2.26e-09,560;UBERON:0006598,2.26e-09,560;UBERON:0010317,2.26e-09,560;UBERON:0002532,2.26e-09,560;UBERON:0001474,2.52e-07,82;UBERON:0004765,2.60e-07,90|phase1_expression=2.90685406832891,2.35510576280081,3.38290569830331,3.00219895059391,2.23480547213644,1.74467704820074,10.1319951267324,2.52687949370732,4.96252693579693,1.22866968250754,2.79120467188971,3.49506195408276,5.80287352102598,2.47532705920093,2.31978163009541,2.01697543935533,1.20538905604795,1.46062018077475,0.975865597581014,0.984968464614303,1.42800483870977,2.19418305034661,0,1.50561867580173,0.251085279189606,0.458480434487708,0.164201178899891,0.472264687882075,4.32700704533794,2.30297638858328,4.33485145285013,3.67768489791571,3.91567694411725,3.32778609150109,0.154934401160603,0,0.587200878669695,6.09394949385065,4.21143339687298,3.68918480216948,4.47830948479849,1.6194683300949,2.57575567634187,6.39752250630085,7.17964293008738,7.27752183563449,7.67015821788759,6.16751832032739,7.43295290148249,6.90461741573161,4.86705342405291,6.3850202069918,6.20542225325913,8.39130088658974,8.12558919566051,6.96496656307637,6.82265375144614,7.64059847113288,9.79468455586888,6.41858054152187,8.31138263538754,6.92687730392104,2.19410023383795,7.2458207590558,10.7377418292576,3.97169657283798,6.22822248995575,5.27622197039161,4.69334626578181,4.99534342821768,6.65939452896706,9.57521853567668,3.48108626184973,3.38008458099107,3.82687739937078,2.72556239160889,3.36985893439485,4.95583746376971,2.25015821375912,2.56511469367124,1.79025009479181,4.56660384411585,1.75996244461323,0.546138611262131,0,0.853460445133014,0,0.574752439954483,0,0,0,0,0,0,1.68152568894461,0.263384084775077,0.393419540227666,0.786021525498329,0,0.167186495390678,0,0.473447805734733,0,0.222820913770347,0,0.221533894583621,0,0,0.130059347559878,0.164437904603676,0,0.289803085735052,0.14828656316206,0,1.04535523804977,0.679856056185397,1.53288197440768,0,0,0,0,0,0.451725357233318,0.255973222308837,1.24930726552346,0,0,0,0.267440195783507,0.289648807765598,0,1.34140171940727,2.04580098949649,1.0843174571537,2.50668955317945,0.869079113764942,0.795285947051099,1.94653948121054,1.41802225746102,0.665188192387692,1.14185221401064,3.86388272718252,4.00724817121796,2.59549109949101,2.27183175558278,1.74129737299267,2.6591592103773,0.238490624305342,0,1.11437250398869,1.19257444420023,3.4409383804245,1.38856200643038,1.69592382577203,1.25849830862972,2.75118041940067,3.13492449805216,1.55050055501597,1.06729878806013,0.33472061276467,1.61131726843659,0.760272105718513,1.70843440283719,0.367663080345869,0.81014194788176,0.535798369704479,1.12264686313085,0.788280363383256,1.53316637465883,3.79706263827252,2.74802615895611,9.22462922052443,7.75560528296651,3.92484646928281,2.48485975847659,1.39293562831038,2.38336525463794,2.29469296599051,1.41867352879343,1.68203280042692,2.1349799145941,2.71334303258876,1.55605517699883,1.34710672069688,1.30769522490767,1.51357427644931,4.609407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89941367,1.82631744101899,0.431855182437243,0.47775168788705,4.28859265059938,1.73814972905999,0.697448552208751,0.347716544605159,2.40513409419076,0.828864656652147,2.3900586793153,2.07377898544228,7.31386509994472,0.118332000730565,0.170426809518315,5.50403165248208,9.39338161030605,2.48165108531456,0.955538938977433,2.57267493134922,0.392600934460972,2.31644057466312,0.647428837187895,1.53994210284371,0,3.39997695141398,5.38060765962843,2.78531085225916,1.42704108933082,0.79062257427272,3.51809653585373,1.35866559210006,3.39566295674957,2.40415516554353,3.76253837089218,3.18692818280077,2.35676547101626,2.1593931382644,1.78227840196252,2.5359343655004,0.679708458751268,1.50374268767766,0.966868319603658,0.399764623699716,1.42843150884526,0.705789743431384,7.38220573540348,1.46067277649303,5.96348068425903,3.01013124618048,1.26217249754548,2.71965960763659,2.18175345170189,2.1161073620616,1.48798007266701,0.924351257262837,1.29787968637137,2.14482922219634,1.96678029534652,1.14028650910293,1.63182127587171,2.13773924212448,3.85958578046349,2.25636785363138,4.84983668596732,8.03892390468535,2.48750831837634,2.79269088827117,4.26467963801962,2.61870874610114,0.775066918032073,1.11734485732544,0.448527450322454,5.41000845364402,3.23387502333151,3.26575121845442,1.36893320434112,1.68380132536469,4.01644350198988,1.33064142618405,1.13964576055364,0.320182037633146,1.9307228228694,0.988077223172456,7.03922827210363,2.44482888365733,2.03448089157869,1.99727032255654,2.41528552309231,0.320568492303233|short_description=p2@TRIM28}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=10155 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16384 | |||
|TSSclassifier=S | |||
|UniProt=Q13263 | |||
|association_with_transcript=-367bp_to_ENST00000253024,ENST00000341753,NM_005762,uc002qtg.1,uc010eut.1_5end | |||
|description=CAGE_peak_2_at_TRIM28_5end | |||
|id=chr19:59055412..59055468,+ | |||
|ontology_enrichment_celltype=CL:0000860!3.01e-21!45;CL:0002057!8.17e-21!42;CL:0002009!1.58e-16!65;CL:0000766!1.81e-16!76;CL:0002194!4.58e-16!63;CL:0000576!4.58e-16!63;CL:0000040!4.58e-16!63;CL:0000559!4.58e-16!63;CL:0000557!7.99e-13!71;CL:0000839!1.96e-12!70;CL:0000763!2.06e-08!112;CL:0000049!2.06e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.74e-18;33!CL:0002057;9.74e-18;33!CL:0000473;2.63e-13;39!CL:0000234;2.63e-13;39!CL:0000576;1.67e-12;48!CL:0000766;1.63e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.78e-21,42;CL:0002057,2.78e-21,42;CL:0000473,4.65e-19,48;CL:0000234,4.65e-19,48;CL:0000766,2.86e-16,72;CL:0002009,3.37e-16,61;CL:0002194,9.91e-16,59;CL:0000576,9.91e-16,59;CL:0000040,9.91e-16,59;CL:0000559,9.91e-16,59;CL:0000557,1.10e-12,67;CL:0000839,3.95e-12,66;CL:0000763,6.55e-08,108;CL:0000049,6.55e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.01e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.03e-17!659;UBERON:0000062!1.97e-16!511;UBERON:0000467!5.52e-14!625;UBERON:0000480!6.88e-14!626;UBERON:0000922!2.89e-13!612;UBERON:0002050!6.70e-11!605;UBERON:0005423!6.70e-11!605;UBERON:0000923!8.08e-11!604;UBERON:0005291!8.08e-11!604;UBERON:0006598!8.08e-11!604;UBERON:0002532!8.08e-11!604;UBERON:0002371!5.13e-10!80;UBERON:0001474!8.51e-08!86;UBERON:0000926!1.87e-07!448;UBERON:0004120!1.87e-07!448;UBERON:0006603!1.87e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,3.38e-12,592;UBERON:0005423,4.61e-10,581;UBERON:0002050,9.33e-10,564;UBERON:0002371,1.44e-09,76;UBERON:0000923,2.26e-09,560;UBERON:0010316,2.26e-09,560;UBERON:0005291,2.26e-09,560;UBERON:0006598,2.26e-09,560;UBERON:0010317,2.26e-09,560;UBERON:0002532,2.26e-09,560;UBERON:0001474,2.52e-07,82;UBERON:0004765,2.60e-07,90 | |||
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| |||
|short_description=p2@TRIM28 | |||
}} |
Revision as of 22:41, 11 September 2013
Short description: | p2@TRIM28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TRIM28_5end |
Coexpression cluster: | NA |
Association with transcript: | -367bp_to_ENST00000253024, ENST00000341753, NM_005762, uc002qtg.1, uc010eut.1_5end |
EntrezGene: | TRIM28 |
HGNC: | 16384 |
UniProt: | Q13263 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.78e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.78e-21 | 42 |
defensive cell | 4.65e-19 | 48 |
phagocyte | 4.65e-19 | 48 |
myeloid leukocyte | 2.86e-16 | 72 |
macrophage dendritic cell progenitor | 3.37e-16 | 61 |
monopoietic cell | 9.91e-16 | 59 |
monocyte | 9.91e-16 | 59 |
monoblast | 9.91e-16 | 59 |
promonocyte | 9.91e-16 | 59 |
granulocyte monocyte progenitor cell | 1.10e-12 | 67 |
myeloid lineage restricted progenitor cell | 3.95e-12 | 66 |
myeloid cell | 6.55e-08 | 108 |
common myeloid progenitor | 6.55e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
embryo | 3.38e-12 | 592 |
developing anatomical structure | 4.61e-10 | 581 |
embryonic structure | 9.33e-10 | 564 |
bone marrow | 1.44e-09 | 76 |
germ layer | 2.26e-09 | 560 |
germ layer / neural crest | 2.26e-09 | 560 |
embryonic tissue | 2.26e-09 | 560 |
presumptive structure | 2.26e-09 | 560 |
germ layer / neural crest derived structure | 2.26e-09 | 560 |
epiblast (generic) | 2.26e-09 | 560 |
bone element | 2.52e-07 | 82 |
skeletal element | 2.60e-07 | 90 |
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