FFCP PHASE1:Hg19::chr2:20212422..20212436,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4148 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6909 | |||
|TSSclassifier=S | |||
|UniProt=B2CPU0 | |||
|association_with_transcript=0bp_to_ENST00000421259_5end | |||
|description=CAGE_peak_1_at_MATN3_5end | |||
|id=chr2:20212422..20212436,- | |||
|ontology_enrichment_celltype=CL:0000055!8.54e-11!180;CL:0002321!1.21e-09!248;CL:0000220!2.64e-09!246;CL:1000449!9.15e-09!16;CL:1000497!3.04e-08!18;CL:0002518!3.04e-08!18;CL:0000222!8.79e-08!119;CL:1000507!1.60e-07!12;CL:1000494!1.60e-07!12;CL:0002681!3.10e-07!13;CL:0002584!3.10e-07!13;CL:0000066!8.54e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.34e-10;15!CL:1000497;7.41e-10;17!CL:0002518;7.41e-10;17!CL:1000507;2.01e-08;10!CL:1000494;2.01e-08;10!CL:0002681;2.85e-08;12!CL:0002584;2.85e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,4.24e-10,15;CL:1000497,9.48e-10,17;CL:0002518,9.48e-10,17;CL:1000507,2.38e-08,10;CL:1000494,2.38e-08,10;CL:0002681,3.27e-08,12;CL:0002584,3.27e-08,12;CL:0000222,5.23e-07,121;CL:0002321,6.60e-07,250;CL:0002334,7.47e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.12e-22!365;UBERON:0000119!7.40e-18!312;UBERON:0000483!5.17e-17!309;UBERON:0000468!3.16e-12!659;UBERON:0002100!2.31e-11!216;UBERON:0000481!3.43e-11!347;UBERON:0005743!9.87e-11!86;UBERON:0001017!4.81e-10!82;UBERON:0000955!5.63e-10!69;UBERON:0006238!5.63e-10!69;UBERON:0002616!9.56e-10!59;UBERON:0000477!9.75e-10!286;UBERON:0004111!1.04e-09!241;UBERON:0000025!1.56e-09!194;UBERON:0000073!2.58e-09!94;UBERON:0001016!2.58e-09!94;UBERON:0004211!9.15e-09!16;UBERON:0001285!9.15e-09!16;UBERON:0007684!9.15e-09!16;UBERON:0003220!9.15e-09!16;UBERON:0004208!9.15e-09!16;UBERON:0003075!1.14e-08!86;UBERON:0007284!1.14e-08!86;UBERON:0001049!1.64e-08!57;UBERON:0005068!1.64e-08!57;UBERON:0006241!1.64e-08!57;UBERON:0007135!1.64e-08!57;UBERON:0000033!2.15e-08!123;UBERON:0000064!2.91e-08!219;UBERON:0006554!3.24e-08!44;UBERON:0006555!3.80e-08!17;UBERON:0005103!3.80e-08!17;UBERON:0000083!3.80e-08!17;UBERON:0009201!3.80e-08!17;UBERON:0004819!3.80e-08!17;UBERON:0006553!3.80e-08!17;UBERON:0003074!3.80e-08!17;UBERON:0003060!3.80e-08!17;UBERON:0001008!3.86e-08!45;UBERON:0000080!4.00e-08!18;UBERON:0002120!4.00e-08!18;UBERON:0004875!4.00e-08!18;UBERON:0005721!4.00e-08!18;UBERON:0005754!4.00e-08!18;UBERON:0007297!4.00e-08!18;UBERON:0002346!5.09e-08!90;UBERON:0000153!1.14e-07!129;UBERON:0007811!1.14e-07!129;UBERON:0009569!1.55e-07!113;UBERON:0000922!1.59e-07!612;UBERON:0009773!1.60e-07!12;UBERON:0001231!1.60e-07!12;UBERON:0004810!1.60e-07!12;UBERON:0005256!2.02e-07!143;UBERON:0001225!3.10e-07!13;UBERON:0008987!3.10e-07!13;UBERON:0004876!3.89e-07!20;UBERON:0003056!5.76e-07!61;UBERON:0002050!7.10e-07!605;UBERON:0005423!7.10e-07!605;UBERON:0000467!7.94e-07!625;UBERON:0003064!8.44e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.34e-10;15!UBERON:0004819;3.34e-10;15!UBERON:0001285;3.34e-10;15!UBERON:0007684;3.34e-10;15!UBERON:0006554;1.79e-09;30!UBERON:0001008;1.79e-09;30!UBERON:0000489;1.67e-08;29!UBERON:0004211;2.01e-08;10!UBERON:0009773;2.01e-08;10!UBERON:0001231;2.01e-08;10!UBERON:0004810;2.01e-08;10!UBERON:0002113;2.30e-08;24!UBERON:0011143;2.30e-08;24!UBERON:0001225;2.85e-08;12!UBERON:0008987;2.85e-08;12!UBERON:0000353;8.36e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,8.66e-12,309;UBERON:0000483,5.00e-11,306;UBERON:0004211,4.24e-10,15;UBERON:0009773,4.24e-10,15;UBERON:0001231,4.24e-10,15;UBERON:0001285,4.24e-10,15;UBERON:0007684,4.24e-10,15;UBERON:0004208,4.24e-10,15;UBERON:0006554,2.06e-09,47;UBERON:0002100,2.17e-09,199;UBERON:0006555,4.37e-09,16;UBERON:0004819,4.37e-09,16;UBERON:0009569,5.66e-09,112;UBERON:0001008,5.68e-09,48;UBERON:0001017,1.49e-08,81;UBERON:0004810,2.38e-08,10;UBERON:0001225,3.27e-08,12;UBERON:0008987,3.27e-08,12;UBERON:0000955,4.69e-08,68;UBERON:0006238,4.69e-08,68;UBERON:0000489,6.22e-08,31;UBERON:0002113,1.22e-07,26;UBERON:0003918,1.22e-07,26;UBERON:0011143,1.22e-07,26;UBERON:0005095,1.22e-07,26;UBERON:0007687,1.22e-07,26;UBERON:0001016,3.52e-07,89;UBERON:0003104,4.06e-07,160;UBERON:0009142,4.06e-07,160;UBERON:0000025,4.94e-07,192;UBERON:0001049,5.99e-07,56;UBERON:0005068,5.99e-07,56;UBERON:0006241,5.99e-07,56;UBERON:0007135,5.99e-07,56;UBERON:0000353,8.09e-07,15 | |||
|phase1_expression=13.8075568245623,4.71021152560163,15.9278476628447,12.0087958023756,39.7795374040286,10.4680622892044,5.06599756336621,1.89515962028049,0.261185628199839,2.45733936501509,1.39560233594486,3.9319446983431,12.6608149549658,2.35156070624089,2.65117900582333,0,0.602694528023977,0,0,5.66356867153224,5.30401797235058,9.71709636582072,1.43117993565528,3.83248390204076,3.13856598987007,0,0,0,0,0,0,0,0.30120591877825,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,4.02420515822182,1.2786256184353,2.89151321907653,2.00535164254356,1.59331170856906,0.795285947051099,41.363963975724,0.661743720148475,2.21729397462564,0.966182642624386,2.0956652079634,1.09288586487763,0,0,0,0,0,0,0,0.993812036833525,0,1.38856200643038,0.56530794192401,2.09749718104953,2.75118041940067,0.626984899610432,0.516833518338658,1.42306505074684,1.00416183829401,2.41697590265488,1.52054421143703,0.976248230192678,2.57364156242108,1.62028389576352,2.85759130509055,3.14341121676638,1.46394924628319,0,0.949265659568129,2.5648244150257,0,0,3.92484646928281,1.98788780678127,1.2663051166458,0.132409180813219,2.0078563452417,1.41867352879343,1.12135520028461,0,0.49333509683432,0.311211035399766,1.48181739276657,2.45192854670188,13.4708110603989,6.33793516927999,0.937285727335186,0,0.570471821544449,0.149448680551801,0.587172493218824,1.13311061057692,0.98315564691574,0.204154171254893,1.10550885580591,0.206651562351531,0,0.494533858557114,0.910161361938026,5.03032699271367,1.34668891163253,0.250237039743928,0.554128230968366,0.877955241761676,0,0.600952235626387,1.81491493056034,0.89694817844431,0,0.635795703478686,3.00091096084402,0.309157587715317,1.54584324027377,1.30281799432113,1.68776332241266,0.487185025805993,1.00973509697646,0.276149695926898,0.161646056818812,1.77504796258307,0.403008392910561,0.67824236924195,0.57978255948989,0.545492241181669,0.860413786167011,2.07355300420312,1.98794652482228,0.580969714347592,1.34759371519982,0.504641701751257,1.09493207722749,3.12899064659632,3.85944562915731,4.14404764057442,0.464367928031979,1.44375896333917,0,0.337169380156203,0,0.441175890929576,0.435758888184812,0.949082476444386,0.404493924480493,0,0,0,2.80483547606892,0.8231480226628,2.94017422771084,0,0,0,0,7.74827162821615,1.88724591328378,0.658501712451753,1.1240175325762,0.301586917234893,1.11106134190236,0.651616610620649,3.11980435583874,1.44331342025273,0.463721619900307,3.52226082707465,1.58803092537181,3.24089858803628,3.23432058798817,5.53143078571493,9.4433477830436,0,0,0,0,3.35964256397719,1.41775097242386,0.895585227028483,0.581267877027924,0,0,0.176096868026452,0,0.144119953416961,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0.285826432630578,3.58819469905154,3.48768055066624,1.6134422880609,1.93907573636667,7.15312891703765,2.535908257668,1.32969058292435,1.04007436911366,1.54324424557285,1.41849132023278,1.3321108950805,0.428933980974443,3.7983512377401,9.05564370458846,2.93162565864362,0,5.543663110534,0,0.871533458600294,0.599837947092342,0,0,0,0.479249710983165,1.14861935834114,2.85273810081437,1.73737568001095,0.61642896765115,2.14873155887875,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,4.78496817704646,8.50289885801451,2.17012018959788,0.831883446123229,0,1.57702415033935,1.05427273493442,4.21324539618807,6.82222512167955,4.1389228517002,0.664225598535437,1.10621501125022,0.955719759148911,1.76221041716467,3.77457766191941,0,0,0,0,3.32870879020994,1.81434175997808,6.4508030032882,8.5938705041315,7.29716245525991,4.86928767171664,8.18731598506726,15.4419764297863,4.45254199334973,1.85051632563187,2.30830242907065,0.9033987161519,4.15403543346897,1.74315567689939,9.54789651773816,3.20810352485256,0.368323955743585,0.918515585316854,3.27764102412091,0.786746489756545,5.86559496779635,6.00719629414435,2.35304930753057,14.6139224653261,8.12747542475143,9.09867072567173,2.2112181685947,6.0456456508599,1.54227252690289,3.25135725052623,4.51520796469368,10.1950509218015,5.81753206250107,13.2086105286085,0,0,0.769350375349168,3.28014645699706,4.55529752530024,0.515205058238611,0.0915694648183434,0.577566499444116,2.29706215198469,1.30012049207304,0,0.96670718292122,2.46477787383431,3.83759186815324,4.54860689198951,4.51165028446749,7.25083469571143,2.13066568540252,2.58192903375538,0.165284915360978,7.49541262723914,3.57315594984836,2.12431339796655,0,5.98143458978216,0,0.308033580176089,0,1.73986598415015,0.55597265731176,1.00187420719394,13.0255429275884,1.2655176988749,2.66882271493355,1.27948895655667,2.56763392820352,0.95460974377781,0,2.69808686374972,1.37268514868027,2.70968525395079,0.202182481573316,0,1.68503382495592,2.92580243453754,0.974853958525138,0,2.45699840534374,1.1312434556297,0,1.10273068709225,0.66343897524122,0,1.15755106853338,0.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| |||
|short_description=p1@MATN3 | |||
}} |
Revision as of 16:02, 12 September 2013
Short description: | p1@MATN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MATN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000421259_5end |
EntrezGene: | MATN3 |
HGNC: | 6909 |
UniProt: | B2CPU0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 4.24e-10 | 15 |
kidney cell | 9.48e-10 | 17 |
kidney epithelial cell | 9.48e-10 | 17 |
kidney tubule cell | 2.38e-08 | 10 |
nephron tubule epithelial cell | 2.38e-08 | 10 |
kidney cortical cell | 3.27e-08 | 12 |
renal cortical epithelial cell | 3.27e-08 | 12 |
mesodermal cell | 5.23e-07 | 121 |
embryonic cell | 6.60e-07 | 250 |
preadipocyte | 7.47e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell layer | 8.66e-12 | 309 |
epithelium | 5.00e-11 | 306 |
nephron epithelium | 4.24e-10 | 15 |
renal tubule | 4.24e-10 | 15 |
nephron tubule | 4.24e-10 | 15 |
nephron | 4.24e-10 | 15 |
uriniferous tubule | 4.24e-10 | 15 |
nephrogenic mesenchyme | 4.24e-10 | 15 |
urinary system structure | 2.06e-09 | 47 |
trunk | 2.17e-09 | 199 |
excretory tube | 4.37e-09 | 16 |
kidney epithelium | 4.37e-09 | 16 |
subdivision of trunk | 5.66e-09 | 112 |
renal system | 5.68e-09 | 48 |
central nervous system | 1.49e-08 | 81 |
nephron tubule epithelium | 2.38e-08 | 10 |
cortex of kidney | 3.27e-08 | 12 |
renal parenchyma | 3.27e-08 | 12 |
brain | 4.69e-08 | 68 |
future brain | 4.69e-08 | 68 |
cavitated compound organ | 6.22e-08 | 31 |
kidney | 1.22e-07 | 26 |
kidney mesenchyme | 1.22e-07 | 26 |
upper urinary tract | 1.22e-07 | 26 |
kidney rudiment | 1.22e-07 | 26 |
kidney field | 1.22e-07 | 26 |
nervous system | 3.52e-07 | 89 |
mesenchyme | 4.06e-07 | 160 |
entire embryonic mesenchyme | 4.06e-07 | 160 |
tube | 4.94e-07 | 192 |
neural tube | 5.99e-07 | 56 |
neural rod | 5.99e-07 | 56 |
future spinal cord | 5.99e-07 | 56 |
neural keel | 5.99e-07 | 56 |
parenchyma | 8.09e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.