FFCP PHASE1:Hg19::chr2:219472540..219472558,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84812|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9062|TSSclassifier=S|UniProt=|association_with_transcript=-19bp_to_ENST00000483685_5end|coexpression_cluster_id=C40|description=CAGE_peak_5_at_PLCD4_5end|id=chr2:219472540..219472558,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002567;7.26e-08;3|ontology_enrichment_celltype_v019_2=CL:0002567,7.26e-08,3|ontology_enrichment_development_v019=UBERON:0003056;5.18e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.20e-12!115;UBERON:0000475!1.62e-08!365;UBERON:0000481!1.38e-07!347|ontology_enrichment_uberon_v019=UBERON:0001905;7.33e-41;2!UBERON:0002757;7.33e-41;2!UBERON:0010134;7.33e-41;2!UBERON:0005408;7.33e-41;2!UBERON:0001899;7.33e-41;2!UBERON:0003296;5.17e-21;4!UBERON:0010133;5.17e-21;4!UBERON:0002784;5.17e-21;4!UBERON:0000996;6.31e-21;1!UBERON:0001389;6.31e-21;1!UBERON:0000026;6.31e-21;1!UBERON:0008784;6.31e-21;1!UBERON:0006058;6.31e-21;1!UBERON:0003663;6.31e-21;1!UBERON:0004256;6.31e-21;1!UBERON:0004708;6.31e-21;1!UBERON:0002101;6.31e-21;1!UBERON:0004709;6.31e-21;1!UBERON:0002529;6.31e-21;1!UBERON:0010538;6.31e-21;1!UBERON:0003661;6.31e-21;1!UBERON:0010890;6.31e-21;1!UBERON:0002471;6.31e-21;1!UBERON:0001383;6.31e-21;1!UBERON:0010758;6.31e-21;1!UBERON:0010707;6.31e-21;1!UBERON:0000978;6.31e-21;1!UBERON:0002103;6.31e-21;1!UBERON:0001665;6.31e-21;1!UBERON:0003823;6.31e-21;1!UBERON:0000154;6.31e-21;1!UBERON:0010709;6.31e-21;1!UBERON:0001894;1.89e-12;7!UBERON:0005090;3.70e-11;2!UBERON:0001630;3.70e-11;2!UBERON:0000020;1.83e-08;23!UBERON:0001032;3.91e-08;24!UBERON:0004456;3.91e-08;24!UBERON:0001723;7.26e-08;3!UBERON:0001033;7.26e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.33e-41,2;UBERON:0002757,7.33e-41,2;UBERON:0010134,7.33e-41,2;UBERON:0005408,7.33e-41,2;UBERON:0001899,7.33e-41,2;UBERON:0005418,4.22e-21,1;UBERON:0001389,4.22e-21,1;UBERON:0000026,4.22e-21,1;UBERON:0008784,4.22e-21,1;UBERON:0006058,4.22e-21,1;UBERON:0003663,4.22e-21,1;UBERON:0004256,4.22e-21,1;UBERON:0004708,4.22e-21,1;UBERON:0002101,4.22e-21,1;UBERON:0004709,4.22e-21,1;UBERON:0002529,4.22e-21,1;UBERON:0010538,4.22e-21,1;UBERON:0003661,4.22e-21,1;UBERON:0010890,4.22e-21,1;UBERON:0002471,4.22e-21,1;UBERON:0001383,4.22e-21,1;UBERON:0004357,4.22e-21,1;UBERON:0004347,4.22e-21,1;UBERON:0005420,4.22e-21,1;UBERON:0005732,4.22e-21,1;UBERON:0010758,4.22e-21,1;UBERON:0010707,4.22e-21,1;UBERON:0000978,4.22e-21,1;UBERON:0002103,4.22e-21,1;UBERON:0001665,4.22e-21,1;UBERON:0003823,4.22e-21,1;UBERON:0000154,4.22e-21,1;UBERON:0010709,4.22e-21,1;UBERON:0005733,4.22e-21,1;UBERON:0005730,4.22e-21,1;UBERON:0000996,5.16e-21,1;UBERON:0003296,5.17e-21,4;UBERON:0010133,5.17e-21,4;UBERON:0002784,5.17e-21,4;UBERON:0001894,1.89e-12,7;UBERON:0006222,1.89e-12,7;UBERON:0005090,3.02e-11,2;UBERON:0001630,3.02e-11,2;UBERON:0000020,4.10e-08,24;UBERON:0001032,4.10e-08,24;UBERON:0004456,4.10e-08,24;UBERON:0001723,8.29e-08,3;UBERON:0001033,8.29e-08,3;UBERON:0010056,8.29e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0.193260853163297,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,0,0,0,0,0,0,0.115930404975077,0,0,0.462985512576611,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.0895585227028483,0,0,0,0,0,0,0,0,0,1.17217447210047,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0.184369168541703,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.193341436584244,0.154048617114644,0,0.137836572484531,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.591860433821602,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84812 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9062 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_ENST00000483685_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_5_at_PLCD4_5end | |||
|id=chr2:219472540..219472558,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002567;7.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,7.26e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;5.18e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.20e-12!115;UBERON:0000475!1.62e-08!365;UBERON:0000481!1.38e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;7.33e-41;2!UBERON:0002757;7.33e-41;2!UBERON:0010134;7.33e-41;2!UBERON:0005408;7.33e-41;2!UBERON:0001899;7.33e-41;2!UBERON:0003296;5.17e-21;4!UBERON:0010133;5.17e-21;4!UBERON:0002784;5.17e-21;4!UBERON:0000996;6.31e-21;1!UBERON:0001389;6.31e-21;1!UBERON:0000026;6.31e-21;1!UBERON:0008784;6.31e-21;1!UBERON:0006058;6.31e-21;1!UBERON:0003663;6.31e-21;1!UBERON:0004256;6.31e-21;1!UBERON:0004708;6.31e-21;1!UBERON:0002101;6.31e-21;1!UBERON:0004709;6.31e-21;1!UBERON:0002529;6.31e-21;1!UBERON:0010538;6.31e-21;1!UBERON:0003661;6.31e-21;1!UBERON:0010890;6.31e-21;1!UBERON:0002471;6.31e-21;1!UBERON:0001383;6.31e-21;1!UBERON:0010758;6.31e-21;1!UBERON:0010707;6.31e-21;1!UBERON:0000978;6.31e-21;1!UBERON:0002103;6.31e-21;1!UBERON:0001665;6.31e-21;1!UBERON:0003823;6.31e-21;1!UBERON:0000154;6.31e-21;1!UBERON:0010709;6.31e-21;1!UBERON:0001894;1.89e-12;7!UBERON:0005090;3.70e-11;2!UBERON:0001630;3.70e-11;2!UBERON:0000020;1.83e-08;23!UBERON:0001032;3.91e-08;24!UBERON:0004456;3.91e-08;24!UBERON:0001723;7.26e-08;3!UBERON:0001033;7.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.33e-41,2;UBERON:0002757,7.33e-41,2;UBERON:0010134,7.33e-41,2;UBERON:0005408,7.33e-41,2;UBERON:0001899,7.33e-41,2;UBERON:0005418,4.22e-21,1;UBERON:0001389,4.22e-21,1;UBERON:0000026,4.22e-21,1;UBERON:0008784,4.22e-21,1;UBERON:0006058,4.22e-21,1;UBERON:0003663,4.22e-21,1;UBERON:0004256,4.22e-21,1;UBERON:0004708,4.22e-21,1;UBERON:0002101,4.22e-21,1;UBERON:0004709,4.22e-21,1;UBERON:0002529,4.22e-21,1;UBERON:0010538,4.22e-21,1;UBERON:0003661,4.22e-21,1;UBERON:0010890,4.22e-21,1;UBERON:0002471,4.22e-21,1;UBERON:0001383,4.22e-21,1;UBERON:0004357,4.22e-21,1;UBERON:0004347,4.22e-21,1;UBERON:0005420,4.22e-21,1;UBERON:0005732,4.22e-21,1;UBERON:0010758,4.22e-21,1;UBERON:0010707,4.22e-21,1;UBERON:0000978,4.22e-21,1;UBERON:0002103,4.22e-21,1;UBERON:0001665,4.22e-21,1;UBERON:0003823,4.22e-21,1;UBERON:0000154,4.22e-21,1;UBERON:0010709,4.22e-21,1;UBERON:0005733,4.22e-21,1;UBERON:0005730,4.22e-21,1;UBERON:0000996,5.16e-21,1;UBERON:0003296,5.17e-21,4;UBERON:0010133,5.17e-21,4;UBERON:0002784,5.17e-21,4;UBERON:0001894,1.89e-12,7;UBERON:0006222,1.89e-12,7;UBERON:0005090,3.02e-11,2;UBERON:0001630,3.02e-11,2;UBERON:0000020,4.10e-08,24;UBERON:0001032,4.10e-08,24;UBERON:0004456,4.10e-08,24;UBERON:0001723,8.29e-08,3;UBERON:0001033,8.29e-08,3;UBERON:0010056,8.29e-08,3 | |||
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|short_description=p5@PLCD4 | |||
}} |
Revision as of 16:52, 12 September 2013
Short description: | p5@PLCD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_PLCD4_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -19bp_to_ENST00000483685_5end |
EntrezGene: | PLCD4 |
HGNC: | 9062 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 7.26e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.