FFCP PHASE1:Hg19::chr22:40322623..40322646,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9402|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4563|TSSclassifier=S|UniProt=B7Z8I3|association_with_transcript=0bp_to_ENST00000399090_5end|coexpression_cluster_id=C28|description=CAGE_peak_4_at_GRAP2_5end|id=chr22:40322623..40322646,+|ontology_enrichment_celltype=CL:0000791!3.73e-25!18;CL:0000789!3.73e-25!18;CL:0002420!3.73e-25!18;CL:0002419!3.73e-25!18;CL:0000790!3.73e-25!18;CL:0000084!2.50e-24!25;CL:0000827!2.50e-24!25;CL:0000625!9.11e-19!11;CL:0000838!1.31e-11!52;CL:0000542!2.91e-11!53;CL:0000051!2.91e-11!53;CL:0000738!2.72e-10!140;CL:0000624!7.68e-10!6;CL:0002274!2.90e-09!5;CL:0000457!2.90e-09!5;CL:0002191!2.90e-09!5;CL:0000097!2.90e-09!5;CL:0000831!2.90e-09!5;CL:0002028!2.90e-09!5;CL:0000037!5.20e-09!172;CL:0000566!5.20e-09!172;CL:0000988!7.26e-08!182;CL:0002031!2.20e-07!124;CL:0002032!2.20e-07!165;CL:0000837!2.20e-07!165|ontology_enrichment_celltype_v019=CL:0000084;4.86e-37;25!CL:0000791;7.71e-36;18!CL:0000789;7.71e-36;18!CL:0002419;7.71e-36;18!CL:0000625;7.33e-28;11!CL:0000097;1.43e-15;5!CL:0000624;4.24e-12;6!CL:0000226;1.52e-09;3!CL:0000842;1.52e-09;3!CL:0000163;1.69e-08;9!CL:0000542;8.06e-08;53|ontology_enrichment_celltype_v019_2=CL:0000084,4.20e-37,25;CL:0000827,4.20e-37,25;CL:0000791,6.58e-36,18;CL:0000789,6.58e-36,18;CL:0002420,6.58e-36,18;CL:0002419,6.58e-36,18;CL:0000790,6.58e-36,18;CL:0000625,5.54e-28,11;CL:0000097,9.45e-16,5;CL:0002028,9.45e-16,5;CL:0000838,2.32e-15,52;CL:0000542,5.52e-15,53;CL:0000051,5.52e-15,53;CL:0000624,4.62e-12,6;CL:0000738,1.01e-10,136;CL:0000226,2.19e-09,3;CL:0000842,2.19e-09,3;CL:0002031,6.95e-09,120;CL:0000163,1.36e-08,9;CL:0000037,3.40e-08,168;CL:0002087,1.63e-07,115;CL:0000988,1.91e-07,177|ontology_enrichment_development_v019=CL:0000790;7.71e-36;18!CL:0000051;8.06e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!2.19e-14!15;UBERON:0000179!2.19e-14!15;UBERON:0000463!2.19e-14!15;UBERON:0007023!3.37e-14!115|ontology_enrichment_uberon_v019=UBERON:0000178;3.43e-22;15!UBERON:0000179;3.43e-22;15!UBERON:0000463;3.43e-22;15!UBERON:0002390;3.86e-14;32!UBERON:0002193;3.27e-08;42!UBERON:0002370;3.78e-08;2!UBERON:0005058;3.78e-08;2!UBERON:0009113;3.78e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.84e-22,15;UBERON:0000179,2.84e-22,15;UBERON:0000463,2.84e-22,15;UBERON:0002390,2.14e-08,98;UBERON:0003061,2.14e-08,98;UBERON:0002370,3.95e-08,4;UBERON:0005058,3.95e-08,4;UBERON:0009113,3.95e-08,4;UBERON:0003295,3.95e-08,4;UBERON:0005562,3.95e-08,4;UBERON:0002193,4.79e-08,108;UBERON:0004177,1.64e-07,7;UBERON:0005057,1.64e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,0.401088894940283,0.217010870715852,0,0.647787332037959,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16380747125216,1.17903228824749,1.43921049299656,3.51091640320424,0.651844533267181,0.473447805734733,0,2.00538822393312,2.3568472597987,1.55073726208535,2.16643091012012,4.73937882984998,7.67350150603282,7.5641436117691,8.29050053357545,10.1431080007268,4.00373720537563,3.21048993707656,13.589618094647,1.58633079776593,1.91610246800961,1.03088233644789,2.02415753615602,7.00843911513013,5.20866763085135,9.50452044448374,3.46322773878877,7.29523683580185,9.99445812418767,3.55165878066025,1.64225599384209,2.62088766192152,0.802320587350522,3.76543450095277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06340959063441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95597942737566,5.28290604079356,2.69526550203004,2.59415916150531,2.27236380167484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10152039184331,1.50999940573032,1.06727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,2.84823593587081,3.33524485640905,2.87953591160336,1.94541993357815,2.16012574895246,3.96562588147135,0,0,0,0,0,16.6471913435289,8.76844500008523,0.399158742865633,0.383010740264733,0,0,0,0,0,0,2.03150133361924,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,1.65770349318689,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,32.7018554226357,0,0,0,0,0,0,0.317873157960757,0,0,0,0,0.995261931078505,0.530745387020035,0.6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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9402 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4563 | |||
|TSSclassifier=S | |||
|UniProt=B7Z8I3 | |||
|association_with_transcript=0bp_to_ENST00000399090_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_4_at_GRAP2_5end | |||
|id=chr22:40322623..40322646,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.73e-25!18;CL:0000789!3.73e-25!18;CL:0002420!3.73e-25!18;CL:0002419!3.73e-25!18;CL:0000790!3.73e-25!18;CL:0000084!2.50e-24!25;CL:0000827!2.50e-24!25;CL:0000625!9.11e-19!11;CL:0000838!1.31e-11!52;CL:0000542!2.91e-11!53;CL:0000051!2.91e-11!53;CL:0000738!2.72e-10!140;CL:0000624!7.68e-10!6;CL:0002274!2.90e-09!5;CL:0000457!2.90e-09!5;CL:0002191!2.90e-09!5;CL:0000097!2.90e-09!5;CL:0000831!2.90e-09!5;CL:0002028!2.90e-09!5;CL:0000037!5.20e-09!172;CL:0000566!5.20e-09!172;CL:0000988!7.26e-08!182;CL:0002031!2.20e-07!124;CL:0002032!2.20e-07!165;CL:0000837!2.20e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000084;4.86e-37;25!CL:0000791;7.71e-36;18!CL:0000789;7.71e-36;18!CL:0002419;7.71e-36;18!CL:0000625;7.33e-28;11!CL:0000097;1.43e-15;5!CL:0000624;4.24e-12;6!CL:0000226;1.52e-09;3!CL:0000842;1.52e-09;3!CL:0000163;1.69e-08;9!CL:0000542;8.06e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.20e-37,25;CL:0000827,4.20e-37,25;CL:0000791,6.58e-36,18;CL:0000789,6.58e-36,18;CL:0002420,6.58e-36,18;CL:0002419,6.58e-36,18;CL:0000790,6.58e-36,18;CL:0000625,5.54e-28,11;CL:0000097,9.45e-16,5;CL:0002028,9.45e-16,5;CL:0000838,2.32e-15,52;CL:0000542,5.52e-15,53;CL:0000051,5.52e-15,53;CL:0000624,4.62e-12,6;CL:0000738,1.01e-10,136;CL:0000226,2.19e-09,3;CL:0000842,2.19e-09,3;CL:0002031,6.95e-09,120;CL:0000163,1.36e-08,9;CL:0000037,3.40e-08,168;CL:0002087,1.63e-07,115;CL:0000988,1.91e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;7.71e-36;18!CL:0000051;8.06e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.19e-14!15;UBERON:0000179!2.19e-14!15;UBERON:0000463!2.19e-14!15;UBERON:0007023!3.37e-14!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.43e-22;15!UBERON:0000179;3.43e-22;15!UBERON:0000463;3.43e-22;15!UBERON:0002390;3.86e-14;32!UBERON:0002193;3.27e-08;42!UBERON:0002370;3.78e-08;2!UBERON:0005058;3.78e-08;2!UBERON:0009113;3.78e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.84e-22,15;UBERON:0000179,2.84e-22,15;UBERON:0000463,2.84e-22,15;UBERON:0002390,2.14e-08,98;UBERON:0003061,2.14e-08,98;UBERON:0002370,3.95e-08,4;UBERON:0005058,3.95e-08,4;UBERON:0009113,3.95e-08,4;UBERON:0003295,3.95e-08,4;UBERON:0005562,3.95e-08,4;UBERON:0002193,4.79e-08,108;UBERON:0004177,1.64e-07,7;UBERON:0005057,1.64e-07,7 | |||
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|short_description=p4@GRAP2 | |||
}} |
Revision as of 12:05, 12 September 2013
Short description: | p4@GRAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_GRAP2_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000399090_5end |
EntrezGene: | GRAP2 |
HGNC: | 4563 |
UniProt: | B7Z8I3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.20e-37 | 25 |
pro-T cell | 4.20e-37 | 25 |
mature alpha-beta T cell | 6.58e-36 | 18 |
alpha-beta T cell | 6.58e-36 | 18 |
immature T cell | 6.58e-36 | 18 |
mature T cell | 6.58e-36 | 18 |
immature alpha-beta T cell | 6.58e-36 | 18 |
CD8-positive, alpha-beta T cell | 5.54e-28 | 11 |
mast cell | 9.45e-16 | 5 |
basophil mast progenitor cell | 9.45e-16 | 5 |
lymphoid lineage restricted progenitor cell | 2.32e-15 | 52 |
lymphocyte | 5.52e-15 | 53 |
common lymphoid progenitor | 5.52e-15 | 53 |
CD4-positive, alpha-beta T cell | 4.62e-12 | 6 |
leukocyte | 1.01e-10 | 136 |
single nucleate cell | 2.19e-09 | 3 |
mononuclear cell | 2.19e-09 | 3 |
hematopoietic lineage restricted progenitor cell | 6.95e-09 | 120 |
endocrine cell | 1.36e-08 | 9 |
hematopoietic stem cell | 3.40e-08 | 168 |
nongranular leukocyte | 1.63e-07 | 115 |
hematopoietic cell | 1.91e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 2.84e-22 | 15 |
haemolymphatic fluid | 2.84e-22 | 15 |
organism substance | 2.84e-22 | 15 |
hematopoietic system | 2.14e-08 | 98 |
blood island | 2.14e-08 | 98 |
thymus | 3.95e-08 | 4 |
hemolymphoid system gland | 3.95e-08 | 4 |
thymic region | 3.95e-08 | 4 |
pharyngeal gland | 3.95e-08 | 4 |
thymus primordium | 3.95e-08 | 4 |
hemolymphoid system | 4.79e-08 | 108 |
hemopoietic organ | 1.64e-07 | 7 |
immune organ | 1.64e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.