FFCP PHASE1:Hg19::chr3:45245731..45245737,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:45245731..45245737,-|id=chr3:45245731..45245737,-|ontology_enrichment_celltype=CL:0000359!6.53e-18!32;CL:0000192!6.63e-14!42;CL:0000514!6.63e-14!42;CL:0000680!2.34e-13!57;CL:0000056!2.34e-13!57;CL:0000355!2.34e-13!57;CL:0000187!3.60e-13!54;CL:0000183!1.60e-11!59;CL:0000393!3.16e-11!60;CL:0000211!3.16e-11!60;CL:0002539!2.71e-10!10;CL:0000220!5.70e-10!246;CL:0002321!8.80e-10!248;CL:0002594!1.82e-09!4;CL:0000055!2.77e-08!180;CL:0000144!1.55e-07!625;CL:0002371!2.99e-07!591|ontology_enrichment_celltype_v019=CL:0000359;7.40e-32;32!CL:0002539;1.55e-22;10!CL:0002594;4.15e-21;4!CL:0000192;2.50e-18;43!CL:0000187;1.29e-10;55!CL:0000393;3.64e-08;61!CL:0000211;3.64e-08;61|ontology_enrichment_celltype_v019_2=CL:0000359,1.40e-32,32;CL:0000192,7.93e-24,43;CL:0000514,7.93e-24,43;CL:0002539,7.35e-23,10;CL:0002594,9.78e-21,4;CL:0000187,2.91e-18,55;CL:0000680,3.14e-17,58;CL:0000056,3.14e-17,58;CL:0000355,3.14e-17,58;CL:0000393,2.68e-16,61;CL:0000211,2.68e-16,61;CL:0000222,2.33e-07,121|ontology_enrichment_development_v019=CL:0000514;2.50e-18;43!CL:0000355;1.98e-09;58|ontology_enrichment_disease=DOID:2394!2.05e-13!14;DOID:120!4.68e-07!27|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!3.54e-14!83;UBERON:0002329!3.54e-14!83;UBERON:0003077!3.54e-14!83;UBERON:0003059!3.54e-14!83;UBERON:0007282!3.54e-14!83;UBERON:0009618!3.54e-14!83;UBERON:0007285!3.54e-14!83;UBERON:0001637!4.36e-14!42;UBERON:0003509!4.36e-14!42;UBERON:0004572!4.36e-14!42;UBERON:0000486!2.71e-13!82;UBERON:0004290!3.99e-13!70;UBERON:0001134!4.73e-12!61;UBERON:0002036!4.73e-12!61;UBERON:0003082!4.73e-12!61;UBERON:0002385!1.83e-11!63;UBERON:0001015!1.83e-11!63;UBERON:0000383!1.83e-11!63;UBERON:0004573!1.94e-11!33;UBERON:0004571!1.94e-11!33;UBERON:0002118!5.20e-11!5;UBERON:0004532!5.20e-11!5;UBERON:0004237!2.71e-10!10;UBERON:0004695!2.71e-10!10;UBERON:0002111!2.71e-10!10;UBERON:0004178!2.71e-10!10;UBERON:0001310!1.82e-09!4;UBERON:0000992!2.38e-09!13;UBERON:0001981!3.07e-09!60;UBERON:0007500!3.07e-09!60;UBERON:0004537!3.07e-09!60;UBERON:0006965!3.07e-09!60;UBERON:0000055!2.63e-08!69;UBERON:0001135!3.30e-08!15;UBERON:0002049!4.60e-08!79;UBERON:0007798!4.60e-08!79;UBERON:0005256!7.45e-08!143;UBERON:0002204!2.02e-07!167;UBERON:0004872!2.63e-07!84|ontology_enrichment_uberon_v019=UBERON:0004237;1.55e-22;10!UBERON:0004695;1.55e-22;10!UBERON:0002111;1.55e-22;10!UBERON:0004178;1.55e-22;10!UBERON:0001310;4.15e-21;4!UBERON:0004573;3.37e-20;33!UBERON:0004571;3.37e-20;33!UBERON:0001637;7.39e-19;42!UBERON:0003509;7.39e-19;42!UBERON:0004572;7.39e-19;42!UBERON:0002118;8.87e-17;5!UBERON:0000947;3.13e-15;21!UBERON:0010191;3.13e-15;21!UBERON:0001135;5.24e-15;15!UBERON:0007500;3.12e-12;56!UBERON:0001981;3.12e-12;56!UBERON:0004537;3.12e-12;56!UBERON:0010260;1.06e-09;9!UBERON:0003914;3.55e-09;74!UBERON:0000055;3.61e-09;65!UBERON:0002385;5.98e-07;31!UBERON:0001015;5.98e-07;31!UBERON:0000383;5.98e-07;31!UBERON:0002049;8.94e-07;75!UBERON:0007798;8.94e-07;75!UBERON:0000992;8.97e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.79e-29,42;UBERON:0003509,2.79e-29,42;UBERON:0004572,2.79e-29,42;UBERON:0004237,7.35e-23,10;UBERON:0004695,7.35e-23,10;UBERON:0002111,7.35e-23,10;UBERON:0004178,7.35e-23,10;UBERON:0004573,2.79e-21,33;UBERON:0004571,2.79e-21,33;UBERON:0001310,9.78e-21,4;UBERON:0007500,2.65e-20,59;UBERON:0001981,2.65e-20,59;UBERON:0004537,2.65e-20,59;UBERON:0006965,2.65e-20,59;UBERON:0000055,2.31e-17,68;UBERON:0002118,6.60e-17,5;UBERON:0002329,1.49e-16,71;UBERON:0003059,1.49e-16,71;UBERON:0007282,1.49e-16,71;UBERON:0004290,1.49e-16,71;UBERON:0009618,1.49e-16,71;UBERON:0004872,2.23e-16,83;UBERON:0003077,2.69e-16,72;UBERON:0007285,2.69e-16,72;UBERON:0007524,4.77e-16,73;UBERON:0001134,5.23e-16,62;UBERON:0002036,5.23e-16,62;UBERON:0003082,5.23e-16,62;UBERON:0002385,1.87e-15,64;UBERON:0001015,1.87e-15,64;UBERON:0000383,1.87e-15,64;UBERON:0000947,2.07e-15,21;UBERON:0010191,2.07e-15,21;UBERON:0001135,3.22e-15,15;UBERON:0007503,6.78e-15,78;UBERON:0002049,6.87e-15,78;UBERON:0007798,6.87e-15,78;UBERON:0000486,7.01e-14,83;UBERON:0004535,5.83e-12,109;UBERON:0001009,1.39e-11,112;UBERON:0003914,5.39e-11,117;UBERON:0003081,4.73e-10,203;UBERON:0002204,1.29e-09,167;UBERON:0000926,1.46e-09,315;UBERON:0004120,1.46e-09,315;UBERON:0006603,1.46e-09,315;UBERON:0010260,1.54e-09,9;UBERON:0005256,8.09e-09,122;UBERON:0000490,2.82e-08,148;UBERON:0000025,6.55e-07,192;UBERON:0000992,8.03e-07,13|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,1.46062018077475,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0.612167784741805,0,1.27867425159808,0,0,0,1.45104619314292,1.13477044938228,1.24564449799115,0,0.521482918420201,0,0,0.736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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:45245731..45245737,- | |||
|id=chr3:45245731..45245737,- | |||
|ontology_enrichment_celltype=CL:0000359!6.53e-18!32;CL:0000192!6.63e-14!42;CL:0000514!6.63e-14!42;CL:0000680!2.34e-13!57;CL:0000056!2.34e-13!57;CL:0000355!2.34e-13!57;CL:0000187!3.60e-13!54;CL:0000183!1.60e-11!59;CL:0000393!3.16e-11!60;CL:0000211!3.16e-11!60;CL:0002539!2.71e-10!10;CL:0000220!5.70e-10!246;CL:0002321!8.80e-10!248;CL:0002594!1.82e-09!4;CL:0000055!2.77e-08!180;CL:0000144!1.55e-07!625;CL:0002371!2.99e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.40e-32;32!CL:0002539;1.55e-22;10!CL:0002594;4.15e-21;4!CL:0000192;2.50e-18;43!CL:0000187;1.29e-10;55!CL:0000393;3.64e-08;61!CL:0000211;3.64e-08;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.40e-32,32;CL:0000192,7.93e-24,43;CL:0000514,7.93e-24,43;CL:0002539,7.35e-23,10;CL:0002594,9.78e-21,4;CL:0000187,2.91e-18,55;CL:0000680,3.14e-17,58;CL:0000056,3.14e-17,58;CL:0000355,3.14e-17,58;CL:0000393,2.68e-16,61;CL:0000211,2.68e-16,61;CL:0000222,2.33e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;2.50e-18;43!CL:0000355;1.98e-09;58 | |||
|ontology_enrichment_disease=DOID:2394!2.05e-13!14;DOID:120!4.68e-07!27 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.54e-14!83;UBERON:0002329!3.54e-14!83;UBERON:0003077!3.54e-14!83;UBERON:0003059!3.54e-14!83;UBERON:0007282!3.54e-14!83;UBERON:0009618!3.54e-14!83;UBERON:0007285!3.54e-14!83;UBERON:0001637!4.36e-14!42;UBERON:0003509!4.36e-14!42;UBERON:0004572!4.36e-14!42;UBERON:0000486!2.71e-13!82;UBERON:0004290!3.99e-13!70;UBERON:0001134!4.73e-12!61;UBERON:0002036!4.73e-12!61;UBERON:0003082!4.73e-12!61;UBERON:0002385!1.83e-11!63;UBERON:0001015!1.83e-11!63;UBERON:0000383!1.83e-11!63;UBERON:0004573!1.94e-11!33;UBERON:0004571!1.94e-11!33;UBERON:0002118!5.20e-11!5;UBERON:0004532!5.20e-11!5;UBERON:0004237!2.71e-10!10;UBERON:0004695!2.71e-10!10;UBERON:0002111!2.71e-10!10;UBERON:0004178!2.71e-10!10;UBERON:0001310!1.82e-09!4;UBERON:0000992!2.38e-09!13;UBERON:0001981!3.07e-09!60;UBERON:0007500!3.07e-09!60;UBERON:0004537!3.07e-09!60;UBERON:0006965!3.07e-09!60;UBERON:0000055!2.63e-08!69;UBERON:0001135!3.30e-08!15;UBERON:0002049!4.60e-08!79;UBERON:0007798!4.60e-08!79;UBERON:0005256!7.45e-08!143;UBERON:0002204!2.02e-07!167;UBERON:0004872!2.63e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;1.55e-22;10!UBERON:0004695;1.55e-22;10!UBERON:0002111;1.55e-22;10!UBERON:0004178;1.55e-22;10!UBERON:0001310;4.15e-21;4!UBERON:0004573;3.37e-20;33!UBERON:0004571;3.37e-20;33!UBERON:0001637;7.39e-19;42!UBERON:0003509;7.39e-19;42!UBERON:0004572;7.39e-19;42!UBERON:0002118;8.87e-17;5!UBERON:0000947;3.13e-15;21!UBERON:0010191;3.13e-15;21!UBERON:0001135;5.24e-15;15!UBERON:0007500;3.12e-12;56!UBERON:0001981;3.12e-12;56!UBERON:0004537;3.12e-12;56!UBERON:0010260;1.06e-09;9!UBERON:0003914;3.55e-09;74!UBERON:0000055;3.61e-09;65!UBERON:0002385;5.98e-07;31!UBERON:0001015;5.98e-07;31!UBERON:0000383;5.98e-07;31!UBERON:0002049;8.94e-07;75!UBERON:0007798;8.94e-07;75!UBERON:0000992;8.97e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.79e-29,42;UBERON:0003509,2.79e-29,42;UBERON:0004572,2.79e-29,42;UBERON:0004237,7.35e-23,10;UBERON:0004695,7.35e-23,10;UBERON:0002111,7.35e-23,10;UBERON:0004178,7.35e-23,10;UBERON:0004573,2.79e-21,33;UBERON:0004571,2.79e-21,33;UBERON:0001310,9.78e-21,4;UBERON:0007500,2.65e-20,59;UBERON:0001981,2.65e-20,59;UBERON:0004537,2.65e-20,59;UBERON:0006965,2.65e-20,59;UBERON:0000055,2.31e-17,68;UBERON:0002118,6.60e-17,5;UBERON:0002329,1.49e-16,71;UBERON:0003059,1.49e-16,71;UBERON:0007282,1.49e-16,71;UBERON:0004290,1.49e-16,71;UBERON:0009618,1.49e-16,71;UBERON:0004872,2.23e-16,83;UBERON:0003077,2.69e-16,72;UBERON:0007285,2.69e-16,72;UBERON:0007524,4.77e-16,73;UBERON:0001134,5.23e-16,62;UBERON:0002036,5.23e-16,62;UBERON:0003082,5.23e-16,62;UBERON:0002385,1.87e-15,64;UBERON:0001015,1.87e-15,64;UBERON:0000383,1.87e-15,64;UBERON:0000947,2.07e-15,21;UBERON:0010191,2.07e-15,21;UBERON:0001135,3.22e-15,15;UBERON:0007503,6.78e-15,78;UBERON:0002049,6.87e-15,78;UBERON:0007798,6.87e-15,78;UBERON:0000486,7.01e-14,83;UBERON:0004535,5.83e-12,109;UBERON:0001009,1.39e-11,112;UBERON:0003914,5.39e-11,117;UBERON:0003081,4.73e-10,203;UBERON:0002204,1.29e-09,167;UBERON:0000926,1.46e-09,315;UBERON:0004120,1.46e-09,315;UBERON:0006603,1.46e-09,315;UBERON:0010260,1.54e-09,9;UBERON:0005256,8.09e-09,122;UBERON:0000490,2.82e-08,148;UBERON:0000025,6.55e-07,192;UBERON:0000992,8.03e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,1.46062018077475,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0.612167784741805,0,1.27867425159808,0,0,0,1.45104619314292,1.13477044938228,1.24564449799115,0,0.521482918420201,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57504788195691,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0.247266929278557,0.910161361938026,0,0,0,0,0,0.30648779579902,0.300476117813194,0,0.179389635688862,0,0,0,0.412210116953756,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0.386521706326594,0.545492241181669,0,0,0,0,0,0,0,4.69348596989448,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.370353780634118,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,0,0.283550194484773,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.602878754119172,0,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.193341436584244,0.308097234229289,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0,0,1.3940745403212,1.54016790088044,0.532306030317022,2.60979897622522,2.03856641014312,0.286249773483982,0,0,0,0,0,0.636406495851874,2.35484592059769,0.359744915166629,0,0,0,0,0,0,0.974853958525138,1.05650146756755,0,0,0,0,0.66343897524122,0,0,0,2.23201414658974,0.92947049429925,1.12678241012897,0,0,1.07001315444375,0,0,0,0,0,0.384888450902048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569710279235006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.596143835108969,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0,1.14420034198462,0,0.15543720058278,0.295710299979268,0.477890301491107,0.899606224327209,0.465788870628778,0,0,0.521745061811734,0.601030435988874,0,1.62748293281865,1.27294061441792,0.429642228169954,1.39210127963548,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0.226705925512272,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473328002922261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:45245731..45245737,- | |||
}} |
Revision as of 00:15, 13 September 2013
Short description: | p@chr3:45245731..45245737, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:45245731..45245737, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.40e-32 | 32 |
smooth muscle cell | 7.93e-24 | 43 |
smooth muscle myoblast | 7.93e-24 | 43 |
aortic smooth muscle cell | 7.35e-23 | 10 |
smooth muscle cell of the umbilical artery | 9.78e-21 | 4 |
muscle cell | 2.91e-18 | 55 |
muscle precursor cell | 3.14e-17 | 58 |
myoblast | 3.14e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.14e-17 | 58 |
electrically responsive cell | 2.68e-16 | 61 |
electrically active cell | 2.68e-16 | 61 |
mesodermal cell | 2.33e-07 | 121 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.