FFCP PHASE1:Hg19::chr7:116312581..116312589,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4233|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7029|TSSclassifier=S|UniProt=A1L467,P08581|association_with_transcript=122bp_to_ENST00000318493,NM_000245,NM_001127500,uc003vii.1,uc003vij.2,uc010lkg.2,uc010lkh.2_5end|coexpression_cluster_id=C2838|description=CAGE_peak_12_at_MET_5end|id=chr7:116312581..116312589,+|ontology_enrichment_celltype=CL:0000066!1.02e-13!254|ontology_enrichment_celltype_v019=CL:0000148;6.63e-07;10|ontology_enrichment_celltype_v019_2=CL:0000148,4.95e-07,10;CL:0000541,4.95e-07,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!4.87e-08!106;DOID:0050687!1.10e-07!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001893!1.25e-11!34;UBERON:0002020!3.91e-11!34;UBERON:0003528!3.91e-11!34;UBERON:0002791!5.17e-11!33;UBERON:0002780!7.79e-11!41;UBERON:0001890!7.79e-11!41;UBERON:0006240!7.79e-11!41;UBERON:0001869!1.78e-10!32;UBERON:0003080!2.54e-10!42;UBERON:0000956!1.61e-09!25;UBERON:0000203!1.61e-09!25;UBERON:0004121!7.20e-09!169;UBERON:0002619!9.71e-09!22;UBERON:0001049!1.52e-08!57;UBERON:0005068!1.52e-08!57;UBERON:0006241!1.52e-08!57;UBERON:0007135!1.52e-08!57;UBERON:0000924!1.72e-08!173;UBERON:0006601!1.72e-08!173;UBERON:0003056!1.80e-08!61;UBERON:0000483!3.60e-08!309;UBERON:0003075!5.93e-08!86;UBERON:0007284!5.93e-08!86;UBERON:0000064!8.41e-08!219;UBERON:0000119!8.79e-08!312;UBERON:0001950!1.02e-07!20;UBERON:0000062!1.37e-07!511;UBERON:0000033!1.61e-07!123;UBERON:0002346!2.13e-07!90;UBERON:0002616!2.71e-07!59;UBERON:0000153!4.22e-07!129;UBERON:0007811!4.22e-07!129;UBERON:0000955!5.44e-07!69;UBERON:0006238!5.44e-07!69;UBERON:0000475!6.77e-07!365;UBERON:0000467!7.05e-07!625;UBERON:0000480!8.94e-07!626;UBERON:0000073!9.12e-07!94;UBERON:0001016!9.12e-07!94|ontology_enrichment_uberon_v019=UBERON:0002619;2.49e-21;22!UBERON:0001950;2.04e-19;20!UBERON:0000956;1.35e-18;25!UBERON:0000203;1.35e-18;25!UBERON:0002021;9.93e-15;5!UBERON:0001869;1.28e-13;32!UBERON:0001893;4.27e-13;34!UBERON:0002791;1.40e-12;32!UBERON:0003528;7.71e-12;34!UBERON:0002020;7.71e-12;34!UBERON:0001872;1.88e-08;5!UBERON:0002780;1.02e-07;41!UBERON:0001890;1.02e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.76e-21,22;UBERON:0001950,3.23e-19,20;UBERON:0000956,1.94e-18,25;UBERON:0000203,1.94e-18,25;UBERON:0002021,1.47e-14,5;UBERON:0002791,4.98e-14,32;UBERON:0001869,4.98e-14,32;UBERON:0003528,4.28e-13,34;UBERON:0002020,4.28e-13,34;UBERON:0001893,4.28e-13,34;UBERON:0002780,1.57e-10,41;UBERON:0001890,1.57e-10,41;UBERON:0003080,1.57e-10,41;UBERON:0006240,1.57e-10,41;UBERON:0001872,2.31e-08,5;UBERON:0003056,9.83e-08,61;UBERON:0000073,1.07e-07,53;UBERON:0002616,1.07e-07,53;UBERON:0001049,3.54e-07,56;UBERON:0005068,3.54e-07,56;UBERON:0006241,3.54e-07,56;UBERON:0007135,3.54e-07,56|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0.290209238628584,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,0.289693037921647,0,0,0.0945348171640679,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0,0.367663080345869,0,0.17859945656816,0.44905874525234,0.337834441449967,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.860509862246441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0.30648779579902,0,0.113432183160021,0.538168907066586,0.427114777637135,0,1.50045548042201,0.309157587715317,0.515281080091258,0,0.675105328965065,0.292311015483596,0.504867548488229,0.368199594569197,0.323292113637624,0.355009592516614,0.503760491138201,0.169560592310488,0.193260853163297,0.545492241181669,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,0.337169380156203,0.964044119533928,0.661763836394364,0.871517776369625,0.474541238222193,0.269662616320329,0.392442930250692,0,0,0,0,0,1.26755034821831,0,0,0,0.122988438543114,0.171567810298526,0.439001141634502,0,0.201057944823262,0.277765335475589,0,0,0,0.34779121492523,0.939269553886573,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0.335964256397719,0,0.53735113621709,0.290633938513962,0.383382679165211,0,0,0,0,0,1.58744735730423,0.381988425558278,1.17217447210047,0,0.205654985406647,1.50171528921959,2.5724378936752,0,0,0,0,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,1.42636905040718,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0.207970861530807,0.535286966391485,0.315404830067869,0.117141414992713,0,0,1.03473071292505,0,0,0.260650843404249,0,0,0,0.215714200818617,0,0.303127571446259,1.6643543951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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4233 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7029 | |||
|TSSclassifier=S | |||
|UniProt=A1L467,P08581 | |||
|association_with_transcript=122bp_to_ENST00000318493,NM_000245,NM_001127500,uc003vii.1,uc003vij.2,uc010lkg.2,uc010lkh.2_5end | |||
|coexpression_cluster_id=C2838 | |||
|description=CAGE_peak_12_at_MET_5end | |||
|id=chr7:116312581..116312589,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.02e-13!254 | |||
|ontology_enrichment_celltype_v019=CL:0000148;6.63e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,4.95e-07,10;CL:0000541,4.95e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.87e-08!106;DOID:0050687!1.10e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!1.25e-11!34;UBERON:0002020!3.91e-11!34;UBERON:0003528!3.91e-11!34;UBERON:0002791!5.17e-11!33;UBERON:0002780!7.79e-11!41;UBERON:0001890!7.79e-11!41;UBERON:0006240!7.79e-11!41;UBERON:0001869!1.78e-10!32;UBERON:0003080!2.54e-10!42;UBERON:0000956!1.61e-09!25;UBERON:0000203!1.61e-09!25;UBERON:0004121!7.20e-09!169;UBERON:0002619!9.71e-09!22;UBERON:0001049!1.52e-08!57;UBERON:0005068!1.52e-08!57;UBERON:0006241!1.52e-08!57;UBERON:0007135!1.52e-08!57;UBERON:0000924!1.72e-08!173;UBERON:0006601!1.72e-08!173;UBERON:0003056!1.80e-08!61;UBERON:0000483!3.60e-08!309;UBERON:0003075!5.93e-08!86;UBERON:0007284!5.93e-08!86;UBERON:0000064!8.41e-08!219;UBERON:0000119!8.79e-08!312;UBERON:0001950!1.02e-07!20;UBERON:0000062!1.37e-07!511;UBERON:0000033!1.61e-07!123;UBERON:0002346!2.13e-07!90;UBERON:0002616!2.71e-07!59;UBERON:0000153!4.22e-07!129;UBERON:0007811!4.22e-07!129;UBERON:0000955!5.44e-07!69;UBERON:0006238!5.44e-07!69;UBERON:0000475!6.77e-07!365;UBERON:0000467!7.05e-07!625;UBERON:0000480!8.94e-07!626;UBERON:0000073!9.12e-07!94;UBERON:0001016!9.12e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.49e-21;22!UBERON:0001950;2.04e-19;20!UBERON:0000956;1.35e-18;25!UBERON:0000203;1.35e-18;25!UBERON:0002021;9.93e-15;5!UBERON:0001869;1.28e-13;32!UBERON:0001893;4.27e-13;34!UBERON:0002791;1.40e-12;32!UBERON:0003528;7.71e-12;34!UBERON:0002020;7.71e-12;34!UBERON:0001872;1.88e-08;5!UBERON:0002780;1.02e-07;41!UBERON:0001890;1.02e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.76e-21,22;UBERON:0001950,3.23e-19,20;UBERON:0000956,1.94e-18,25;UBERON:0000203,1.94e-18,25;UBERON:0002021,1.47e-14,5;UBERON:0002791,4.98e-14,32;UBERON:0001869,4.98e-14,32;UBERON:0003528,4.28e-13,34;UBERON:0002020,4.28e-13,34;UBERON:0001893,4.28e-13,34;UBERON:0002780,1.57e-10,41;UBERON:0001890,1.57e-10,41;UBERON:0003080,1.57e-10,41;UBERON:0006240,1.57e-10,41;UBERON:0001872,2.31e-08,5;UBERON:0003056,9.83e-08,61;UBERON:0000073,1.07e-07,53;UBERON:0002616,1.07e-07,53;UBERON:0001049,3.54e-07,56;UBERON:0005068,3.54e-07,56;UBERON:0006241,3.54e-07,56;UBERON:0007135,3.54e-07,56 | |||
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| |||
|short_description=p12@MET | |||
}} |
Revision as of 22:52, 13 September 2013
Short description: | p12@MET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_MET_5end |
Coexpression cluster: | C2838_occipital_medial_squamous_gastric_parietal_frontal_Melanocyte |
Association with transcript: | 122bp_to_ENST00000318493, NM_000245, NM_001127500, uc003vii.1, uc003vij.2, uc010lkg.2, uc010lkh.2_5end |
EntrezGene: | MET |
HGNC: | 7029 |
UniProt: | A1L467P08581 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 4.95e-07 | 10 |
melanoblast | 4.95e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 3.76e-21 | 22 |
neocortex | 3.23e-19 | 20 |
cerebral cortex | 1.94e-18 | 25 |
pallium | 1.94e-18 | 25 |
occipital lobe | 1.47e-14 | 5 |
regional part of telencephalon | 4.98e-14 | 32 |
cerebral hemisphere | 4.98e-14 | 32 |
brain grey matter | 4.28e-13 | 34 |
gray matter | 4.28e-13 | 34 |
telencephalon | 4.28e-13 | 34 |
regional part of forebrain | 1.57e-10 | 41 |
forebrain | 1.57e-10 | 41 |
anterior neural tube | 1.57e-10 | 41 |
future forebrain | 1.57e-10 | 41 |
parietal lobe | 2.31e-08 | 5 |
pre-chordal neural plate | 9.83e-08 | 61 |
regional part of nervous system | 1.07e-07 | 53 |
regional part of brain | 1.07e-07 | 53 |
neural tube | 3.54e-07 | 56 |
neural rod | 3.54e-07 | 56 |
future spinal cord | 3.54e-07 | 56 |
neural keel | 3.54e-07 | 56 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.