FFCP PHASE1:Hg19::chr12:6485336..6485354,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6337 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-142bp_to_ENST00000536411_5end | |||
|coexpression_cluster_id=C2229 | |||
|description=CAGE_peak_4_at_SCNN1A_5end | |||
|id=chr12:6485336..6485354,- | |||
|ontology_enrichment_celltype=CL:0000066!1.90e-34!254;CL:0002076!1.76e-19!43;CL:0000223!1.84e-18!59;CL:0002368!7.91e-11!13;CL:0002202!1.04e-07!9;CL:0002632!1.04e-07!9;CL:0002251!1.18e-07!21;CL:1000507!6.18e-07!12;CL:1000494!6.18e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.10e-13;13!CL:1000507;2.95e-13;10!CL:1000494;2.95e-13;10!CL:0002076;1.82e-12;42!CL:1000449;3.36e-10;15!CL:1000497;1.06e-08;17!CL:0002518;1.06e-08;17!CL:0002202;2.36e-08;9!CL:0002632;2.36e-08;9!CL:0000349;1.07e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.44e-26,253;CL:0002076,1.21e-17,42;CL:0000223,1.23e-17,58;CL:0002368,1.54e-13,13;CL:1000507,3.77e-13,10;CL:1000494,3.77e-13,10;CL:1000449,4.06e-10,15;CL:1000497,1.25e-08,17;CL:0002518,1.25e-08,17;CL:0002202,2.71e-08,9;CL:0002632,2.71e-08,9;CL:0000349,9.41e-08,19 | |||
|ontology_enrichment_development_v019=CL:0000223;1.67e-09;58 | |||
|ontology_enrichment_disease=DOID:305!1.09e-21!106;DOID:0050687!2.26e-12!143;DOID:1749!4.29e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.42e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.56e-12,106;DOID:0050687,7.11e-08,143;DOID:1749,2.45e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.62e-22!169;UBERON:0000925!4.62e-22!169;UBERON:0006595!4.62e-22!169;UBERON:0000077!3.38e-18!130;UBERON:0005177!2.97e-16!107;UBERON:0000466!4.73e-16!126;UBERON:0001007!5.39e-16!155;UBERON:0001555!5.39e-16!155;UBERON:0007026!5.39e-16!155;UBERON:0000464!3.27e-15!104;UBERON:0000481!3.44e-15!347;UBERON:0001004!1.56e-14!72;UBERON:0004921!2.05e-14!129;UBERON:0004185!2.05e-14!129;UBERON:0001041!2.96e-14!98;UBERON:0000065!5.82e-14!53;UBERON:0008947!1.67e-12!38;UBERON:0003258!1.67e-12!38;UBERON:0003104!1.80e-12!238;UBERON:0009142!1.80e-12!238;UBERON:0001048!5.68e-12!168;UBERON:0005911!8.65e-12!82;UBERON:0000922!1.93e-11!612;UBERON:0006554!8.33e-11!44;UBERON:0000063!1.10e-10!97;UBERON:0001008!2.48e-10!45;UBERON:0000062!3.60e-10!511;UBERON:0005178!7.15e-10!34;UBERON:0002224!7.15e-10!34;UBERON:0005153!1.10e-09!37;UBERON:0000072!1.12e-09!46;UBERON:0005181!2.40e-09!35;UBERON:0002050!3.00e-09!605;UBERON:0005423!3.00e-09!605;UBERON:0009569!3.91e-09!113;UBERON:0000058!5.19e-09!26;UBERON:0000923!6.81e-09!604;UBERON:0005291!6.81e-09!604;UBERON:0006598!6.81e-09!604;UBERON:0002532!6.81e-09!604;UBERON:0000064!1.32e-08!219;UBERON:0000468!1.60e-08!659;UBERON:0005157!3.36e-08!51;UBERON:0000489!5.44e-08!32;UBERON:0002113!8.72e-08!27;UBERON:0003918!8.72e-08!27;UBERON:0005095!8.72e-08!27;UBERON:0007687!8.72e-08!27;UBERON:0002048!2.16e-07!22;UBERON:0000117!2.16e-07!22;UBERON:0000171!2.16e-07!22;UBERON:0000170!2.16e-07!22;UBERON:0005597!2.16e-07!22;UBERON:0000118!2.16e-07!22;UBERON:0000475!2.45e-07!365;UBERON:0002553!3.02e-07!70;UBERON:0007196!3.14e-07!14;UBERON:0001558!3.14e-07!14;UBERON:0000080!5.36e-07!18;UBERON:0002120!5.36e-07!18;UBERON:0004875!5.36e-07!18;UBERON:0005721!5.36e-07!18;UBERON:0005754!5.36e-07!18;UBERON:0007297!5.36e-07!18;UBERON:0009773!6.18e-07!12;UBERON:0001231!6.18e-07!12;UBERON:0004810!6.18e-07!12;UBERON:0000970!7.51e-07!20;UBERON:0002100!7.86e-07!216;UBERON:0005631!9.54e-07!14;UBERON:0000158!9.54e-07!14;UBERON:0003064!9.85e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.95e-13;10!UBERON:0009773;2.95e-13;10!UBERON:0001231;2.95e-13;10!UBERON:0004810;2.95e-13;10!UBERON:0006554;2.15e-12;30!UBERON:0001008;2.15e-12;30!UBERON:0002113;3.66e-11;24!UBERON:0011143;3.66e-11;24!UBERON:0006555;3.36e-10;15!UBERON:0004819;3.36e-10;15!UBERON:0001285;3.36e-10;15!UBERON:0007684;3.36e-10;15!UBERON:0000489;6.55e-10;29!UBERON:0003101;7.46e-10;22!UBERON:0000079;7.46e-10;22!UBERON:0003135;5.55e-07;11!UBERON:0005178;8.21e-07;34!UBERON:0002224;8.21e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,9.19e-21,47;UBERON:0001008,3.83e-20,48;UBERON:0005177,1.38e-14,101;UBERON:0002113,1.89e-13,26;UBERON:0003918,1.89e-13,26;UBERON:0011143,1.89e-13,26;UBERON:0005095,1.89e-13,26;UBERON:0007687,1.89e-13,26;UBERON:0004810,3.77e-13,10;UBERON:0005153,3.59e-12,37;UBERON:0000489,5.31e-12,31;UBERON:0006555,2.38e-11,16;UBERON:0004819,2.38e-11,16;UBERON:0004119,9.56e-11,160;UBERON:0000925,9.56e-11,160;UBERON:0006595,9.56e-11,160;UBERON:0004211,4.06e-10,15;UBERON:0009773,4.06e-10,15;UBERON:0001231,4.06e-10,15;UBERON:0001285,4.06e-10,15;UBERON:0007684,4.06e-10,15;UBERON:0004208,4.06e-10,15;UBERON:0003101,9.50e-10,22;UBERON:0000079,9.50e-10,22;UBERON:0009569,1.07e-09,112;UBERON:0005157,2.10e-09,47;UBERON:0005911,8.64e-09,82;UBERON:0005156,1.35e-08,59;UBERON:0000990,1.35e-08,59;UBERON:0004921,2.82e-08,118;UBERON:0005172,4.46e-08,54;UBERON:0005173,4.46e-08,54;UBERON:0000065,1.13e-07,54;UBERON:0005631,1.93e-07,14;UBERON:0000158,1.93e-07,14;UBERON:0005178,3.63e-07,34;UBERON:0002224,3.63e-07,34;UBERON:0003135,5.36e-07,11;UBERON:0005181,7.39e-07,35;UBERON:0001004,7.92e-07,74;UBERON:0001007,8.71e-07,145;UBERON:0001555,8.71e-07,145;UBERON:0007026,8.71e-07,145;UBERON:0002417,9.78e-07,60;UBERON:0000916,9.78e-07,60 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0.872338524100369,0,0,0,4.66894479352867,10.4670175195864,24.2469923064491,45.1041532770656,0.495065411840187,1.32558950291166,0,0,0,0,0.492484232307152,0.408001382488506,0.313454721478088,0,2.6006140763848,0.125542639594803,0,0,0,0,0,0,0.919421224478927,3.0120591877825,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,1.51255707462509,1.77383517970051,3.07421749925941,1.11332214173056,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0.622422070799533,0,0,0.756787138224657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.573609190778008,1.46368447355514,1.32529768321485,1.97529702878181,0.725627385107593,2.27088765788066,0.36497735907583,0,0,0,0,0,0.709840800239063,0.842923450390509,0.964044119533928,0.661763836394364,0.653638332277218,0.237270619111097,0.808987848960987,0.392442930250692,1.15424147083917,0,0,0.8231480226628,0,0,0,0,0,4.05861847192275,3.43135620597051,0.219500570817251,0,0.100528972411631,0.833296006426766,0.325808305310325,0,0,0.34779121492523,0.821860859650752,0,0,0,0,0,0,0,0,0.93733833986777,0.335964256397719,0.425325291727159,5.3735113621709,3.48760726216754,13.4183937707824,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0.43596006883328,0.22001485746285,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0.428933980974443,9.76718889704597,1.64648067356154,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0.61642896765115,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.96306386750624,3.00102312635806,0.542530047399471,0,0,0,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0.343143423810856,0,0,0,6.36567900037145,19.9722527412596,26.9127361063415,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,6.28469137876436,3.80962293576241,3.03867263488458,0,0,0,3.15839729035188,0.0770153371044148,7.84349769176855,5.84556898613043,1.05551628892876,0,0,0,0,9.212178876491,7.5253466078228,10.7048034678916,5.81753206250107,6.26849313222099,0,0,0.512900250232778,2.95213181129735,1.30151357865721,1.33953315142039,0,0,0,0,0,0,0.308097234229289,0.460511024178389,0,0,0.290033387828457,0.0852266274161009,0,1.98341898433174,7.30322255987403,15.4411382118447,1.8208400553999,0,0,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0.767693373934002,0,0,0,0,0,0.235624804691373,0,0,0,1.95053495635836,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.294747123039363,0,0,0,0,0,0.699869440489966,0.577332676353072,9.38423185750102,4.3556393944529,1.31801321087491,3.01353760869861,0,2.66058092122005,0.918893600827838,0,0,0,0,0,0,0,0,0.854592569019785,7.69983884210687,1.47024129588619,0,0,0,0,0,0,0.211673582723883,0,0,0,0,2.50634477090067,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0.561421621224659,0,0,0,1.13654458722565,3.10367830158997,0.296964680832639,0.614321404198464,0,0,0,0,10.5562704063997,0.996239941255349,0,0,0.306806047506464,0,0,0.539210106883961,0.716084698702437,0,0.887790650732402,0,0,0,0,0,0,0,2.89999830173917,0.796554137998498,3.30529745380596,0.236387681767936,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.615602068030377,0,0,0,0,4.78501739597879,0,5.86338253620498,0,0,0,0,0,0,0,0,1.26598838716816,5.22344986109273,1.27217764290547,0,0,0.176915129006678,0,0,0,0,0.67401132980677,0,0.234264445725339,0,0,1.45668227720456,5.91876604274086,0,0,0.63186579628488,0,0,0.664653872707185,0,0.313932918407225,7.16834578637753,1.42304773014896,0,10.7607037767781,1.86185555087318,4.52707874218093,4.01871336956669,0,0.580537987734511,0.730893170861856,0.328461828212837,0.193978032976839,0,1.12990370390266,0,0,0,4.69323318563527,0.0801588202515337,0.426905989478705,2.19790570540343,0.576361668616424,0,0,0,0.124252535565433,3.06402245001834,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,1.16495949527454,2.52106183383116,2.14281231791033,0.943649613958588,0.78741985211799,0,0,0.681017030557878,0.482259445395058,0.962776056180637,0.415440338029185,0,0,0,0,15.3671129233436,2.6751839948849,0,0,0.575745591958336,0,0,1.77987976358325,0,0,0,1.19730191562487,0,0,0.79318464064088,0,0,0,0,0,14.0963004463334,5.87330769122321,1.41483874589699,6.62782488555513,0,0,0,1.91502377331055,0,0,0,0,0.314108192500469,0,0,0,5.73409195690071,5.76831067991632,0.248385611765534,0,3.12451019905266,0,0,0.235265819698172,2.81000943484129,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0.226705925512272,0.231522474323834,0,0,0.308801447160972,0.877136198314828,0,0.38582807654183,2.53413660979609,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,1.86623178009892,0,0,0,0,0,0,0,0,0,0,2.40171224485641,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.294443155503077,2.94924308369351,0.733714394086716,3.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| |||
|short_description=p4@SCNN1A | |||
}} |
Revision as of 11:39, 11 January 2014
Short description: | p4@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCNN1A_5end |
Coexpression cluster: | C2229_Amniotic_Placental_lung_thyroid_kidney_Small_testicular |
Association with transcript: | -142bp_to_ENST00000536411_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.44e-26 | 253 |
endo-epithelial cell | 1.21e-17 | 42 |
endodermal cell | 1.23e-17 | 58 |
respiratory epithelial cell | 1.54e-13 | 13 |
kidney tubule cell | 3.77e-13 | 10 |
nephron tubule epithelial cell | 3.77e-13 | 10 |
epithelial cell of nephron | 4.06e-10 | 15 |
kidney cell | 1.25e-08 | 17 |
kidney epithelial cell | 1.25e-08 | 17 |
epithelial cell of tracheobronchial tree | 2.71e-08 | 9 |
epithelial cell of lower respiratory tract | 2.71e-08 | 9 |
extraembryonic cell | 9.41e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.56e-12 | 106 |
cell type cancer | 7.11e-08 | 143 |
squamous cell carcinoma | 2.45e-07 | 14 |