FFCP PHASE1:Hg19::chr15:77907614..77907624,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84894 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21205 | |||
|TSSclassifier=strong | |||
|UniProt=Q96FE5 | |||
|association_with_transcript=170bp_to_AY324322_5end | |||
|coexpression_cluster_id=C2350 | |||
|description=CAGE_peak_17_at_LINGO1_5end | |||
|id=chr15:77907614..77907624,- | |||
|ontology_enrichment_celltype=CL:0000148!1.94e-13!10;CL:0000541!1.94e-13!10;CL:0002322!4.31e-11!5;CL:0000147!3.59e-09!14;CL:0000710!1.55e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000123;2.85e-10;2!CL:0000242;2.85e-10;2!CL:0002567;2.88e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.99e-10,2;CL:0002567,2.47e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.88e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.89e-37!82;UBERON:0005743!5.16e-35!86;UBERON:0001049!2.84e-34!57;UBERON:0005068!2.84e-34!57;UBERON:0006241!2.84e-34!57;UBERON:0007135!2.84e-34!57;UBERON:0000073!3.05e-34!94;UBERON:0001016!3.05e-34!94;UBERON:0002619!1.53e-33!22;UBERON:0000955!2.13e-32!69;UBERON:0006238!2.13e-32!69;UBERON:0002616!1.97e-30!59;UBERON:0001893!1.24e-29!34;UBERON:0001950!1.46e-29!20;UBERON:0001869!3.37e-29!32;UBERON:0000956!5.20e-29!25;UBERON:0000203!5.20e-29!25;UBERON:0002780!4.16e-28!41;UBERON:0001890!4.16e-28!41;UBERON:0006240!4.16e-28!41;UBERON:0002791!7.22e-28!33;UBERON:0002346!1.08e-27!90;UBERON:0003080!2.79e-27!42;UBERON:0002020!4.41e-27!34;UBERON:0003528!4.41e-27!34;UBERON:0003075!4.13e-24!86;UBERON:0007284!4.13e-24!86;UBERON:0000924!1.14e-21!173;UBERON:0006601!1.14e-21!173;UBERON:0003056!7.60e-20!61;UBERON:0004121!5.66e-19!169;UBERON:0000033!2.98e-17!123;UBERON:0000153!4.04e-17!129;UBERON:0007811!4.04e-17!129;UBERON:0001871!6.08e-15!7;UBERON:0000200!1.16e-14!6;UBERON:0007023!1.43e-14!115;UBERON:0000349!1.08e-11!5;UBERON:0002771!3.01e-08!3;UBERON:0003076!3.71e-08!15;UBERON:0003057!3.71e-08!15;UBERON:0001872!5.13e-08!5;UBERON:0004733!6.23e-08!12;UBERON:0002028!6.23e-08!12;UBERON:0007277!6.23e-08!12;UBERON:0004732!3.05e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;6.21e-13;22!UBERON:0000956;1.76e-11;25!UBERON:0000203;1.76e-11;25!UBERON:0001871;2.36e-11;6!UBERON:0002771;1.43e-10;2!UBERON:0001954;1.97e-10;2!UBERON:0003022;1.97e-10;2!UBERON:0002421;1.97e-10;2!UBERON:0002600;1.97e-10;2!UBERON:0001893;8.36e-09;34!UBERON:0002791;2.09e-08;32!UBERON:0001869;2.09e-08;32!UBERON:0001950;2.27e-08;20!UBERON:0003528;3.96e-08;34!UBERON:0002020;3.96e-08;34!UBERON:0000955;1.57e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,6.11e-13,22;UBERON:0000956,1.73e-11,25;UBERON:0000203,1.73e-11,25;UBERON:0001871,2.55e-11,6;UBERON:0002771,1.43e-10,2;UBERON:0001954,1.89e-10,2;UBERON:0003022,1.89e-10,2;UBERON:0002421,1.89e-10,2;UBERON:0002600,1.89e-10,2;UBERON:0000955,3.55e-09,68;UBERON:0006238,3.55e-09,68;UBERON:0002791,4.06e-09,32;UBERON:0001869,4.06e-09,32;UBERON:0003528,1.30e-08,34;UBERON:0002020,1.30e-08,34;UBERON:0001893,1.30e-08,34;UBERON:0000073,1.93e-08,53;UBERON:0002616,1.93e-08,53;UBERON:0001950,2.27e-08,20;UBERON:0001049,5.34e-08,56;UBERON:0005068,5.34e-08,56;UBERON:0006241,5.34e-08,56;UBERON:0007135,5.34e-08,56;UBERON:0001017,1.05e-07,81;UBERON:0002346,2.51e-07,86;UBERON:0002780,3.20e-07,41;UBERON:0001890,3.20e-07,41;UBERON:0003080,3.20e-07,41;UBERON:0006240,3.20e-07,41;UBERON:0001016,6.25e-07,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0.232387885739037,0.10366105501537,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0.308482478109971,0,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.74214478529481,3.99227596002388,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0,0,1.52581736317083,0.221158519862449,0.295547618953547,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503464760927528,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,1.22429104652196,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.50648636764703,0,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,2.38568906942791,0.136203406111576,0.321506296930038,0.275078873194468,0.83088067605837,0,0,0.242998226632099,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,4.27091927156871,0.625954653532499,0,0.110929051536852,0.0620964029413835,0,0,0,0.285465333544967,0,1.40500471742064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0,0,0,0,0,0,0,0.414775308455192,0,0.132864840313363,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0.127894371303652,0,0.629063767423586,0,0.169732529954025,2.33832412111851,0.867550349813015,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0.615349092722265,0.756215088665154,0.0691572524642179,0.484426936895553,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0.413373593002368,0.253663240775627,1.64092442705466,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.72350050919134,0,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38216317774326,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0,0,0.951880862672806,0.872701380680755,0.5290268405154,0,0,0,0,0.109265571963696,0,0,0,0,0.250707539292375,0.378893491091197,0,0,0.103432995861895,0,0.476128862927481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p17@LINGO1 | |||
}} |
Revision as of 00:41, 12 January 2014
Short description: | p17@LINGO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_LINGO1_5end |
Coexpression cluster: | C2350_medial_brain_amygdala_hippocampus_neuroectodermal_occipital_small |
Association with transcript: | 170bp_to_AY324322_5end |
EntrezGene: | LINGO1 |
HGNC: | 21205 |
UniProt: | Q96FE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.99e-10 | 2 |
light melanocyte | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 6.11e-13 | 22 |
cerebral cortex | 1.73e-11 | 25 |
pallium | 1.73e-11 | 25 |
temporal lobe | 2.55e-11 | 6 |
middle temporal gyrus | 1.43e-10 | 2 |
Ammon's horn | 1.89e-10 | 2 |
lobe parts of cerebral cortex | 1.89e-10 | 2 |
hippocampal formation | 1.89e-10 | 2 |
limbic lobe | 1.89e-10 | 2 |
brain | 3.55e-09 | 68 |
future brain | 3.55e-09 | 68 |
regional part of telencephalon | 4.06e-09 | 32 |
cerebral hemisphere | 4.06e-09 | 32 |
brain grey matter | 1.30e-08 | 34 |
gray matter | 1.30e-08 | 34 |
telencephalon | 1.30e-08 | 34 |
regional part of nervous system | 1.93e-08 | 53 |
regional part of brain | 1.93e-08 | 53 |
neocortex | 2.27e-08 | 20 |
neural tube | 5.34e-08 | 56 |
neural rod | 5.34e-08 | 56 |
future spinal cord | 5.34e-08 | 56 |
neural keel | 5.34e-08 | 56 |
central nervous system | 1.05e-07 | 81 |
neurectoderm | 2.51e-07 | 86 |
regional part of forebrain | 3.20e-07 | 41 |
forebrain | 3.20e-07 | 41 |
anterior neural tube | 3.20e-07 | 41 |
future forebrain | 3.20e-07 | 41 |
nervous system | 6.25e-07 | 89 |