FFCP PHASE1:Mm9::chr18:15222069..15222126,-: Difference between revisions
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{{FFCP|EntrezGene=106931|HGNC=|MCL_coexpression_id=720|UniProt=E9Q6T9|association_with_transcript=0bp_to_ENSMUST00000168989,NM_001142731,uc008edn.2,uc008edp.2_5end|description=CAGE_peak_1_at_Kctd1_5end|id=chr18:15222069..15222126,-|ontology_enrichment_celltype=CL:0000540!1.82e-16!33;CL:0000047!1.82e-16!33;CL:0000031!1.82e-16!33;CL:0000404!1.82e-16!33;CL:0002319!4.24e-15!43;CL:0000221!6.10e-15!44;CL:0000133!6.10e-15!44;CL:0000117!9.03e-14!23;CL:0000337!9.03e-14!23;CL:0000393!9.95e-12!39;CL:0000211!9.95e-12!39;CL:0000055!1.95e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.50e-16,33;CL:0000047,1.50e-16,33;CL:0000031,1.50e-16,33;CL:0000404,1.50e-16,33;CL:0002319,3.57e-15,43;CL:0000221,5.15e-15,44;CL:0000133,5.15e-15,44;CL:0000117,7.73e-14,23;CL:0000337,7.73e-14,23;CL:0000393,8.75e-12,39;CL:0000211,8.75e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.30e-27!73;UBERON:0005743!1.30e-27!73;UBERON:0000073!1.43e-26!75;UBERON:0001016!1.43e-26!75;UBERON:0004121!1.05e-25!102;UBERON:0000924!1.05e-25!102;UBERON:0006601!1.05e-25!102;UBERON:0002346!3.74e-22!71;UBERON:0003075!3.74e-22!71;UBERON:0007284!3.74e-22!71;UBERON:0001049!6.07e-20!52;UBERON:0005068!6.07e-20!52;UBERON:0006241!6.07e-20!52;UBERON:0007135!6.07e-20!52;UBERON:0000033!7.77e-20!63;UBERON:0000153!1.53e-19!94;UBERON:0000955!6.86e-19!50;UBERON:0006238!6.86e-19!50;UBERON:0002616!2.28e-18!49;UBERON:0007811!2.36e-18!86;UBERON:0003056!2.75e-16!49;UBERON:0002020!8.65e-16!34;UBERON:0003080!4.39e-15!40;UBERON:0002780!1.43e-14!39;UBERON:0001890!1.43e-14!39;UBERON:0006240!1.43e-14!39;UBERON:0002791!5.22e-13!29;UBERON:0003528!5.22e-13!29;UBERON:0001893!5.22e-13!29;UBERON:0000956!2.29e-08!21;UBERON:0001869!2.29e-08!21;UBERON:0000203!2.29e-08!21;UBERON:0002619!6.53e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.32e-28,73;UBERON:0001016,1.04e-26,75;UBERON:0004121,2.70e-25,95;UBERON:0000924,2.70e-25,95;UBERON:0006601,2.70e-25,95;UBERON:0002346,2.39e-22,64;UBERON:0003075,2.39e-22,64;UBERON:0007284,2.39e-22,64;UBERON:0000073,2.05e-21,54;UBERON:0001049,4.80e-20,52;UBERON:0005068,4.80e-20,52;UBERON:0006241,4.80e-20,52;UBERON:0007135,4.80e-20,52;UBERON:0010314,3.98e-19,92;UBERON:0010371,5.41e-19,73;UBERON:0000955,3.46e-17,47;UBERON:0006238,3.46e-17,47;UBERON:0002616,1.12e-16,46;UBERON:0003056,2.28e-16,49;UBERON:0002020,7.22e-16,34;UBERON:0003080,3.70e-15,40;UBERON:0002780,1.21e-14,39;UBERON:0001890,1.21e-14,39;UBERON:0006240,1.21e-14,39;UBERON:0003528,4.52e-13,29;UBERON:0002791,4.52e-13,29;UBERON:0001893,4.52e-13,29;UBERON:0000956,2.10e-08,21;UBERON:0001869,2.10e-08,21;UBERON:0000203,2.10e-08,21;UBERON:0002619,6.09e-07,17|phase1_expression=2.7225304007815,0.697950815278722,0,0,0,0.671517087647559,0.233612640595526,1.42035655785734,0.703943610758334,0.70219357896598,1.36974374580404,1.59544317990673,3.25281386869291,1.39872643870396,0.666219523631325,0.202475267389826,1.39912375625629,2.36596624018678,2.19383093769182,2.12194825899015,3.48677489619386,5.06383851124515,1.82839852397255,0.47997726838022,0.22940928106717,0.57423196411502,0,0.215471232685889,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.332469290716985,0.408338712524738,0,0,0,0,0.683045484958446,0,1.88845226963366,1.31790010585369,2.20256102594018,3.9119567217402,4.79655344036982,7.90870257844099,6.02732687130279,4.05960622713551,1.43752564364972,3.85899993932794,0.725362142011344,4.03312558970957,1.02903774414379,2.0057340795713,1.54701627683233,10.9250888864183,14.2827564403449,15.2119536841483,2.03306719241479,5.33576877666684,0.899899717281399,1.97773272513395,4.2628806896766,5.39280198933128,5.76327457982332,7.15458324928496,7.42532660824299,5.67877395648731,7.7125765789027,8.61387309711293,7.22695715368229,11.0222291670972,12.8690630125403,7.70811166995721,11.3641730895817,12.2885226604995,11.2103344570665,13.2657083223494,16.6692278578163,10.0505879640497,10.1297269805702,8.70950012327818,9.42811473515737,10.3931326983345,14.3527573285481,2.12033341332915,3.47629176491213,0.579728977403356,0,0,0,1.29955283489534,0.896053774194671,2.66844398250329,3.2381761289831,3.89679006904303,3.18005617059306,3.94361575374705,11.5493829672886,25.4805239706646,14.2213340630666,1.29894624606728,1.26679932737549,3.0331466700887,2.74041311325744,1.03575153458869,6.08612770165782,5.03107447621794,4.56698217468212,3.92046345335299,3.76806601381556,3.05730638552832,5.6549966098354,1.23597483867187,2.74738778147832,3.5384422077995,1.94120219936891,2.42925670306433,2.42437626567611,1.86391761218122,7.90508151931177,8.3778682725382,0,1.07833612055328,0.599902730993408,1.39777249780371,8.68785708547972,8.6925114535539,11.0575829859321,10.6032835317289,9.71718737855256,8.93488591606108,10.5456820994042,2.44414473240759,3.85661608891288,2.0217820674694,2.52530227063769,5.98554037628437,2.98872735763515,5.94205028357652,7.38453607395004,6.80364991513279,5.50888997224854,9.0890672822937,5.95017752699736,7.11374376678379,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:106931 | |||
|HGNC= | |||
|MCL_coexpression_id=720 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q6T9 | |||
|association_with_transcript=0bp_to_ENSMUST00000168989,NM_001142731,uc008edn.2,uc008edp.2_5end | |||
|cluster_id=chr18:15222069..15222126,- | |||
|description=CAGE_peak_1_at_Kctd1_5end | |||
|id=chr18:15222069..15222126,- | |||
|ontology_enrichment_celltype=CL:0000540!1.82e-16!33;CL:0000047!1.82e-16!33;CL:0000031!1.82e-16!33;CL:0000404!1.82e-16!33;CL:0002319!4.24e-15!43;CL:0000221!6.10e-15!44;CL:0000133!6.10e-15!44;CL:0000117!9.03e-14!23;CL:0000337!9.03e-14!23;CL:0000393!9.95e-12!39;CL:0000211!9.95e-12!39;CL:0000055!1.95e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.50e-16,33;CL:0000047,1.50e-16,33;CL:0000031,1.50e-16,33;CL:0000404,1.50e-16,33;CL:0002319,3.57e-15,43;CL:0000221,5.15e-15,44;CL:0000133,5.15e-15,44;CL:0000117,7.73e-14,23;CL:0000337,7.73e-14,23;CL:0000393,8.75e-12,39;CL:0000211,8.75e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.30e-27!73;UBERON:0005743!1.30e-27!73;UBERON:0000073!1.43e-26!75;UBERON:0001016!1.43e-26!75;UBERON:0004121!1.05e-25!102;UBERON:0000924!1.05e-25!102;UBERON:0006601!1.05e-25!102;UBERON:0002346!3.74e-22!71;UBERON:0003075!3.74e-22!71;UBERON:0007284!3.74e-22!71;UBERON:0001049!6.07e-20!52;UBERON:0005068!6.07e-20!52;UBERON:0006241!6.07e-20!52;UBERON:0007135!6.07e-20!52;UBERON:0000033!7.77e-20!63;UBERON:0000153!1.53e-19!94;UBERON:0000955!6.86e-19!50;UBERON:0006238!6.86e-19!50;UBERON:0002616!2.28e-18!49;UBERON:0007811!2.36e-18!86;UBERON:0003056!2.75e-16!49;UBERON:0002020!8.65e-16!34;UBERON:0003080!4.39e-15!40;UBERON:0002780!1.43e-14!39;UBERON:0001890!1.43e-14!39;UBERON:0006240!1.43e-14!39;UBERON:0002791!5.22e-13!29;UBERON:0003528!5.22e-13!29;UBERON:0001893!5.22e-13!29;UBERON:0000956!2.29e-08!21;UBERON:0001869!2.29e-08!21;UBERON:0000203!2.29e-08!21;UBERON:0002619!6.53e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.32e-28,73;UBERON:0001016,1.04e-26,75;UBERON:0004121,2.70e-25,95;UBERON:0000924,2.70e-25,95;UBERON:0006601,2.70e-25,95;UBERON:0002346,2.39e-22,64;UBERON:0003075,2.39e-22,64;UBERON:0007284,2.39e-22,64;UBERON:0000073,2.05e-21,54;UBERON:0001049,4.80e-20,52;UBERON:0005068,4.80e-20,52;UBERON:0006241,4.80e-20,52;UBERON:0007135,4.80e-20,52;UBERON:0010314,3.98e-19,92;UBERON:0010371,5.41e-19,73;UBERON:0000955,3.46e-17,47;UBERON:0006238,3.46e-17,47;UBERON:0002616,1.12e-16,46;UBERON:0003056,2.28e-16,49;UBERON:0002020,7.22e-16,34;UBERON:0003080,3.70e-15,40;UBERON:0002780,1.21e-14,39;UBERON:0001890,1.21e-14,39;UBERON:0006240,1.21e-14,39;UBERON:0003528,4.52e-13,29;UBERON:0002791,4.52e-13,29;UBERON:0001893,4.52e-13,29;UBERON:0000956,2.10e-08,21;UBERON:0001869,2.10e-08,21;UBERON:0000203,2.10e-08,21;UBERON:0002619,6.09e-07,17 | |||
|phase1_expression=2.7225304007815,0.697950815278722,0,0,0,0.671517087647559,0.233612640595526,1.42035655785734,0.703943610758334,0.70219357896598,1.36974374580404,1.59544317990673,3.25281386869291,1.39872643870396,0.666219523631325,0.202475267389826,1.39912375625629,2.36596624018678,2.19383093769182,2.12194825899015,3.48677489619386,5.06383851124515,1.82839852397255,0.47997726838022,0.22940928106717,0.57423196411502,0,0.215471232685889,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.332469290716985,0.408338712524738,0,0,0,0,0.683045484958446,0,1.88845226963366,1.31790010585369,2.20256102594018,3.9119567217402,4.79655344036982,7.90870257844099,6.02732687130279,4.05960622713551,1.43752564364972,3.85899993932794,0.725362142011344,4.03312558970957,1.02903774414379,2.0057340795713,1.54701627683233,10.9250888864183,14.2827564403449,15.2119536841483,2.03306719241479,5.33576877666684,0.899899717281399,1.97773272513395,4.2628806896766,5.39280198933128,5.76327457982332,7.15458324928496,7.42532660824299,5.67877395648731,7.7125765789027,8.61387309711293,7.22695715368229,11.0222291670972,12.8690630125403,7.70811166995721,11.3641730895817,12.2885226604995,11.2103344570665,13.2657083223494,16.6692278578163,10.0505879640497,10.1297269805702,8.70950012327818,9.42811473515737,10.3931326983345,14.3527573285481,2.12033341332915,3.47629176491213,0.579728977403356,0,0,0,1.29955283489534,0.896053774194671,2.66844398250329,3.2381761289831,3.89679006904303,3.18005617059306,3.94361575374705,11.5493829672886,25.4805239706646,14.2213340630666,1.29894624606728,1.26679932737549,3.0331466700887,2.74041311325744,1.03575153458869,6.08612770165782,5.03107447621794,4.56698217468212,3.92046345335299,3.76806601381556,3.05730638552832,5.6549966098354,1.23597483867187,2.74738778147832,3.5384422077995,1.94120219936891,2.42925670306433,2.42437626567611,1.86391761218122,7.90508151931177,8.3778682725382,0,1.07833612055328,0.599902730993408,1.39777249780371,8.68785708547972,8.6925114535539,11.0575829859321,10.6032835317289,9.71718737855256,8.93488591606108,10.5456820994042,2.44414473240759,3.85661608891288,2.0217820674694,2.52530227063769,5.98554037628437,2.98872735763515,5.94205028357652,7.38453607395004,6.80364991513279,5.50888997224854,9.0890672822937,5.95017752699736,7.11374376678379,7.94245536704841,6.862093842394,4.82230611340665,7.78532297831674,3.48252166522167,4.52720700097476,2.58744546864041,0.702213187313235,0.51469581422943,0.568326998791185,3.93538967817454,6.80125573945179,6.12211008967451,3.78791576936336,5.70616272067471,4.16521204795921,5.8133486187602,3.48755421819505,3.38619492864792,4.44311594766397,3.2833492815819,3.16168357228837,3.65499968563331,3.29325172936576,3.35516046900929,6.72927835405207,10.496270462687,0.660837565967596,1.05780226665418,4.26576501070468,5.57368012465052,3.09281907173024,2.8235693447268,0.889512175379481,1.71203063501303,0.949058123089023,1.97638745668813,3.77002813200404,1.1937388322469,2.72949721966768,0,0.864552199498777,1.1948476395262,5.87970492954553,6.740662243974,3.38123207019241,5.90588850751411,9.89157684554891,5.47059395144485,4.7427402843193,4.28069429140846,4.86696056308262,3.94870924549762,0.592905254174298,1.00107063429656,1.37591296579242,0.899448449539415,0,0.964708639009667,1.01850340712568,0.287696137450811,0.324270453550071,0,0,0,0.936113019343682,0.505157755894224,0.358794827043824,0,4.61882975416512,5.30575952957357,4.07412441105065,5.60158783058121,3.05097322775053,3.1826188913945,2.61848004974615,3.90267295715598,3.62560831444239,2.6575762757853,2.71073106717728,3.76885623846197,2.07221978239075,1.59113964439663,3.01582567878545,0,3.44234991113325,3.86311444826625,5.77982123956051,8.08760637486202,4.59017847054691,1.00988370881749,6.31016438832513,4.29482618726302,9.47862950024315,9.31978312014953,9.58034298554295,10.190755108398,5.66734982344852,8.18316402151673,7.90575555893047,8.35435422696698,7.66476460124651,3.5613120733451,4.23506094319298,6.76377504187395,6.63725691699814,3.64170954232472,4.83717691143602,3.77210159511796,4.72483028609236,3.99665692327106,4.39328098385976,2.18120237686503,2.13898427030833,4.10847785316561,2.10837217149998,5.15677716240934,3.74483566329167,4.14140516272013,4.91562998374467,7.07312215604255,5.85222771019503,7.49149033928696,7.56925494769756,2.74018454203139,0.704015124191131,0.42366414172764,6.17479514553893,4.122156323537,0.968786560175433,2.17126529741361,3.81991500810037,2.46211349617592,0.582961673259701,7.78786268444141,2.56306321196779,2.68302928352189,1.66675074632741,0.941842285023455,1.91371918809435,2.28778173206523,1.18984900995699,1.25956307091292,1.10559979043539,0.954670618015114,4.9032079005076,4.06638934253697,3.88819226958485,2.92723614420256,3.9305261474312,3.2367443132357,2.47960367176008,1.83229159388821,0.90730481304255,6.21339313086926,0.56369293868419,2.54178128274764,3.30916980914195,4.083474955225,3.09983576346555,2.53434188236167,3.75543163666413,2.99470085141085,3.8797957437513,1.2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| |||
|short_description=p1@Kctd1 | |||
}} |
Revision as of 13:20, 5 August 2015
Short description: | p1@Kctd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kctd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:720 |
Association with transcript: | 0bp_to_ENSMUST00000168989, NM_001142731, uc008edn.2, uc008edp.2_5end |
EntrezGene: | 106931 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.50e-16 | 33 |
neuronal stem cell | 1.50e-16 | 33 |
neuroblast | 1.50e-16 | 33 |
electrically signaling cell | 1.50e-16 | 33 |
neural cell | 3.57e-15 | 43 |
ectodermal cell | 5.15e-15 | 44 |
neurectodermal cell | 5.15e-15 | 44 |
CNS neuron (sensu Vertebrata) | 7.73e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.73e-14 | 23 |
electrically responsive cell | 8.75e-12 | 39 |
electrically active cell | 8.75e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.32e-28 | 73 |
nervous system | 1.04e-26 | 75 |
ectoderm-derived structure | 2.70e-25 | 95 |
ectoderm | 2.70e-25 | 95 |
presumptive ectoderm | 2.70e-25 | 95 |
neurectoderm | 2.39e-22 | 64 |
neural plate | 2.39e-22 | 64 |
presumptive neural plate | 2.39e-22 | 64 |
regional part of nervous system | 2.05e-21 | 54 |
neural tube | 4.80e-20 | 52 |
neural rod | 4.80e-20 | 52 |
future spinal cord | 4.80e-20 | 52 |
neural keel | 4.80e-20 | 52 |
structure with developmental contribution from neural crest | 3.98e-19 | 92 |
ecto-epithelium | 5.41e-19 | 73 |
brain | 3.46e-17 | 47 |
future brain | 3.46e-17 | 47 |
regional part of brain | 1.12e-16 | 46 |
pre-chordal neural plate | 2.28e-16 | 49 |
gray matter | 7.22e-16 | 34 |
anterior neural tube | 3.70e-15 | 40 |
regional part of forebrain | 1.21e-14 | 39 |
forebrain | 1.21e-14 | 39 |
future forebrain | 1.21e-14 | 39 |
brain grey matter | 4.52e-13 | 29 |
regional part of telencephalon | 4.52e-13 | 29 |
telencephalon | 4.52e-13 | 29 |
cerebral cortex | 2.10e-08 | 21 |
cerebral hemisphere | 2.10e-08 | 21 |
pallium | 2.10e-08 | 21 |
regional part of cerebral cortex | 6.09e-07 | 17 |