FFCP PHASE1:Mm9::chr1:165709942..165709996,+: Difference between revisions
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{{FFCP|EntrezGene=16579|HGNC=|MCL_coexpression_id=399|UniProt=P70188|association_with_transcript=132bp_to_NM_010629,uc007dho.1_5end|description=CAGE_peak_4_at_Kifap3_5end|id=chr1:165709942..165709996,+|ontology_enrichment_celltype=CL:0000540!1.83e-08!33;CL:0000047!1.83e-08!33;CL:0000031!1.83e-08!33;CL:0000404!1.83e-08!33;CL:0000393!2.67e-07!39;CL:0000211!2.67e-07!39;CL:0000117!5.70e-07!23;CL:0000337!5.70e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.19e-08,33;CL:0000047,1.19e-08,33;CL:0000031,1.19e-08,33;CL:0000404,1.19e-08,33;CL:0000393,1.86e-07,39;CL:0000211,1.86e-07,39;CL:0000117,4.07e-07,23;CL:0000337,4.07e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.49e-19!71;UBERON:0003075!1.49e-19!71;UBERON:0007284!1.49e-19!71;UBERON:0004121!3.77e-18!102;UBERON:0000924!3.77e-18!102;UBERON:0006601!3.77e-18!102;UBERON:0001017!9.36e-17!73;UBERON:0005743!9.36e-17!73;UBERON:0000073!1.17e-16!75;UBERON:0001016!1.17e-16!75;UBERON:0003056!5.92e-16!49;UBERON:0000033!3.33e-15!63;UBERON:0001049!1.34e-14!52;UBERON:0005068!1.34e-14!52;UBERON:0006241!1.34e-14!52;UBERON:0007135!1.34e-14!52;UBERON:0000955!1.04e-12!50;UBERON:0006238!1.04e-12!50;UBERON:0002616!1.94e-12!49;UBERON:0003080!5.68e-12!40;UBERON:0002780!1.64e-11!39;UBERON:0001890!1.64e-11!39;UBERON:0006240!1.64e-11!39;UBERON:0002020!2.74e-11!34;UBERON:0002791!2.81e-09!29;UBERON:0003528!2.81e-09!29;UBERON:0001893!2.81e-09!29;UBERON:0000468!3.82e-09!333;UBERON:0000153!8.49e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.68e-19,64;UBERON:0003075,2.68e-19,64;UBERON:0007284,2.68e-19,64;UBERON:0004121,9.48e-18,95;UBERON:0000924,9.48e-18,95;UBERON:0006601,9.48e-18,95;UBERON:0010371,2.72e-17,73;UBERON:0001017,1.55e-16,73;UBERON:0001016,1.91e-16,75;UBERON:0010314,5.55e-16,92;UBERON:0003056,6.18e-16,49;UBERON:0001049,2.24e-14,52;UBERON:0005068,2.24e-14,52;UBERON:0006241,2.24e-14,52;UBERON:0007135,2.24e-14,52;UBERON:0000073,2.60e-14,54;UBERON:0000955,4.42e-12,47;UBERON:0006238,4.42e-12,47;UBERON:0003080,4.51e-12,40;UBERON:0002616,8.28e-12,46;UBERON:0002780,1.33e-11,39;UBERON:0001890,1.33e-11,39;UBERON:0006240,1.33e-11,39;UBERON:0002020,2.31e-11,34;UBERON:0003528,2.64e-09,29;UBERON:0002791,2.64e-09,29;UBERON:0001893,2.64e-09,29;UBERON:0000922,1.61e-08,320|phase1_expression=2.5623815536767,0,0,0.30246421130683,0,1.34303417529512,0.700837921786577,0.258246646883153,0.281577444303333,0.468129052643987,0,0,0,0.0874204024189974,0,0.202475267389826,0,0.473193248037357,0.137114433605739,0,2.21112554392781,0.893618560807968,0.261199789138935,0.639969691173627,1.14704640533585,0,0.430761996159075,1.07735616342945,2.28028103347649,1.26015064879965,0.886922042621219,0,0.61506478758457,0,2.02196133825892,0.831173226792462,1.22501613757421,0,0,0,0,0,0,2.01434908760924,1.52065396829272,1.10128051297009,0.782391344348039,0.872100625521786,1.09843091367236,0.777719596297134,0.419959264876088,2.87505128729943,0.335565212115473,0.725362142011344,0.672187598284928,2.82985379639542,1.71920063963254,2.57836046138721,6.47412674750713,5.81890077199236,7.60597684207415,0.677689064138264,0,0,0,0,0.599200221036809,1.15265491596466,4.35496371695606,3.10513658162888,5.46844899513593,4.57041575046086,3.09215957332259,4.16468717330844,3.64212789869298,1.83843757322004,2.20231761998777,5.49055553766307,3.84016333140609,7.38563211289086,7.04454855738554,9.37644067002168,2.23346399201105,4.50210088025344,3.97275444219706,7.95497180778903,11.6744778255264,9.69277118291563,2.27178579999552,2.94729084416464,0.579728977403356,0,0,0,0,0,0.842666520790511,2.55645483867087,2.07828803682295,0.70667914902068,2.67602497575693,0,0,0,0.432982082022428,0.253359865475099,0,1.25602267690966,1.8125651855302,1.48442139064825,5.37804512975021,3.04465478312141,3.45923245884088,2.71300752994721,3.88042733547826,1.25666591329675,1.48316980640624,1.87979163995885,1.76922110389975,2.10296904931632,0.441683036920787,1.45462575940567,0,1.46390398505774,14.2423760633149,1.02182822083437,0.479260498023681,0,0.762421362438388,6.74057877321702,6.40500843946077,8.41884159156192,5.21472960576829,9.2057564638919,6.64921742590592,8.27430441645564,2.03678727700633,1.24406970610093,1.0108910337347,0.841767423545896,12.3614420814569,7.12696523743766,10.0834792690996,11.3028613376786,9.32100038373192,11.4021211053516,8.05834831213668,5.69147415625834,4.52692785158969,4.72765200419548,4.39877810409872,3.72632745126877,3.05851974148158,2.43776516565517,2.88094990971121,3.18454826909589,0,0.51469581422943,0.284163499395593,5.38527008592305,5.8631514995274,4.50155153652537,4.7348947117042,2.95146347621106,2.77680803197281,3.25547522650571,1.07309360559848,3.26942958628075,0.987359099480883,0.820837320395476,1.13496333364198,0.584799949701329,0.439100230582101,1.07365135008297,6.72927835405207,10.3933658503077,0.330418782983798,1.32225283331772,5.33220626338085,7.66381017139447,4.12375876230699,3.22693639397348,2.44615848229357,0.951128130562796,0.474529061544512,0.329397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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16579 | |||
|HGNC= | |||
|MCL_coexpression_id=399 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P70188 | |||
|association_with_transcript=132bp_to_NM_010629,uc007dho.1_5end | |||
|cluster_id=chr1:165709942..165709996,+ | |||
|description=CAGE_peak_4_at_Kifap3_5end | |||
|id=chr1:165709942..165709996,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.83e-08!33;CL:0000047!1.83e-08!33;CL:0000031!1.83e-08!33;CL:0000404!1.83e-08!33;CL:0000393!2.67e-07!39;CL:0000211!2.67e-07!39;CL:0000117!5.70e-07!23;CL:0000337!5.70e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.19e-08,33;CL:0000047,1.19e-08,33;CL:0000031,1.19e-08,33;CL:0000404,1.19e-08,33;CL:0000393,1.86e-07,39;CL:0000211,1.86e-07,39;CL:0000117,4.07e-07,23;CL:0000337,4.07e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.49e-19!71;UBERON:0003075!1.49e-19!71;UBERON:0007284!1.49e-19!71;UBERON:0004121!3.77e-18!102;UBERON:0000924!3.77e-18!102;UBERON:0006601!3.77e-18!102;UBERON:0001017!9.36e-17!73;UBERON:0005743!9.36e-17!73;UBERON:0000073!1.17e-16!75;UBERON:0001016!1.17e-16!75;UBERON:0003056!5.92e-16!49;UBERON:0000033!3.33e-15!63;UBERON:0001049!1.34e-14!52;UBERON:0005068!1.34e-14!52;UBERON:0006241!1.34e-14!52;UBERON:0007135!1.34e-14!52;UBERON:0000955!1.04e-12!50;UBERON:0006238!1.04e-12!50;UBERON:0002616!1.94e-12!49;UBERON:0003080!5.68e-12!40;UBERON:0002780!1.64e-11!39;UBERON:0001890!1.64e-11!39;UBERON:0006240!1.64e-11!39;UBERON:0002020!2.74e-11!34;UBERON:0002791!2.81e-09!29;UBERON:0003528!2.81e-09!29;UBERON:0001893!2.81e-09!29;UBERON:0000468!3.82e-09!333;UBERON:0000153!8.49e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.68e-19,64;UBERON:0003075,2.68e-19,64;UBERON:0007284,2.68e-19,64;UBERON:0004121,9.48e-18,95;UBERON:0000924,9.48e-18,95;UBERON:0006601,9.48e-18,95;UBERON:0010371,2.72e-17,73;UBERON:0001017,1.55e-16,73;UBERON:0001016,1.91e-16,75;UBERON:0010314,5.55e-16,92;UBERON:0003056,6.18e-16,49;UBERON:0001049,2.24e-14,52;UBERON:0005068,2.24e-14,52;UBERON:0006241,2.24e-14,52;UBERON:0007135,2.24e-14,52;UBERON:0000073,2.60e-14,54;UBERON:0000955,4.42e-12,47;UBERON:0006238,4.42e-12,47;UBERON:0003080,4.51e-12,40;UBERON:0002616,8.28e-12,46;UBERON:0002780,1.33e-11,39;UBERON:0001890,1.33e-11,39;UBERON:0006240,1.33e-11,39;UBERON:0002020,2.31e-11,34;UBERON:0003528,2.64e-09,29;UBERON:0002791,2.64e-09,29;UBERON:0001893,2.64e-09,29;UBERON:0000922,1.61e-08,320 | |||
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| |||
|short_description=p4@Kifap3 | |||
}} |
Revision as of 03:38, 5 August 2015
Short description: | p4@Kifap3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Kifap3_5end |
Coexpression cluster: | MCL_coexpression_mm9:399 |
Association with transcript: | 132bp_to_NM_010629, uc007dho.1_5end |
EntrezGene: | 16579 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.19e-08 | 33 |
neuronal stem cell | 1.19e-08 | 33 |
neuroblast | 1.19e-08 | 33 |
electrically signaling cell | 1.19e-08 | 33 |
electrically responsive cell | 1.86e-07 | 39 |
electrically active cell | 1.86e-07 | 39 |
CNS neuron (sensu Vertebrata) | 4.07e-07 | 23 |
neuroblast (sensu Vertebrata) | 4.07e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.68e-19 | 64 |
neural plate | 2.68e-19 | 64 |
presumptive neural plate | 2.68e-19 | 64 |
ectoderm-derived structure | 9.48e-18 | 95 |
ectoderm | 9.48e-18 | 95 |
presumptive ectoderm | 9.48e-18 | 95 |
ecto-epithelium | 2.72e-17 | 73 |
central nervous system | 1.55e-16 | 73 |
nervous system | 1.91e-16 | 75 |
structure with developmental contribution from neural crest | 5.55e-16 | 92 |
pre-chordal neural plate | 6.18e-16 | 49 |
neural tube | 2.24e-14 | 52 |
neural rod | 2.24e-14 | 52 |
future spinal cord | 2.24e-14 | 52 |
neural keel | 2.24e-14 | 52 |
regional part of nervous system | 2.60e-14 | 54 |
brain | 4.42e-12 | 47 |
future brain | 4.42e-12 | 47 |
anterior neural tube | 4.51e-12 | 40 |
regional part of brain | 8.28e-12 | 46 |
regional part of forebrain | 1.33e-11 | 39 |
forebrain | 1.33e-11 | 39 |
future forebrain | 1.33e-11 | 39 |
gray matter | 2.31e-11 | 34 |
brain grey matter | 2.64e-09 | 29 |
regional part of telencephalon | 2.64e-09 | 29 |
telencephalon | 2.64e-09 | 29 |
embryo | 1.61e-08 | 320 |