FFCP PHASE1:Mm9::chr3:145421638..145421649,+: Difference between revisions
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{{FFCP|EntrezGene=69219|HGNC=|UniProt=Q9CWS0|association_with_transcript=0bp_to_ENSMUST00000029845_5end|description=CAGE_peak_3_at_Ddah1_5end|id=chr3:145421638..145421649,+|ontology_enrichment_celltype=CL:0000055!1.72e-17!50;CL:0002319!1.45e-15!43;CL:0000221!4.18e-15!44;CL:0000133!4.18e-15!44;CL:0000393!4.60e-12!39;CL:0000211!4.60e-12!39;CL:0000117!1.70e-11!23;CL:0000337!1.70e-11!23;CL:0000540!1.12e-10!33;CL:0000047!1.12e-10!33;CL:0000031!1.12e-10!33;CL:0000404!1.12e-10!33;CL:0002321!2.18e-08!70;CL:0000220!2.18e-08!70|ontology_enrichment_celltype_v019_2=CL:0002319,1.67e-16,43;CL:0000221,1.03e-15,44;CL:0000133,1.03e-15,44;CL:0000393,5.65e-13,39;CL:0000211,5.65e-13,39;CL:0000117,8.29e-13,23;CL:0000337,8.29e-13,23;CL:0000540,2.31e-11,33;CL:0000047,2.31e-11,33;CL:0000031,2.31e-11,33;CL:0000404,2.31e-11,33;CL:0002321,9.20e-10,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.60e-20!75;UBERON:0001016!3.60e-20!75;UBERON:0001017!6.47e-19!73;UBERON:0005743!6.47e-19!73;UBERON:0001049!4.64e-14!52;UBERON:0005068!4.64e-14!52;UBERON:0006241!4.64e-14!52;UBERON:0007135!4.64e-14!52;UBERON:0004121!9.00e-14!102;UBERON:0000924!9.00e-14!102;UBERON:0006601!9.00e-14!102;UBERON:0002020!5.48e-13!34;UBERON:0000955!2.55e-12!50;UBERON:0006238!2.55e-12!50;UBERON:0002616!3.71e-12!49;UBERON:0000025!6.69e-11!114;UBERON:0000033!1.27e-10!63;UBERON:0003080!5.74e-10!40;UBERON:0002346!6.75e-10!71;UBERON:0003075!6.75e-10!71;UBERON:0007284!6.75e-10!71;UBERON:0002791!8.31e-10!29;UBERON:0003528!8.31e-10!29;UBERON:0001893!8.31e-10!29;UBERON:0002780!1.73e-09!39;UBERON:0001890!1.73e-09!39;UBERON:0006240!1.73e-09!39;UBERON:0004111!2.38e-09!122;UBERON:0003056!8.41e-09!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.77e-19,75;UBERON:0001017,1.72e-17,73;UBERON:0000073,5.48e-14,54;UBERON:0002020,8.81e-14,34;UBERON:0004121,6.37e-13,95;UBERON:0000924,6.37e-13,95;UBERON:0006601,6.37e-13,95;UBERON:0001049,1.05e-12,52;UBERON:0005068,1.05e-12,52;UBERON:0006241,1.05e-12,52;UBERON:0007135,1.05e-12,52;UBERON:0003528,3.52e-10,29;UBERON:0002791,3.52e-10,29;UBERON:0001893,3.52e-10,29;UBERON:0002346,7.47e-10,64;UBERON:0003075,7.47e-10,64;UBERON:0007284,7.47e-10,64;UBERON:0003080,2.41e-09,40;UBERON:0000955,2.92e-09,47;UBERON:0006238,2.92e-09,47;UBERON:0002616,4.47e-09,46;UBERON:0002780,7.92e-09,39;UBERON:0001890,7.92e-09,39;UBERON:0006240,7.92e-09,39;UBERON:0000025,2.46e-08,114;UBERON:0010371,9.37e-08,73;UBERON:0003056,5.22e-07,49|phase1_expression=1.28119077683835,0,0,0,1.00179145989269,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0.159992422793407,0.45881856213434,1.14846392823004,1.29228598847722,0.430942465371778,4.18051522804023,2.01624103807945,1.77384408524244,0,0,0,0,0.332469290716985,0.612508068787107,0,0,0,0,0,0,2.14024590558481,1.82478476195126,1.65192076945513,0.782391344348039,6.97680500417429,7.24964403023757,5.44403717407994,2.65974201088189,8.62515386189829,0,0,0,2.57259436035947,1.71920063963254,1.54701627683233,3.23706337375356,0.528990979272033,3.80298842103708,2.37191172448392,0,0,0,0,3.29560121570245,3.84218305321555,1.8664130215526,1.89008313664367,1.47227472945967,8.85518051651791,7.28866185140325,3.55223317723367,2.1086003624012,1.83843757322004,3.30347642998166,5.36286819957788,4.91540906419979,7.12185953743047,8.23388792421687,3.64639359389732,3.35019598801657,4.50210088025344,5.65353516774197,9.42811473515737,7.83044244395066,5.21918448310842,5.60373830665562,4.83657984683427,0.579728977403356,2.58127163094416,0.679971333707751,1.07940638327563,5.19821133958135,1.34408066129201,0.842666520790511,1.02258193546835,1.03914401841148,1.7666978725517,0.563373679106722,0,0,0,0,1.26679932737549,0,0.79928715803342,0,0,0.346970653532272,0.304465478312141,0.691846491768175,0.60289056221049,0.352766121407114,0.376999773989026,2.22475470960936,0.289198713839823,0,0.970601099684455,0.441683036920787,0,3.72783522436244,0.878342391034642,0.83778682725382,0.510914110417183,0,0,0,3.59497534571574,1.37250180845588,5.40313714085317,2.78118912307642,1.53429274398198,4.36354893575076,3.0825839982874,1.2220723662038,0,0,0.841767423545896,0.780722657776222,1.14951052216736,0.900310649026746,0.150704817835715,1.7009124787832,0.768682321709099,1.78033276663485,0.517406741478031,0.215567992932842,0.756424320671277,1.05570674498369,0.876782929710299,0.278047249225598,0.348252166522167,0.823128545631774,0.59710280045548,0,0,0,1.03562886267751,1.87620847984877,0.540186184383045,0.473489471170421,0.393528463494808,0.925602677324269,0.930135779001631,1.60964040839772,0.467061369468678,0.493679549740441,0.492502392237286,0.324275238183423,0.146199987425332,0.219550115291051,0,0.841159794256509,2.77842453424068,0,1.58670339998127,0.639864751605702,1.16118335930219,1.28867461322093,1.61346819698674,3.11329261382818,1.14135375667535,0.474529061544512,0.988193728344065,0.754005626400808,0.795825888164603,0.974820435595601,0.898819408654221,0.648414149624083,0.597423819763102,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69219 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9CWS0 | |||
|association_with_transcript=0bp_to_ENSMUST00000029845_5end | |||
|cluster_id=chr3:145421638..145421649,+ | |||
|description=CAGE_peak_3_at_Ddah1_5end | |||
|id=chr3:145421638..145421649,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.72e-17!50;CL:0002319!1.45e-15!43;CL:0000221!4.18e-15!44;CL:0000133!4.18e-15!44;CL:0000393!4.60e-12!39;CL:0000211!4.60e-12!39;CL:0000117!1.70e-11!23;CL:0000337!1.70e-11!23;CL:0000540!1.12e-10!33;CL:0000047!1.12e-10!33;CL:0000031!1.12e-10!33;CL:0000404!1.12e-10!33;CL:0002321!2.18e-08!70;CL:0000220!2.18e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.67e-16,43;CL:0000221,1.03e-15,44;CL:0000133,1.03e-15,44;CL:0000393,5.65e-13,39;CL:0000211,5.65e-13,39;CL:0000117,8.29e-13,23;CL:0000337,8.29e-13,23;CL:0000540,2.31e-11,33;CL:0000047,2.31e-11,33;CL:0000031,2.31e-11,33;CL:0000404,2.31e-11,33;CL:0002321,9.20e-10,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.60e-20!75;UBERON:0001016!3.60e-20!75;UBERON:0001017!6.47e-19!73;UBERON:0005743!6.47e-19!73;UBERON:0001049!4.64e-14!52;UBERON:0005068!4.64e-14!52;UBERON:0006241!4.64e-14!52;UBERON:0007135!4.64e-14!52;UBERON:0004121!9.00e-14!102;UBERON:0000924!9.00e-14!102;UBERON:0006601!9.00e-14!102;UBERON:0002020!5.48e-13!34;UBERON:0000955!2.55e-12!50;UBERON:0006238!2.55e-12!50;UBERON:0002616!3.71e-12!49;UBERON:0000025!6.69e-11!114;UBERON:0000033!1.27e-10!63;UBERON:0003080!5.74e-10!40;UBERON:0002346!6.75e-10!71;UBERON:0003075!6.75e-10!71;UBERON:0007284!6.75e-10!71;UBERON:0002791!8.31e-10!29;UBERON:0003528!8.31e-10!29;UBERON:0001893!8.31e-10!29;UBERON:0002780!1.73e-09!39;UBERON:0001890!1.73e-09!39;UBERON:0006240!1.73e-09!39;UBERON:0004111!2.38e-09!122;UBERON:0003056!8.41e-09!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.77e-19,75;UBERON:0001017,1.72e-17,73;UBERON:0000073,5.48e-14,54;UBERON:0002020,8.81e-14,34;UBERON:0004121,6.37e-13,95;UBERON:0000924,6.37e-13,95;UBERON:0006601,6.37e-13,95;UBERON:0001049,1.05e-12,52;UBERON:0005068,1.05e-12,52;UBERON:0006241,1.05e-12,52;UBERON:0007135,1.05e-12,52;UBERON:0003528,3.52e-10,29;UBERON:0002791,3.52e-10,29;UBERON:0001893,3.52e-10,29;UBERON:0002346,7.47e-10,64;UBERON:0003075,7.47e-10,64;UBERON:0007284,7.47e-10,64;UBERON:0003080,2.41e-09,40;UBERON:0000955,2.92e-09,47;UBERON:0006238,2.92e-09,47;UBERON:0002616,4.47e-09,46;UBERON:0002780,7.92e-09,39;UBERON:0001890,7.92e-09,39;UBERON:0006240,7.92e-09,39;UBERON:0000025,2.46e-08,114;UBERON:0010371,9.37e-08,73;UBERON:0003056,5.22e-07,49 | |||
|phase1_expression=1.28119077683835,0,0,0,1.00179145989269,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0.159992422793407,0.45881856213434,1.14846392823004,1.29228598847722,0.430942465371778,4.18051522804023,2.01624103807945,1.77384408524244,0,0,0,0,0.332469290716985,0.612508068787107,0,0,0,0,0,0,2.14024590558481,1.82478476195126,1.65192076945513,0.782391344348039,6.97680500417429,7.24964403023757,5.44403717407994,2.65974201088189,8.62515386189829,0,0,0,2.57259436035947,1.71920063963254,1.54701627683233,3.23706337375356,0.528990979272033,3.80298842103708,2.37191172448392,0,0,0,0,3.29560121570245,3.84218305321555,1.8664130215526,1.89008313664367,1.47227472945967,8.85518051651791,7.28866185140325,3.55223317723367,2.1086003624012,1.83843757322004,3.30347642998166,5.36286819957788,4.91540906419979,7.12185953743047,8.23388792421687,3.64639359389732,3.35019598801657,4.50210088025344,5.65353516774197,9.42811473515737,7.83044244395066,5.21918448310842,5.60373830665562,4.83657984683427,0.579728977403356,2.58127163094416,0.679971333707751,1.07940638327563,5.19821133958135,1.34408066129201,0.842666520790511,1.02258193546835,1.03914401841148,1.7666978725517,0.563373679106722,0,0,0,0,1.26679932737549,0,0.79928715803342,0,0,0.346970653532272,0.304465478312141,0.691846491768175,0.60289056221049,0.352766121407114,0.376999773989026,2.22475470960936,0.289198713839823,0,0.970601099684455,0.441683036920787,0,3.72783522436244,0.878342391034642,0.83778682725382,0.510914110417183,0,0,0,3.59497534571574,1.37250180845588,5.40313714085317,2.78118912307642,1.53429274398198,4.36354893575076,3.0825839982874,1.2220723662038,0,0,0.841767423545896,0.780722657776222,1.14951052216736,0.900310649026746,0.150704817835715,1.7009124787832,0.768682321709099,1.78033276663485,0.517406741478031,0.215567992932842,0.756424320671277,1.05570674498369,0.876782929710299,0.278047249225598,0.348252166522167,0.823128545631774,0.59710280045548,0,0,0,1.03562886267751,1.87620847984877,0.540186184383045,0.473489471170421,0.393528463494808,0.925602677324269,0.930135779001631,1.60964040839772,0.467061369468678,0.493679549740441,0.492502392237286,0.324275238183423,0.146199987425332,0.219550115291051,0,0.841159794256509,2.77842453424068,0,1.58670339998127,0.639864751605702,1.16118335930219,1.28867461322093,1.61346819698674,3.11329261382818,1.14135375667535,0.474529061544512,0.988193728344065,0.754005626400808,0.795825888164603,0.974820435595601,0.898819408654221,0.648414149624083,0.597423819763102,1.13800740571849,1.37098215131675,3.38123207019241,2.03651327845314,1.16371492300575,2.94570443539338,2.15004226222475,1.91893192373483,3.1399745568275,2.34454611451421,1.48226313543574,1.66845105716094,2.55526693647164,1.12431056192427,2.02860121388503,1.20588579876208,2.5462585178142,2.87696137450811,0.648540907100142,2.19649130550465,0,1.11642284300551,1.24815069245824,2.02063102357689,2.15276896226295,0.482443521363367,0.554259570499814,0.189491411770485,0.488894929326078,0.509235257325564,0.234690248288502,0.502518772325447,0.238043640886014,0.585400943573396,1.26108115284953,1.32878813789265,2.55127629851979,0.655453258862952,2.07221978239075,1.3018415272336,0,0,0.491764273019036,0.275936746304732,1.9266070798535,2.57865710502847,2.45902418065013,0.757412781613119,1.26203287766503,0.390438744296638,1.29254038639679,1.43381278771531,1.11399337041197,1.41538265394416,0.809621403349789,1.46127928955656,2.37172666767914,1.60660658210904,0.283880170416537,0.534196811001766,0.162886959353576,0.164970122972535,0,0.728341908464944,0.604647113929502,0.188605079755898,0,0.614870295887855,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,1.02131881726136,0.540183282093931,0.646793418913773,1.07168517515796,0.532020700926821,1.60531935841864,1.48094118541909,0.913394847343798,0.469343416127421,0.42366414172764,0.220528398054962,0,1.29171541356724,1.02531972377865,0.358117032009409,0.164140899745061,1.1659233465194,2.78137953015765,0,0.619160603889667,0,0,0.136694227721025,0,0,0,0,0,0.790839983952838,0.609958401380546,0.432021363287205,0.627264888043406,0.87345025498471,0.404593039154462,0.495920734352016,0,1.29614973291793,0.621339313086926,1.69107881605257,0.598066184175915,0.330916980914195,0.388902376688095,1.16243841129958,1.01373675294467,1.05621514781179,3.77592716047455,2.51662426621706,1.20792060413003,0,0,0,0.308132871494482,0.129920822977795,0.179026695667481,0,0.120195449519969,0,0,0.15241361331,0,0,0,0,0.906921534460845,7.5475224147182,7.80510552502439,5.20442310728643,0,0.750729901804728,0.183151624267265,0,0.501572104035363,1.12950368523413,4.14292712856459,2.29158205375759,3.43706364687375,1.37016503954128,1.5107877947794,1.35004500046361,0.900642406448441,2.71885445390523,1.03552062350364,1.45302286617847,2.39414924040619,1.19513524027894,1.70174701947806,2.09613162627982,2.20612210140017,1.33348036680969,1.85431551515005,1.28367683836726,2.02157769411038,0.50695859978048,2.26351609663291,1.77918864192777,1.85672941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| |||
|short_description=p3@Ddah1 | |||
}} |
Revision as of 04:39, 6 August 2015
Short description: | p3@Ddah1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ddah1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000029845_5end |
EntrezGene: | 69219 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.67e-16 | 43 |
ectodermal cell | 1.03e-15 | 44 |
neurectodermal cell | 1.03e-15 | 44 |
electrically responsive cell | 5.65e-13 | 39 |
electrically active cell | 5.65e-13 | 39 |
CNS neuron (sensu Vertebrata) | 8.29e-13 | 23 |
neuroblast (sensu Vertebrata) | 8.29e-13 | 23 |
neuron | 2.31e-11 | 33 |
neuronal stem cell | 2.31e-11 | 33 |
neuroblast | 2.31e-11 | 33 |
electrically signaling cell | 2.31e-11 | 33 |
embryonic cell | 9.20e-10 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.77e-19 | 75 |
central nervous system | 1.72e-17 | 73 |
regional part of nervous system | 5.48e-14 | 54 |
gray matter | 8.81e-14 | 34 |
ectoderm-derived structure | 6.37e-13 | 95 |
ectoderm | 6.37e-13 | 95 |
presumptive ectoderm | 6.37e-13 | 95 |
neural tube | 1.05e-12 | 52 |
neural rod | 1.05e-12 | 52 |
future spinal cord | 1.05e-12 | 52 |
neural keel | 1.05e-12 | 52 |
brain grey matter | 3.52e-10 | 29 |
regional part of telencephalon | 3.52e-10 | 29 |
telencephalon | 3.52e-10 | 29 |
neurectoderm | 7.47e-10 | 64 |
neural plate | 7.47e-10 | 64 |
presumptive neural plate | 7.47e-10 | 64 |
anterior neural tube | 2.41e-09 | 40 |
brain | 2.92e-09 | 47 |
future brain | 2.92e-09 | 47 |
regional part of brain | 4.47e-09 | 46 |
regional part of forebrain | 7.92e-09 | 39 |
forebrain | 7.92e-09 | 39 |
future forebrain | 7.92e-09 | 39 |
tube | 2.46e-08 | 114 |
ecto-epithelium | 9.37e-08 | 73 |
pre-chordal neural plate | 5.22e-07 | 49 |