FFCP PHASE1:Hg19::chr9:101984540..101984572,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10952 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16993 | |||
|TSSclassifier=strong | |||
|UniProt=P60468 | |||
|association_with_transcript=0bp_to_NM_006808,uc004azh.2_5end | |||
|description=CAGE_peak_1_at_SEC61B_5end | |||
|id=chr9:101984540..101984572,+ | |||
|ontology_enrichment_celltype=CL:0000144!1.32e-43!625;CL:0000012!5.73e-42!682;CL:0002371!6.91e-42!591;CL:0000548!2.24e-40!679;CL:0000004!2.24e-40!679;CL:0000255!2.24e-40!679;CL:0000003!8.88e-32!722;CL:0000034!1.25e-22!444;CL:0000048!1.26e-22!430;CL:0000723!2.09e-22!436;CL:0000222!1.81e-18!119;CL:0000183!2.13e-18!59;CL:0000055!5.39e-17!180;CL:0000680!1.53e-16!57;CL:0000056!1.53e-16!57;CL:0000355!1.53e-16!57;CL:0000192!2.80e-16!42;CL:0000514!2.80e-16!42;CL:0000220!5.09e-16!246;CL:0000187!6.65e-16!54;CL:0000393!6.97e-16!60;CL:0000211!6.97e-16!60;CL:0002321!1.55e-15!248;CL:0000063!1.61e-14!578;CL:0000359!3.51e-12!32;CL:0002320!8.91e-10!365;CL:0000134!1.02e-08!358;CL:0000219!8.45e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.93e-11;32!CL:0000192;4.85e-11;43!CL:0000187;3.48e-09;55!CL:0000393;1.06e-07;61!CL:0000211;1.06e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,7.37e-23,427;CL:0000034,7.45e-23,441;CL:0000723,1.23e-22,433;CL:0000222,7.92e-19,121;CL:0000680,2.14e-16,58;CL:0000056,2.14e-16,58;CL:0000355,2.14e-16,58;CL:0000192,4.60e-16,43;CL:0000514,4.60e-16,43;CL:0002321,6.98e-16,250;CL:0000393,9.34e-16,61;CL:0000211,9.34e-16,61;CL:0000187,9.36e-16,55;CL:0000359,3.51e-12,32;CL:0002320,6.51e-10,361;CL:0000134,7.59e-09,354;CL:0000219,6.74e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;4.85e-11;43!CL:0000355;7.41e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.18e-16!143;UBERON:0000486!1.38e-15!82;UBERON:0000914!3.92e-15!83;UBERON:0002329!3.92e-15!83;UBERON:0003077!3.92e-15!83;UBERON:0003059!3.92e-15!83;UBERON:0007282!3.92e-15!83;UBERON:0009618!3.92e-15!83;UBERON:0007285!3.92e-15!83;UBERON:0004290!7.77e-15!70;UBERON:0001134!2.15e-13!61;UBERON:0002036!2.15e-13!61;UBERON:0003082!2.15e-13!61;UBERON:0000490!8.75e-13!138;UBERON:0003914!1.61e-12!118;UBERON:0002385!4.53e-12!63;UBERON:0001015!4.53e-12!63;UBERON:0000383!4.53e-12!63;UBERON:0002100!7.74e-11!216;UBERON:0000926!7.86e-11!448;UBERON:0004120!7.86e-11!448;UBERON:0006603!7.86e-11!448;UBERON:0002049!1.40e-10!79;UBERON:0007798!1.40e-10!79;UBERON:0001637!4.40e-10!42;UBERON:0003509!4.40e-10!42;UBERON:0004572!4.40e-10!42;UBERON:0000055!2.01e-09!69;UBERON:0002204!2.10e-09!167;UBERON:0003104!1.43e-08!238;UBERON:0009142!1.43e-08!238;UBERON:0002384!1.50e-08!375;UBERON:0004872!1.90e-08!84;UBERON:0001981!3.82e-08!60;UBERON:0007500!3.82e-08!60;UBERON:0004537!3.82e-08!60;UBERON:0006965!3.82e-08!60;UBERON:0003081!1.19e-07!216;UBERON:0004573!1.23e-07!33;UBERON:0004571!1.23e-07!33;UBERON:0004535!8.08e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.33e-07;42!UBERON:0003509;7.33e-07;42!UBERON:0004572;7.33e-07;42!UBERON:0004573;7.70e-07;33!UBERON:0004571;7.70e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,7.60e-18,78;UBERON:0000486,1.64e-15,83;UBERON:0002329,9.56e-15,71;UBERON:0003059,9.56e-15,71;UBERON:0007282,9.56e-15,71;UBERON:0004290,9.56e-15,71;UBERON:0009618,9.56e-15,71;UBERON:0007524,2.84e-14,73;UBERON:0000490,2.93e-14,148;UBERON:0005256,4.03e-14,122;UBERON:0003077,6.45e-14,72;UBERON:0007285,6.45e-14,72;UBERON:0001134,2.68e-13,62;UBERON:0002036,2.68e-13,62;UBERON:0003082,2.68e-13,62;UBERON:0003104,1.28e-12,160;UBERON:0009142,1.28e-12,160;UBERON:0003914,1.54e-12,117;UBERON:0002385,5.40e-12,64;UBERON:0001015,5.40e-12,64;UBERON:0000383,5.40e-12,64;UBERON:0000926,2.46e-11,315;UBERON:0004120,2.46e-11,315;UBERON:0006603,2.46e-11,315;UBERON:0002100,1.24e-10,199;UBERON:0002049,1.48e-10,78;UBERON:0007798,1.48e-10,78;UBERON:0002204,2.96e-10,167;UBERON:0001637,4.40e-10,42;UBERON:0003509,4.40e-10,42;UBERON:0004572,4.40e-10,42;UBERON:0000055,2.11e-09,68;UBERON:0002384,1.14e-08,371;UBERON:0004872,2.06e-08,83;UBERON:0007500,4.01e-08,59;UBERON:0001981,4.01e-08,59;UBERON:0004537,4.01e-08,59;UBERON:0006965,4.01e-08,59;UBERON:0004573,1.23e-07,33;UBERON:0004571,1.23e-07,33;UBERON:0003081,5.95e-07,203;UBERON:0004535,8.92e-07,109 | |||
|phase1_expression=195.84929285366,140.664044196376,150.539303574497,234.171518146325,219.010936269371,265.190911326512,298.893856238606,185.725642787488,121.973688369325,231.481368184421,400.537870416173,190.69931786964,180.416613108262,115.226474605803,161.059124603767,200.352893642629,228.421226121087,243.923570189383,238.599138608558,181.849802779416,220.932748617526,187.445923443897,116.784282749471,111.278907584255,130.187717259811,96.6629582711583,98.8491096977347,95.712310077434,134.530582682325,69.4731210555955,115.492827993793,164.576399181728,130.120956912204,134.220705690544,86.2209942458757,111.745016735113,172.930658768225,71.4654077006122,64.9764009803259,67.4903807926299,101.881540779166,96.5203124736559,85.2575128869157,79.5328366124219,74.8194368503843,70.3493777444667,82.7447371384237,108.548322437762,118.617540052825,118.529265636726,111.17374663363,146.618982530923,121.005733938553,103.923034056996,112.403983873304,93.1799580735893,109.435366173196,147.19388231153,118.454466347539,120.990243207687,119.556042524421,88.0702971498532,89.3597186144911,92.4907708655946,154.681524189035,137.874609599947,150.722984256929,108.79067205617,102.73213492878,140.52118252421,124.106898039841,133.316504227498,176.902474579454,118.936726193623,108.853401582102,161.646815686958,114.687532400571,126.148589986865,68.6298255196532,155.616958082722,101.646422048735,110.877141335133,126.717296012152,83.5592075231061,112.078165986808,104.122174306228,70.8700897053742,100.00692455208,109.733448882287,109.716181771567,49.521528312522,65.7705652095451,61.1637165000366,166.535874009573,122.751375292956,160.664291712797,31.0801436779856,55.4145175476322,63.7364646898479,88.6088425570594,62.5770751936494,67.2295884143321,58.4480185223734,155.528997811702,105.763520783467,122.286709810159,73.1170432165542,125.27331069171,122.255786706286,195.02335485996,217.763814015248,119.978477494312,48.0448464645076,45.7494816033409,52.2677619024884,133.365096355035,132.594290786265,127.142154828573,74.1347697617143,96.5253205402013,116.543938240299,152.07232711174,79.2025126349085,74.3602210807171,69.9612068693137,83.1088154674499,125.63258352892,61.4900566835434,55.6275607229695,42.5783747415429,92.6466091993054,199.19815533198,182.971325998092,178.550941277976,117.313071088798,148.033142377962,138.379754786891,182.974711233791,102.381206988685,144.567567145592,139.569474466377,48.2002997831583,197.448046254558,159.06652595452,147.993611506536,132.686859822042,132.160212755752,124.015124638778,221.93402538269,185.728750664782,83.2814486866494,158.283165499527,114.209225028899,68.4022609728052,159.409785759764,141.685791599135,120.799090658277,129.466796343834,105.662580017953,89.370403608167,163.951532063423,179.424216949569,153.759096255347,149.271210620423,196.864493335268,92.961017143727,53.6625200576546,69.5938949386931,121.120143598048,105.368488212062,143.080562009648,54.0299711487859,77.5560528296651,217.174837966982,120.764184261962,133.088667759473,98.7772488866612,68.2671157382177,135.837990381971,154.186340039134,195.35066218536,191.660685120133,100.832375469524,125.954478385158,161.17343646987,152.114214783156,150.38191628928,121.847144553574,153.270597723687,132.919934419857,164.393548606981,105.10387628617,126.260896607143,128.372037325855,101.056314771172,138.557109927674,66.2318257336657,76.0321828660514,110.033783528958,189.313563283109,227.083332813931,143.422369088864,83.0786971949842,78.1320805665396,106.232584253163,194.619750332377,96.6030718769417,184.894458550834,62.9657621267906,162.090058113293,159.79665347431,82.825142519295,120.468406679735,99.9645295377041,183.883454055611,65.9915459063351,153.950468154694,87.0896521142195,125.003762356243,97.3109262049248,77.3920911686219,157.878537922712,166.508501648899,159.246943006557,146.191920636687,97.5135624322613,72.6963288532389,70.1082474420657,96.4409725817003,102.313461300171,114.553666297535,144.531034194029,162.707513623009,200.69117271618,167.143254836501,110.983934799643,189.854303679101,132.385309244585,122.055315616546,125.325735539411,132.68364919707,127.241595349965,116.974415221771,146.966125894579,132.057046029358,139.66321797154,163.870510926672,280.483547606892,301.272176294585,320.478990820481,239.56701581326,184.771516735394,168.3751234042,106.392606958931,78.2206469134202,137.940519480015,103.055517998699,142.750226637177,153.909856762207,80.4593588427622,258.365986111088,280.782392025486,167.424356749317,105.844459742245,176.817493519147,135.84882734317,162.970900426967,126.328757083773,104.306980530624,100.4428809651,103.903576568882,139.466542022986,101.812346167779,369.311305907901,171.341770762837,169.563016301894,97.2605556552932,120.32245054478,117.69848250372,61.090241499097,90.9540323356625,61.1617940845278,57.0715015531167,51.0019431042575,80.1343425967173,37.8168541302695,66.8139449097268,83.8254985511256,100.56528786385,107.222471650279,74.3148724839503,134.108776877051,156.073704642314,107.733941870976,142.974517628102,339.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| |||
|short_description=p1@SEC61B | |||
}} |
Revision as of 02:27, 23 January 2014
Short description: | p1@SEC61B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEC61B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_006808, uc004azh.2_5end |
EntrezGene: | SEC61B |
HGNC: | 16993 |
UniProt: | P60468 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 7.37e-23 | 427 |
stem cell | 7.45e-23 | 441 |
somatic stem cell | 1.23e-22 | 433 |
mesodermal cell | 7.92e-19 | 121 |
muscle precursor cell | 2.14e-16 | 58 |
myoblast | 2.14e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.14e-16 | 58 |
smooth muscle cell | 4.60e-16 | 43 |
smooth muscle myoblast | 4.60e-16 | 43 |
embryonic cell | 6.98e-16 | 250 |
electrically responsive cell | 9.34e-16 | 61 |
electrically active cell | 9.34e-16 | 61 |
muscle cell | 9.36e-16 | 55 |
vascular associated smooth muscle cell | 3.51e-12 | 32 |
connective tissue cell | 6.51e-10 | 361 |
mesenchymal cell | 7.59e-09 | 354 |
motile cell | 6.74e-07 | 386 |