FFCP PHASE1:Hg19::chrX:102983417..102983428,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=441509 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31715 | |||
|TSSclassifier=strong | |||
|UniProt=Q5JXX5 | |||
|association_with_transcript=123bp_to_ENST00000372617,ENST00000480725,NM_001024452,NM_001172285,uc010nou.2,uc011mse.1_5end | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_1_at_GLRA4_5end | |||
|id=chrX:102983417..102983428,- | |||
|ontology_enrichment_celltype=CL:0002322!5.18e-14!5;CL:0000708!7.32e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000632;3.66e-23;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000632,3.27e-23,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.34e-66;1!UBERON:0003056;3.66e-23;3!UBERON:0006238;2.32e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;7.48e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,7.48e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.09e-24!57;UBERON:0005068!5.09e-24!57;UBERON:0006241!5.09e-24!57;UBERON:0007135!5.09e-24!57;UBERON:0001017!6.90e-21!82;UBERON:0002616!2.03e-20!59;UBERON:0007023!3.55e-20!115;UBERON:0005743!1.09e-19!86;UBERON:0000073!3.01e-19!94;UBERON:0001016!3.01e-19!94;UBERON:0000955!1.04e-18!69;UBERON:0006238!1.04e-18!69;UBERON:0001893!2.19e-17!34;UBERON:0001869!9.77e-16!32;UBERON:0002791!3.76e-15!33;UBERON:0002020!1.39e-14!34;UBERON:0003528!1.39e-14!34;UBERON:0003075!1.96e-14!86;UBERON:0007284!1.96e-14!86;UBERON:0002780!5.13e-14!41;UBERON:0001890!5.13e-14!41;UBERON:0006240!5.13e-14!41;UBERON:0002240!7.86e-14!3;UBERON:0003080!1.26e-13!42;UBERON:0002346!1.35e-13!90;UBERON:0002619!3.10e-13!22;UBERON:0003076!8.33e-13!15;UBERON:0003057!8.33e-13!15;UBERON:0000956!1.60e-11!25;UBERON:0000203!1.60e-11!25;UBERON:0001950!1.65e-11!20;UBERON:0000153!2.29e-11!129;UBERON:0007811!2.29e-11!129;UBERON:0005162!6.63e-10!2;UBERON:0000122!6.63e-10!2;UBERON:0000033!9.66e-10!123;UBERON:0004121!2.36e-09!169;UBERON:0000924!5.14e-09!173;UBERON:0006601!5.14e-09!173;UBERON:0003056!1.30e-08!61;UBERON:0005174!1.80e-08!5;UBERON:0001137!1.80e-08!5;UBERON:0002298!2.77e-08!8;UBERON:0000349!4.31e-08!5;UBERON:0001872!5.25e-08!5;UBERON:0004732!8.22e-08!13;UBERON:0003210!7.32e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.34e-66;1!UBERON:0001785;3.34e-66;1!UBERON:0002464;3.34e-66;1!UBERON:0004904;3.34e-66;1!UBERON:0001021;3.34e-66;1!UBERON:0003714;5.96e-34;2!UBERON:0005162;5.96e-34;2!UBERON:0000122;5.96e-34;2!UBERON:0000010;1.16e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,4.66e-66,1;UBERON:0001785,4.66e-66,1;UBERON:0002464,4.66e-66,1;UBERON:0004904,4.66e-66,1;UBERON:0001021,4.66e-66,1;UBERON:0003902,4.66e-66,1;UBERON:0005425,4.66e-66,1;UBERON:0003714,7.05e-34,2;UBERON:0005162,7.05e-34,2;UBERON:0000122,7.05e-34,2;UBERON:0001781,1.03e-17,4;UBERON:0000966,2.74e-12,6;UBERON:0005388,2.74e-12,6;UBERON:0001802,2.74e-12,6;UBERON:0000010,1.21e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.132529768321485,0.232387885739037,0.207322110030741,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784917590417525,0,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.248385611765534,10.0994503503448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.345786262321089,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0.781078098613847,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0.633492505057185,0,0,0,0,0.227336094654718,0,0,0,0,0,0.322944549180031,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.855690109280065,0,0,0,0 | |||
|short_description=p1@GLRA4 | |||
}} |
Revision as of 06:25, 23 January 2014
Short description: | p1@GLRA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GLRA4_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | 123bp_to_ENST00000372617, ENST00000480725, NM_001024452, NM_001172285, uc010nou.2, uc011mse.1_5end |
EntrezGene: | GLRA4 |
HGNC: | 31715 |
UniProt: | Q5JXX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stellate cell | 3.27e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 4.66e-66 | 1 |
cranial nerve | 4.66e-66 | 1 |
nerve trunk | 4.66e-66 | 1 |
nerve connecting eye with brain | 4.66e-66 | 1 |
nerve | 4.66e-66 | 1 |
retinal neural layer | 4.66e-66 | 1 |
presumptive neural retina | 4.66e-66 | 1 |
neural tissue | 7.05e-34 | 2 |
multi cell component structure | 7.05e-34 | 2 |
neuron projection bundle | 7.05e-34 | 2 |
layer of retina | 1.03e-17 | 4 |
retina | 2.74e-12 | 6 |
photoreceptor array | 2.74e-12 | 6 |
posterior segment of eyeball | 2.74e-12 | 6 |
peripheral nervous system | 1.21e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 7.48e-07 | 11 |