FFCP PHASE1:Mm9::chr7:13623550..13623656,-: Difference between revisions
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{{FFCP|EntrezGene=22192|HGNC=|MCL_coexpression_id=735|UniProt=P61082,F6YXS3,G5E919,Q8R352|association_with_transcript=0bp_to_ENSMUST00000005714,ENSMUST00000156389,ENSMUST00000165394,NM_001168469,uc012ezf.1_5end|description=CAGE_peak_2_at_Ube2m_5end|id=chr7:13623550..13623656,-|ontology_enrichment_celltype=CL:0000221!2.45e-19!44;CL:0000133!2.45e-19!44;CL:0002319!7.55e-19!43;CL:0000540!5.17e-15!33;CL:0000047!5.17e-15!33;CL:0000031!5.17e-15!33;CL:0000404!5.17e-15!33;CL:0000117!4.62e-14!23;CL:0000337!4.62e-14!23;CL:0000055!3.11e-13!50;CL:0000393!1.44e-10!39;CL:0000211!1.44e-10!39|ontology_enrichment_celltype_v019_2=CL:0000221,2.45e-19,44;CL:0000133,2.45e-19,44;CL:0002319,7.55e-19,43;CL:0000540,5.17e-15,33;CL:0000047,5.17e-15,33;CL:0000031,5.17e-15,33;CL:0000404,5.17e-15,33;CL:0000117,4.62e-14,23;CL:0000337,4.62e-14,23;CL:0000393,1.44e-10,39;CL:0000211,1.44e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.19e-31!73;UBERON:0005743!2.19e-31!73;UBERON:0000073!2.72e-31!75;UBERON:0001016!2.72e-31!75;UBERON:0004121!1.94e-23!102;UBERON:0000924!1.94e-23!102;UBERON:0006601!1.94e-23!102;UBERON:0001049!2.40e-23!52;UBERON:0005068!2.40e-23!52;UBERON:0006241!2.40e-23!52;UBERON:0007135!2.40e-23!52;UBERON:0002346!5.55e-22!71;UBERON:0003075!5.55e-22!71;UBERON:0007284!5.55e-22!71;UBERON:0000955!1.42e-21!50;UBERON:0006238!1.42e-21!50;UBERON:0002616!4.25e-21!49;UBERON:0000033!1.65e-20!63;UBERON:0000153!2.53e-20!94;UBERON:0007811!4.65e-20!86;UBERON:0002020!2.62e-18!34;UBERON:0003080!1.05e-17!40;UBERON:0003056!1.05e-17!49;UBERON:0002780!1.49e-17!39;UBERON:0001890!1.49e-17!39;UBERON:0006240!1.49e-17!39;UBERON:0002791!5.46e-15!29;UBERON:0003528!5.46e-15!29;UBERON:0001893!5.46e-15!29;UBERON:0000956!6.99e-11!21;UBERON:0001869!6.99e-11!21;UBERON:0000203!6.99e-11!21;UBERON:0002619!8.55e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-31,73;UBERON:0001016,2.72e-31,75;UBERON:0000073,1.36e-24,54;UBERON:0004121,1.36e-24,95;UBERON:0000924,1.36e-24,95;UBERON:0006601,1.36e-24,95;UBERON:0002346,7.85e-24,64;UBERON:0003075,7.85e-24,64;UBERON:0007284,7.85e-24,64;UBERON:0001049,2.40e-23,52;UBERON:0005068,2.40e-23,52;UBERON:0006241,2.40e-23,52;UBERON:0007135,2.40e-23,52;UBERON:0000955,2.44e-20,47;UBERON:0006238,2.44e-20,47;UBERON:0010371,6.00e-20,73;UBERON:0002616,7.16e-20,46;UBERON:0002020,2.62e-18,34;UBERON:0003080,1.05e-17,40;UBERON:0003056,1.05e-17,49;UBERON:0002780,1.49e-17,39;UBERON:0001890,1.49e-17,39;UBERON:0006240,1.49e-17,39;UBERON:0010314,6.62e-17,92;UBERON:0003528,5.46e-15,29;UBERON:0002791,5.46e-15,29;UBERON:0001893,5.46e-15,29;UBERON:0000956,6.99e-11,21;UBERON:0001869,6.99e-11,21;UBERON:0000203,6.99e-11,21;UBERON:0002619,8.55e-09,17|phase1_expression=40.3575094704081,5.93258192986914,10.9199817453489,8.46899791659124,7.51343594919521,22.4958224361932,14.2503710763271,23.6295681898085,20.5551534341433,21.7680009479454,13.5262194898149,18.028507932946,20.2016861318823,26.7506431402132,9.99329285446988,9.92128810210147,7.69518065940961,13.249410945046,12.8887567589394,12.3072999021429,57.7443940125764,29.0922487018594,19.8511839745591,15.0392877425802,15.3704218315004,7.46501553349526,12.4920978886132,14.8675150553263,8.93110071444957,9.8291750606373,18.8470934057009,35.5617177137393,38.7490816178279,15.8481681015439,16.7533939455739,17.1221684719247,20.4169356262369,10.8818223991596,11.720030167857,8.37637990358077,5.88231488031014,4.09827290975067,9.71020706062307,10.5753327099485,11.0500855029271,11.1963518818626,84.4982651895882,54.2882639387312,50.5278220289285,44.1355870898623,28.4172435899486,53.1884488150395,25.1673909086605,39.1695556686126,45.3726628842326,20.3234954468398,19.4842739158355,17.0171790451556,92.8632555345554,85.1675476627973,87.4687336838527,37.9505875917428,47.1326241938904,38.2457379844595,50.4321844909157,48.3126478163348,50.9320187881288,80.6858441175265,58.2735621173644,63.8578088308897,55.9464397194676,106.833468167023,84.8135197254196,57.3256940325985,59.7117284443613,65.2645338493115,44.0463523997555,40.6045735110897,36.4047483817297,87.8362676283091,83.528218609,77.6160922129572,47.7402928292361,48.9603470727562,36.5187812186576,73.9517749538906,74.4603890579308,76.9829711258491,27.4886081799458,23.8050414336374,3.76823835312181,3.44169550792555,6.79971333707751,7.55584468292944,1.29955283489534,0.448026887097336,19.24088555805,15.1682987094471,20.0035223544209,20.8470348961101,45.2107377483144,12.8326477414318,10.1922095882658,0,16.8863011988747,18.7486300451573,22.7486000256652,16.8992141984209,7.76813650941515,16.6255195752604,30.3599321840738,26.4884966131563,22.8309342283498,21.8547828801303,19.6373140916627,19.35265506477,11.1237735480468,5.20557684911682,15.0383793831479,21.5149910430054,17.2256384399107,12.6067565815158,3.72783522436244,33.9625724533395,38.3287473468623,12.517395705221,17.3731930533584,14.9975682748352,18.2981126985213,31.7556155538224,35.6850470198529,91.9789857466167,43.9775530086459,61.6274252166097,34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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22192 | |||
|HGNC= | |||
|MCL_coexpression_id=735 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P61082,uniprot:F6YXS3,uniprot:G5E919,uniprot:Q8R352 | |||
|association_with_transcript=0bp_to_ENSMUST00000005714,ENSMUST00000156389,ENSMUST00000165394,NM_001168469,uc012ezf.1_5end | |||
|cluster_id=chr7:13623550..13623656,- | |||
|description=CAGE_peak_2_at_Ube2m_5end | |||
|id=chr7:13623550..13623656,- | |||
|ontology_enrichment_celltype=CL:0000221!2.45e-19!44;CL:0000133!2.45e-19!44;CL:0002319!7.55e-19!43;CL:0000540!5.17e-15!33;CL:0000047!5.17e-15!33;CL:0000031!5.17e-15!33;CL:0000404!5.17e-15!33;CL:0000117!4.62e-14!23;CL:0000337!4.62e-14!23;CL:0000055!3.11e-13!50;CL:0000393!1.44e-10!39;CL:0000211!1.44e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.45e-19,44;CL:0000133,2.45e-19,44;CL:0002319,7.55e-19,43;CL:0000540,5.17e-15,33;CL:0000047,5.17e-15,33;CL:0000031,5.17e-15,33;CL:0000404,5.17e-15,33;CL:0000117,4.62e-14,23;CL:0000337,4.62e-14,23;CL:0000393,1.44e-10,39;CL:0000211,1.44e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.19e-31!73;UBERON:0005743!2.19e-31!73;UBERON:0000073!2.72e-31!75;UBERON:0001016!2.72e-31!75;UBERON:0004121!1.94e-23!102;UBERON:0000924!1.94e-23!102;UBERON:0006601!1.94e-23!102;UBERON:0001049!2.40e-23!52;UBERON:0005068!2.40e-23!52;UBERON:0006241!2.40e-23!52;UBERON:0007135!2.40e-23!52;UBERON:0002346!5.55e-22!71;UBERON:0003075!5.55e-22!71;UBERON:0007284!5.55e-22!71;UBERON:0000955!1.42e-21!50;UBERON:0006238!1.42e-21!50;UBERON:0002616!4.25e-21!49;UBERON:0000033!1.65e-20!63;UBERON:0000153!2.53e-20!94;UBERON:0007811!4.65e-20!86;UBERON:0002020!2.62e-18!34;UBERON:0003080!1.05e-17!40;UBERON:0003056!1.05e-17!49;UBERON:0002780!1.49e-17!39;UBERON:0001890!1.49e-17!39;UBERON:0006240!1.49e-17!39;UBERON:0002791!5.46e-15!29;UBERON:0003528!5.46e-15!29;UBERON:0001893!5.46e-15!29;UBERON:0000956!6.99e-11!21;UBERON:0001869!6.99e-11!21;UBERON:0000203!6.99e-11!21;UBERON:0002619!8.55e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-31,73;UBERON:0001016,2.72e-31,75;UBERON:0000073,1.36e-24,54;UBERON:0004121,1.36e-24,95;UBERON:0000924,1.36e-24,95;UBERON:0006601,1.36e-24,95;UBERON:0002346,7.85e-24,64;UBERON:0003075,7.85e-24,64;UBERON:0007284,7.85e-24,64;UBERON:0001049,2.40e-23,52;UBERON:0005068,2.40e-23,52;UBERON:0006241,2.40e-23,52;UBERON:0007135,2.40e-23,52;UBERON:0000955,2.44e-20,47;UBERON:0006238,2.44e-20,47;UBERON:0010371,6.00e-20,73;UBERON:0002616,7.16e-20,46;UBERON:0002020,2.62e-18,34;UBERON:0003080,1.05e-17,40;UBERON:0003056,1.05e-17,49;UBERON:0002780,1.49e-17,39;UBERON:0001890,1.49e-17,39;UBERON:0006240,1.49e-17,39;UBERON:0010314,6.62e-17,92;UBERON:0003528,5.46e-15,29;UBERON:0002791,5.46e-15,29;UBERON:0001893,5.46e-15,29;UBERON:0000956,6.99e-11,21;UBERON:0001869,6.99e-11,21;UBERON:0000203,6.99e-11,21;UBERON:0002619,8.55e-09,17 | |||
|phase1_expression=40.3575094704081,5.93258192986914,10.9199817453489,8.46899791659124,7.51343594919521,22.4958224361932,14.2503710763271,23.6295681898085,20.5551534341433,21.7680009479454,13.5262194898149,18.028507932946,20.2016861318823,26.7506431402132,9.99329285446988,9.92128810210147,7.69518065940961,13.249410945046,12.8887567589394,12.3072999021429,57.7443940125764,29.0922487018594,19.8511839745591,15.0392877425802,15.3704218315004,7.46501553349526,12.4920978886132,14.8675150553263,8.93110071444957,9.8291750606373,18.8470934057009,35.5617177137393,38.7490816178279,15.8481681015439,16.7533939455739,17.1221684719247,20.4169356262369,10.8818223991596,11.720030167857,8.37637990358077,5.88231488031014,4.09827290975067,9.71020706062307,10.5753327099485,11.0500855029271,11.1963518818626,84.4982651895882,54.2882639387312,50.5278220289285,44.1355870898623,28.4172435899486,53.1884488150395,25.1673909086605,39.1695556686126,45.3726628842326,20.3234954468398,19.4842739158355,17.0171790451556,92.8632555345554,85.1675476627973,87.4687336838527,37.9505875917428,47.1326241938904,38.2457379844595,50.4321844909157,48.3126478163348,50.9320187881288,80.6858441175265,58.2735621173644,63.8578088308897,55.9464397194676,106.833468167023,84.8135197254196,57.3256940325985,59.7117284443613,65.2645338493115,44.0463523997555,40.6045735110897,36.4047483817297,87.8362676283091,83.528218609,77.6160922129572,47.7402928292361,48.9603470727562,36.5187812186576,73.9517749538906,74.4603890579308,76.9829711258491,27.4886081799458,23.8050414336374,3.76823835312181,3.44169550792555,6.79971333707751,7.55584468292944,1.29955283489534,0.448026887097336,19.24088555805,15.1682987094471,20.0035223544209,20.8470348961101,45.2107377483144,12.8326477414318,10.1922095882658,0,16.8863011988747,18.7486300451573,22.7486000256652,16.8992141984209,7.76813650941515,16.6255195752604,30.3599321840738,26.4884966131563,22.8309342283498,21.8547828801303,19.6373140916627,19.35265506477,11.1237735480468,5.20557684911682,15.0383793831479,21.5149910430054,17.2256384399107,12.6067565815158,3.72783522436244,33.9625724533395,38.3287473468623,12.517395705221,17.3731930533584,14.9975682748352,18.2981126985213,31.7556155538224,35.6850470198529,91.9789857466167,43.9775530086459,61.6274252166097,34.9083914860061,43.3184172390913,36.3566528945629,18.9098595327341,19.9650979162603,6.10281382070775,32.2698698547505,35.4049240827548,36.9127366100966,34.5114032843788,37.556147531533,34.2063633160549,37.0121812010929,17.3331258395141,33.8441748904562,28.1768059450051,30.791446728691,37.2632745126877,25.0242524303038,26.4671646556847,23.8707278233214,29.6561057559555,11.2354109970118,15.4408744268829,25.5747149456033,21.7482061162277,18.7620847984877,25.2086886045421,24.3847077652767,25.3825858954151,21.7516629171203,24.6485981435432,24.4128795273653,21.6015883379264,22.8738191379738,17.5659186564632,14.9977297659833,14.7661987299586,13.173006917463,14.2258803885994,38.4830605872353,68.5344718446034,4.29544417878937,9.25576983322405,25.1680135631576,20.2045904518582,26.288962109707,21.3784536100743,22.0154263406422,23.9684288901825,12.3377556001573,23.3872515708095,19.604146286421,17.7071260116624,15.5971269695296,8.08937467788799,9.72621224436124,9.75792238946399,33.3815505677424,21.3644718580193,24.7957018480777,19.9578301288408,24.6319658702885,27.6335130367855,22.5754437533599,19.0417090893687,13.1878931386755,15.9182341459123,5.92905254174298,19.520877368783,12.579775687245,12.5922782935518,12.5773275260872,14.7118067448974,14.7682994033223,11.5078454980324,13.619359049103,11.5315793538994,8.62609239164127,16.7463426450827,12.4815069245824,9.34541848404313,4.66433275156972,8.68398338454061,14.041242452662,28.9921860008842,21.1854469374634,20.8786455503481,22.0608833391192,22.4458384972033,21.6619713206272,23.4160377429359,18.4433118604243,20.3747514476873,20.4102103881583,10.8149787712387,16.2323882953942,11.1379775107764,25.6345182696763,16.3171705145613,7.86822836830458,12.6930903300177,26.4908473479857,36.6872579033596,23.7705670796179,16.1581393410799,28.0802315280468,28.5020283336546,31.020969273523,34.8894445010726,32.0830090678648,30.5722653251939,36.4329631507405,28.3488182173973,24.903130010631,43.378377716944,16.4650498841592,36.3253831481201,38.2784354480904,19.7964147567043,5.30980553359851,28.6481150662878,24.4882081141448,18.8605079755898,21.8523400731772,22.4427657999067,25.5844010236539,17.0860852854428,18.5378636760055,15.485801138855,11.5960469432499,10.3135543248187,16.3411010761818,32.5910580196672,51.2260387779708,44.3677662515396,34.5813455602433,41.9166721364866,40.808157109326,52.0635062985965,9.38686832254841,11.2270997557825,21.6117830093863,9.0687439117814,24.8655217111695,17.7319999288778,17.0702451924485,14.2802582778203,12.8251568117134,27.4429446975554,13.8405413446261,29.719708986704,16.4823129359043,13.1857919903284,11.072232445403,15.328137604837,13.7682528295023,16.2343684695443,13.9581973542468,5.72802370809068,31.6335993581135,23.78837765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| |||
|short_description=p2@Ube2m | |||
}} |
Revision as of 08:47, 4 August 2015
Short description: | p2@Ube2m |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ube2m_5end |
Coexpression cluster: | MCL_coexpression_mm9:735 |
Association with transcript: | 0bp_to_ENSMUST00000005714, ENSMUST00000156389, ENSMUST00000165394, NM_001168469, uc012ezf.1_5end |
EntrezGene: | 22192 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.45e-19 | 44 |
neurectodermal cell | 2.45e-19 | 44 |
neural cell | 7.55e-19 | 43 |
neuron | 5.17e-15 | 33 |
neuronal stem cell | 5.17e-15 | 33 |
neuroblast | 5.17e-15 | 33 |
electrically signaling cell | 5.17e-15 | 33 |
CNS neuron (sensu Vertebrata) | 4.62e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.62e-14 | 23 |
electrically responsive cell | 1.44e-10 | 39 |
electrically active cell | 1.44e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.19e-31 | 73 |
nervous system | 2.72e-31 | 75 |
regional part of nervous system | 1.36e-24 | 54 |
ectoderm-derived structure | 1.36e-24 | 95 |
ectoderm | 1.36e-24 | 95 |
presumptive ectoderm | 1.36e-24 | 95 |
neurectoderm | 7.85e-24 | 64 |
neural plate | 7.85e-24 | 64 |
presumptive neural plate | 7.85e-24 | 64 |
neural tube | 2.40e-23 | 52 |
neural rod | 2.40e-23 | 52 |
future spinal cord | 2.40e-23 | 52 |
neural keel | 2.40e-23 | 52 |
brain | 2.44e-20 | 47 |
future brain | 2.44e-20 | 47 |
ecto-epithelium | 6.00e-20 | 73 |
regional part of brain | 7.16e-20 | 46 |
gray matter | 2.62e-18 | 34 |
anterior neural tube | 1.05e-17 | 40 |
pre-chordal neural plate | 1.05e-17 | 49 |
regional part of forebrain | 1.49e-17 | 39 |
forebrain | 1.49e-17 | 39 |
future forebrain | 1.49e-17 | 39 |
structure with developmental contribution from neural crest | 6.62e-17 | 92 |
brain grey matter | 5.46e-15 | 29 |
regional part of telencephalon | 5.46e-15 | 29 |
telencephalon | 5.46e-15 | 29 |
cerebral cortex | 6.99e-11 | 21 |
cerebral hemisphere | 6.99e-11 | 21 |
pallium | 6.99e-11 | 21 |
regional part of cerebral cortex | 8.55e-09 | 17 |