Personal tools

MCL coexpression mm9:1153: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417608273178218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327063587524422,0,0,0,0,0,0,0,0,0,0,0.330786781096625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0.096497738357694,0.177665042710266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142359732304287,0.281434656022989,0.570446158054711,0.848313293115739,0.852659919321066,1.03134284850153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108524491213051,0,0.0655375003561515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18366460547338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0352754493378881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417608273178218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327063587524422,0,0,0,0,0,0,0,0,0,0,0.330786781096625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0.096497738357694,0.177665042710266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142359732304287,0.281434656022989,0.570446158054711,0.848313293115739,0.852659919321066,1.03134284850153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108524491213051,0,0.0655375003561515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18366460547338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0352754493378881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0004194;pepsin A activity;0.00613597764751;16541!GO:0004190;aspartic-type endopeptidase activity;0.00690297485344875;16541!
|gostat_on_MCL_coexpression=GO:0004194;pepsin A activity;0.00613597764751;16541!GO:0004190;aspartic-type endopeptidase activity;0.00690297485344875;16541!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002113!3.15e-31!14;UBERON:0003918!3.15e-31!14;UBERON:0011143!3.15e-31!14;UBERON:0005095!3.15e-31!14;UBERON:0007687!3.15e-31!14;UBERON:0006554!4.44e-24!18;UBERON:0001008!9.24e-23!19;UBERON:0000489!1.69e-20!21;UBERON:0001301!1.18e-16!3;UBERON:0006555!1.18e-16!3;UBERON:0005103!1.18e-16!3;UBERON:0000083!1.18e-16!3;UBERON:0009201!1.18e-16!3;UBERON:0004819!1.18e-16!3;UBERON:0006553!1.18e-16!3;UBERON:0003074!1.18e-16!3;UBERON:0003060!1.18e-16!3;UBERON:0000080!1.20e-12!4;UBERON:0005904!1.20e-12!4;UBERON:0006947!1.20e-12!4;UBERON:0002120!1.20e-12!4;UBERON:0004054!1.20e-12!4;UBERON:0004875!1.20e-12!4;UBERON:0004876!1.20e-12!4;UBERON:0005721!1.20e-12!4;UBERON:0005754!1.20e-12!4;UBERON:0007297!1.20e-12!4;UBERON:0001343!1.54e-11!2;UBERON:0004910!1.54e-11!2;UBERON:0004909!1.54e-11!2;UBERON:0005154!1.54e-11!2;UBERON:0005295!1.54e-11!2;UBERON:0005297!1.54e-11!2;UBERON:0005294!1.54e-11!2;UBERON:0010141!1.54e-11!2;UBERON:0005891!1.54e-11!2;UBERON:0004175!4.82e-10!9;UBERON:0003103!1.82e-09!43;UBERON:0005172!3.61e-08!49;UBERON:0005173!3.61e-08!49;UBERON:0002417!3.61e-08!49;UBERON:0000916!3.61e-08!49;UBERON:0000992!5.45e-08!3;UBERON:0004871!5.45e-08!3;UBERON:0003133!8.39e-08!24;UBERON:0000058!1.87e-07!7;UBERON:0006834!2.75e-07!1;UBERON:0005156!3.59e-07!26;UBERON:0000990!3.59e-07!26;UBERON:0003134!9.24e-07!8
}}
}}

Revision as of 16:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:86806752..86806765,-p1@uc007zty.1
Mm9::chr6:38097369..38097379,-p11@D630045J12Rik
Mm9::chr6:38097380..38097407,-p6@D630045J12Rik
Mm9::chr6:38097421..38097440,-p7@D630045J12Rik
Mm9::chr6:48852985..48853005,-p@chr6:48852985..48853005
-
Mm9::chr7:51827954..51827987,+p1@Napsa
Mm9::chr7:51840408..51840435,+p@chr7:51840408..51840435
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004194pepsin A activity0.00613597764751
GO:0004190aspartic-type endopeptidase activity0.00690297485344875



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney3.15e-3114
kidney mesenchyme3.15e-3114
upper urinary tract3.15e-3114
kidney rudiment3.15e-3114
kidney field3.15e-3114
urinary system structure4.44e-2418
renal system9.24e-2319
cavitated compound organ1.69e-2021
epididymis1.18e-163
excretory tube1.18e-163
mesonephric epithelium1.18e-163
mesonephric tubule1.18e-163
nephric duct1.18e-163
kidney epithelium1.18e-163
renal duct1.18e-163
mesonephric duct1.18e-163
pronephric duct1.18e-163
mesonephros1.20e-124
duct of male reproductive system1.20e-124
male genital duct1.20e-124
pronephros1.20e-124
internal male genitalia1.20e-124
nephrogenic cord1.20e-124
urogenital ridge1.20e-124
pronephric mesoderm1.20e-124
rostral part of nephrogenic cord1.20e-124
presumptive pronephric mesoderm1.20e-124
seminiferous tubule of testis1.54e-112
epithelium of male gonad1.54e-112
epithelium of gonad1.54e-112
epithelial cord1.54e-112
sex cord1.54e-112
testis sex cord1.54e-112
genital ridge1.54e-112
primitive sex cord of indifferent gonad1.54e-112
coelomic epithelium1.54e-112
internal genitalia4.82e-109
compound organ1.82e-0943
abdomen element3.61e-0849
abdominal segment element3.61e-0849
abdominal segment of trunk3.61e-0849
abdomen3.61e-0849
female gonad5.45e-083
somatic layer of lateral plate mesoderm5.45e-083
reproductive organ8.39e-0824
duct1.87e-077
uterus or analog2.75e-071
reproductive structure3.59e-0726
reproductive system3.59e-0726
female reproductive organ9.24e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1153&oldid=2153236"