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MCL coexpression mm9:1465: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007100!5.05e-18!18;UBERON:0000948!5.05e-18!18;UBERON:0005498!5.05e-18!18;UBERON:0004140!5.05e-18!18;UBERON:0009881!5.05e-18!18;UBERON:0004141!5.05e-18!18;UBERON:0003084!5.05e-18!18;UBERON:0007005!5.05e-18!18;UBERON:0004139!5.05e-18!18;UBERON:0004291!5.05e-18!18;UBERON:0004535!3.65e-14!23;UBERON:0001009!3.65e-14!23;UBERON:0002048!3.39e-13!14;UBERON:0000117!3.39e-13!14;UBERON:0000171!3.39e-13!14;UBERON:0000170!3.39e-13!14;UBERON:0005597!3.39e-13!14;UBERON:0000118!3.39e-13!14;UBERON:0005153!1.84e-11!17;UBERON:0005178!5.01e-10!17;UBERON:0005181!5.01e-10!17;UBERON:0002224!5.01e-10!17;UBERON:0000915!5.01e-10!17;UBERON:0008947!5.01e-10!17;UBERON:0003258!5.01e-10!17;UBERON:0005157!5.29e-09!20;UBERON:0002102!8.01e-09!7;UBERON:0004710!8.01e-09!7;UBERON:0005419!8.01e-09!7;UBERON:0005417!8.01e-09!7;UBERON:0005729!8.01e-09!7;UBERON:0000026!6.42e-08!12;UBERON:0004708!6.42e-08!12;UBERON:0002101!6.42e-08!12;UBERON:0004357!6.42e-08!12;UBERON:0004347!6.42e-08!12;UBERON:0005732!6.42e-08!12;UBERON:0005733!6.42e-08!12;UBERON:0004872!6.94e-08!33;UBERON:0010708!1.86e-07!8;UBERON:0003102!2.54e-07!22;UBERON:0001048!3.82e-07!134;UBERON:0010707!4.43e-07!13
}}
}}

Revision as of 16:56, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:120285104..120285113,+p5@Tbx5
Mm9::chr5:120285124..120285127,+p8@Tbx5
Mm9::chr5:120285130..120285141,+p3@Tbx5
Mm9::chr5:120285144..120285160,+p1@Tbx5
Mm9::chr5:120285161..120285176,+p2@Tbx5
Mm9::chr5:120285179..120285185,+p@chr5:120285179..120285185
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primary circulatory organ5.05e-1818
heart5.05e-1818
primitive heart tube5.05e-1818
primary heart field5.05e-1818
anterior lateral plate mesoderm5.05e-1818
heart tube5.05e-1818
heart primordium5.05e-1818
cardiac mesoderm5.05e-1818
cardiogenic plate5.05e-1818
heart rudiment5.05e-1818
cardiovascular system3.65e-1423
circulatory system3.65e-1423
lung3.39e-1314
respiratory tube3.39e-1314
respiration organ3.39e-1314
pair of lungs3.39e-1314
lung primordium3.39e-1314
lung bud3.39e-1314
epithelial bud1.84e-1117
thoracic cavity element5.01e-1017
thoracic segment organ5.01e-1017
thoracic cavity5.01e-1017
thoracic segment of trunk5.01e-1017
respiratory primordium5.01e-1017
endoderm of foregut5.01e-1017
epithelial fold5.29e-0920
forelimb8.01e-097
pectoral appendage8.01e-097
pectoral appendage bud8.01e-097
forelimb bud8.01e-097
forelimb/pectoral fin field8.01e-097
appendage6.42e-0812
paired limb/fin6.42e-0812
limb6.42e-0812
paired limb/fin bud6.42e-0812
limb bud6.42e-0812
limb/fin field6.42e-0812
limb field6.42e-0812
splanchnic layer of lateral plate mesoderm6.94e-0833
pectoral complex1.86e-078
surface structure2.54e-0722
primordium3.82e-07134
appendage girdle complex4.43e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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