FFCP PHASE1:Mm9::chr6:18798452..18798538,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr6:18798452..18798538,- | |id=chr6:18798452..18798538,- | ||
|ontology_enrichment_celltype=CL:0000540!4.19e-10!33;CL:0000047!4.19e-10!33;CL:0000031!4.19e-10!33;CL:0000404!4.19e-10!33;CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23;CL:0000221!3.46e-07!44;CL:0000133!3.46e-07!44;CL:0002319!4.86e-07!43 | |ontology_enrichment_celltype=CL:0000540!4.19e-10!33;CL:0000047!4.19e-10!33;CL:0000031!4.19e-10!33;CL:0000404!4.19e-10!33;CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23;CL:0000221!3.46e-07!44;CL:0000133!3.46e-07!44;CL:0002319!4.86e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.19e-10,33;CL:0000047,4.19e-10,33;CL:0000031,4.19e-10,33;CL:0000404,4.19e-10,33;CL:0000117,1.08e-09,23;CL:0000337,1.08e-09,23;CL:0000221,3.46e-07,44;CL:0000133,3.46e-07,44;CL:0002319,4.85e-07,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.04e-18!94;UBERON:0007811!2.21e-17!86;UBERON:0000033!5.02e-15!63;UBERON:0003056!8.45e-13!49;UBERON:0001017!8.78e-13!73;UBERON:0005743!8.78e-13!73;UBERON:0000073!4.52e-12!75;UBERON:0001016!4.52e-12!75;UBERON:0002616!4.92e-11!49;UBERON:0000955!6.32e-11!50;UBERON:0006238!6.32e-11!50;UBERON:0001049!6.90e-11!52;UBERON:0005068!6.90e-11!52;UBERON:0006241!6.90e-11!52;UBERON:0007135!6.90e-11!52;UBERON:0004121!1.78e-10!102;UBERON:0000924!1.78e-10!102;UBERON:0006601!1.78e-10!102;UBERON:0002346!2.73e-10!71;UBERON:0003075!2.73e-10!71;UBERON:0007284!2.73e-10!71;UBERON:0003080!1.13e-09!40;UBERON:0002780!2.97e-09!39;UBERON:0001890!2.97e-09!39;UBERON:0006240!2.97e-09!39;UBERON:0002020!2.51e-07!34;UBERON:0002791!9.21e-07!29;UBERON:0003528!9.21e-07!29;UBERON:0001893!9.21e-07!29 | |ontology_enrichment_uberon=UBERON:0000153!1.04e-18!94;UBERON:0007811!2.21e-17!86;UBERON:0000033!5.02e-15!63;UBERON:0003056!8.45e-13!49;UBERON:0001017!8.78e-13!73;UBERON:0005743!8.78e-13!73;UBERON:0000073!4.52e-12!75;UBERON:0001016!4.52e-12!75;UBERON:0002616!4.92e-11!49;UBERON:0000955!6.32e-11!50;UBERON:0006238!6.32e-11!50;UBERON:0001049!6.90e-11!52;UBERON:0005068!6.90e-11!52;UBERON:0006241!6.90e-11!52;UBERON:0007135!6.90e-11!52;UBERON:0004121!1.78e-10!102;UBERON:0000924!1.78e-10!102;UBERON:0006601!1.78e-10!102;UBERON:0002346!2.73e-10!71;UBERON:0003075!2.73e-10!71;UBERON:0007284!2.73e-10!71;UBERON:0003080!1.13e-09!40;UBERON:0002780!2.97e-09!39;UBERON:0001890!2.97e-09!39;UBERON:0006240!2.97e-09!39;UBERON:0002020!2.51e-07!34;UBERON:0002791!9.21e-07!29;UBERON:0003528!9.21e-07!29;UBERON:0001893!9.21e-07!29 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,8.08e-14,64;UBERON:0003075,8.08e-14,64;UBERON:0007284,8.08e-14,64;UBERON:0004121,2.94e-13,95;UBERON:0000924,2.94e-13,95;UBERON:0006601,2.94e-13,95;UBERON:0003056,8.44e-13,49;UBERON:0001017,8.78e-13,73;UBERON:0001016,4.52e-12,75;UBERON:0000073,1.12e-11,54;UBERON:0010371,1.27e-11,73;UBERON:0001049,6.90e-11,52;UBERON:0005068,6.90e-11,52;UBERON:0006241,6.90e-11,52;UBERON:0007135,6.90e-11,52;UBERON:0002616,9.29e-10,46;UBERON:0003080,1.13e-09,40;UBERON:0000955,1.17e-09,47;UBERON:0006238,1.17e-09,47;UBERON:0010314,2.27e-09,92;UBERON:0002780,2.97e-09,39;UBERON:0001890,2.97e-09,39;UBERON:0006240,2.97e-09,39;UBERON:0002020,2.51e-07,34;UBERON:0000153,4.21e-07,43;UBERON:0003528,9.21e-07,29;UBERON:0002791,9.21e-07,29;UBERON:0001893,9.21e-07,29 | |||
|phase1_expression=9.12848428497326,0.697950815278722,0.909998478779072,1.81478526784098,3.50627010962443,3.52546471014969,2.10251376535973,16.7860320474049,4.646027831005,3.27690336850791,6.33506482434368,4.3874687447435,13.8672591244277,12.6759583507546,4.66353666541928,6.2767332890846,4.89693314689703,7.25562980323947,7.26706498110415,6.36584477697045,11.9911039113008,6.45391182805754,4.17919662622297,3.51983330145495,4.5881856213434,1.14846392823004,0.430761996159075,2.80112602491656,3.04037471130198,2.77233142735924,3.99114919179548,3.17515336729816,6.1506478758457,15.8481681015439,6.35473563452804,4.3221007793208,4.90006455029686,2.92972141515835,2.3440060335714,3.66466620781659,8.2352408324342,4.09827290975067,3.88408282424923,4.15459499319405,3.85232338634155,3.85448179539531,4.69434806608824,9.3750817243592,6.15121311656521,6.9994763666742,5.31948402176378,7.18762821824858,5.70460860596304,17.4086914082723,8.73843877770406,3.60163210450326,2.57880095944881,0.515672092277442,11.9366711907163,11.1088105647127,11.4089652631112,3.72728985276045,3.55717918444456,2.2497492932035,1.97773272513395,1.4209602298922,3.29560121570245,3.45796474789399,23.5375419940244,22.680997639724,20.4015212510841,7.14127461009509,11.7060326704355,16.5362578940188,21.3735400370667,16.5459381589804,16.5173821499083,11.1087984134113,12.595735727012,14.7712642257817,15.4614117688072,11.4600941522487,15.355064945076,7.87867654044352,9.47349136216223,4.71405736757868,10.8202477407318,12.3023634244698,4.08921443999194,5.59229544790213,5.2175607966302,0.860423876981386,0,1.61910957491345,3.24888208723835,2.24013443548668,5.19644354487482,2.89731548382698,1.81850203222008,2.12003744706204,8.73229202615419,1.28326477414318,5.09610479413291,0,2.38140145112336,1.26679932737549,1.51657333504435,4.11061966988616,10.0985774622397,3.11728492036132,4.3371331691534,4.26251669636998,3.92046345335299,4.82312449768392,3.76283862834255,3.26733137457156,3.95511948374998,5.92857363371638,1.76922110389975,5.3383060482645,5.07935492458905,4.363877278217,3.72783522436244,4.68449275218475,6.28340120440365,4.08731288333746,8.02761334189666,6.59893004092748,4.57452817463033,12.4326230706003,9.60751265919116,12.942398267625,9.56033761057521,10.9957646652042,9.97382613885888,10.058958310201,3.1570202793598,5.84712761867437,8.33985102831127,7.99679052368601,12.6216829673823,11.7250073261071,15.6654052930654,14.4676625122286,10.5456573684558,11.5302348256365,11.056803498048,9.05461797586555,7.76044774558232,9.8335161687266,12.8444320639683,7.67185063496512,7.50727572909114,7.66154766348766,7.81972118350185,6.17006227137329,4.21327912387941,2.83082697826187,1.98914449576915,6.83515049367156,5.8631514995274,5.04173772090842,7.10234206755631,6.09969118416952,6.32495162838251,8.13868806626427,5.36546802799238,5.60473643362414,6.7469538464527,8.53670813211295,9.48505071686512,8.47959927066927,9.00155472693308,10.0654814070279,8.20130799400096,20.6838270882362,5.94753809370836,4.49565963328025,8.10495352033889,7.89604684325491,7.98978260196979,6.45387278794696,4.22518283305254,2.66315876557583,2.37264530772256,3.62337700392824,3.51869292320377,4.17808591286417,5.65395852645448,4.49409704327111,4.97117514711797,4.18196673834171,6.63837653335786,6.96915926919346,7.88954149711563,8.96065842519383,5.62462212786115,6.8031745293609,9.92813632850839,9.88987991463334,10.047918581848,8.02081565491703,2.07516838961004,2.8363667971736,5.89676985339609,2.9232074610031,4.86864291332407,4.58236603529592,3.8193877767213,5.75392274901621,6.32327384422638,3.84385978463314,5.75072826109418,6.32639611036456,4.68056509671841,5.05157755894223,2.51156378930677,3.85954817090694,4.98833613449833,4.54779388249163,7.65935389277522,5.7713329163564,7.97946844180907,8.5428191295326,7.85544014923845,8.39074685788535,5.2019597555043,4.20782910332672,5.42146213435456,6.39066927391378,5.69860440157455,5.64131328467895,0,1.63171705145613,0.983528546038072,3.03530420935206,14.2890025089135,14.417037450841,1.80328439914343,9.59389523376617,5.04813151066011,9.76096860741596,6.67812532971677,7.64700153448166,11.1399337041197,11.3230612315533,7.2865926301481,10.2289550268959,8.30104333687699,6.74774764485795,7.38088443082997,7.12262414669021,5.37526965866801,4.61916344323099,2.65490276679926,7.28341908464944,4.53485335447127,5.28094223316515,2.95301892880773,6.7635732547664,4.9101375701962,7.27067458955011,4.9909632973861,6.0046984007805,2.10837217149998,2.06271086496374,10.2131881726136,11.5239100180039,13.5826617971892,13.0745591369271,17.3793428969428,8.38333442729732,11.6829804627506,4.56697423671899,2.58138878870081,2.1183207086382,1.98475558249466,5.27636009412736,6.94297034792394,6.93598636673792,4.77489376012546,5.0883678920969,4.66369338607761,15.3903000668723,4.61351378154202,4.74689796315412,5.37064129372164,6.2161590811548,5.60446333656203,4.11800711771741,10.7086410896129,9.93655311497972,8.01559848065658,2.86401185404534,7.90839983952838,8.53941761932765,7.23635783506068,6.06356058441959,5.45906409365444,5.52943820177765,4.79390043206948,2.87931536182433,3.49960427887841,9.32008969630389,53.5508291749981,7.32631075615496,5.62558867554132,6.41688921535357,4.64975364519832,4.89972763923257,3.16864544343536,5.85919731797776,5.13810787685983,27.5405897741647,25.0586105444343,20.5407228408316,6.08175645870493,6.47079030138412,8.18501184760109,9.30938817470904,10.3314304486258,11.8993495024769,13.4397469728865,17.9720280907703,17.52756553065,13.3090564380629,13.2542717806063,16.644648603777,24.3103956537663,10.6563280299149,1.77588762699252,2.06341870201794,0.671538465456314,6.18206700903009,3.19060208267009,6.77661009788881,4.07299920250225,2.00628841614145,8.471277639256,7.82552902062201,4.58316410751517,3.78077001156113,12.3314853558716,12.0863023582352,6.07520250208625,8.55610286126019,6.34399372577886,6.21312374102184,13.492355185943,16.7590446828433,10.0732827394939,8.99494853152688,6.28839487883947,11.0306105070008,8.22312892865976,8.03536723231687,10.9112531261217,9.8551912587881,11.4065684950608,9.61994341068989,12.2670374785546,9.28364709870604,8.44301393647515,10.0021675169445,8.57544011991931,8.10218725947561,7.82963211526283,8.68473628792944,12.0004238334895,9.76116933876356,10.0143199777875,9.1568242478367,10.0697037044404,10.4075967706762,8.41468675214754,12.6273461490165,10.3211126522855,5.05028044491965,7.71127617807132,7.19082721341613,11.4584692087513,10.2258315182738,10.2240503820005,13.4897712086491,7.48581147025307,7.73535794573874,4.01705497344571,4.85301122062934,7.41977073985349 | |phase1_expression=9.12848428497326,0.697950815278722,0.909998478779072,1.81478526784098,3.50627010962443,3.52546471014969,2.10251376535973,16.7860320474049,4.646027831005,3.27690336850791,6.33506482434368,4.3874687447435,13.8672591244277,12.6759583507546,4.66353666541928,6.2767332890846,4.89693314689703,7.25562980323947,7.26706498110415,6.36584477697045,11.9911039113008,6.45391182805754,4.17919662622297,3.51983330145495,4.5881856213434,1.14846392823004,0.430761996159075,2.80112602491656,3.04037471130198,2.77233142735924,3.99114919179548,3.17515336729816,6.1506478758457,15.8481681015439,6.35473563452804,4.3221007793208,4.90006455029686,2.92972141515835,2.3440060335714,3.66466620781659,8.2352408324342,4.09827290975067,3.88408282424923,4.15459499319405,3.85232338634155,3.85448179539531,4.69434806608824,9.3750817243592,6.15121311656521,6.9994763666742,5.31948402176378,7.18762821824858,5.70460860596304,17.4086914082723,8.73843877770406,3.60163210450326,2.57880095944881,0.515672092277442,11.9366711907163,11.1088105647127,11.4089652631112,3.72728985276045,3.55717918444456,2.2497492932035,1.97773272513395,1.4209602298922,3.29560121570245,3.45796474789399,23.5375419940244,22.680997639724,20.4015212510841,7.14127461009509,11.7060326704355,16.5362578940188,21.3735400370667,16.5459381589804,16.5173821499083,11.1087984134113,12.595735727012,14.7712642257817,15.4614117688072,11.4600941522487,15.355064945076,7.87867654044352,9.47349136216223,4.71405736757868,10.8202477407318,12.3023634244698,4.08921443999194,5.59229544790213,5.2175607966302,0.860423876981386,0,1.61910957491345,3.24888208723835,2.24013443548668,5.19644354487482,2.89731548382698,1.81850203222008,2.12003744706204,8.73229202615419,1.28326477414318,5.09610479413291,0,2.38140145112336,1.26679932737549,1.51657333504435,4.11061966988616,10.0985774622397,3.11728492036132,4.3371331691534,4.26251669636998,3.92046345335299,4.82312449768392,3.76283862834255,3.26733137457156,3.95511948374998,5.92857363371638,1.76922110389975,5.3383060482645,5.07935492458905,4.363877278217,3.72783522436244,4.68449275218475,6.28340120440365,4.08731288333746,8.02761334189666,6.59893004092748,4.57452817463033,12.4326230706003,9.60751265919116,12.942398267625,9.56033761057521,10.9957646652042,9.97382613885888,10.058958310201,3.1570202793598,5.84712761867437,8.33985102831127,7.99679052368601,12.6216829673823,11.7250073261071,15.6654052930654,14.4676625122286,10.5456573684558,11.5302348256365,11.056803498048,9.05461797586555,7.76044774558232,9.8335161687266,12.8444320639683,7.67185063496512,7.50727572909114,7.66154766348766,7.81972118350185,6.17006227137329,4.21327912387941,2.83082697826187,1.98914449576915,6.83515049367156,5.8631514995274,5.04173772090842,7.10234206755631,6.09969118416952,6.32495162838251,8.13868806626427,5.36546802799238,5.60473643362414,6.7469538464527,8.53670813211295,9.48505071686512,8.47959927066927,9.00155472693308,10.0654814070279,8.20130799400096,20.6838270882362,5.94753809370836,4.49565963328025,8.10495352033889,7.89604684325491,7.98978260196979,6.45387278794696,4.22518283305254,2.66315876557583,2.37264530772256,3.62337700392824,3.51869292320377,4.17808591286417,5.65395852645448,4.49409704327111,4.97117514711797,4.18196673834171,6.63837653335786,6.96915926919346,7.88954149711563,8.96065842519383,5.62462212786115,6.8031745293609,9.92813632850839,9.88987991463334,10.047918581848,8.02081565491703,2.07516838961004,2.8363667971736,5.89676985339609,2.9232074610031,4.86864291332407,4.58236603529592,3.8193877767213,5.75392274901621,6.32327384422638,3.84385978463314,5.75072826109418,6.32639611036456,4.68056509671841,5.05157755894223,2.51156378930677,3.85954817090694,4.98833613449833,4.54779388249163,7.65935389277522,5.7713329163564,7.97946844180907,8.5428191295326,7.85544014923845,8.39074685788535,5.2019597555043,4.20782910332672,5.42146213435456,6.39066927391378,5.69860440157455,5.64131328467895,0,1.63171705145613,0.983528546038072,3.03530420935206,14.2890025089135,14.417037450841,1.80328439914343,9.59389523376617,5.04813151066011,9.76096860741596,6.67812532971677,7.64700153448166,11.1399337041197,11.3230612315533,7.2865926301481,10.2289550268959,8.30104333687699,6.74774764485795,7.38088443082997,7.12262414669021,5.37526965866801,4.61916344323099,2.65490276679926,7.28341908464944,4.53485335447127,5.28094223316515,2.95301892880773,6.7635732547664,4.9101375701962,7.27067458955011,4.9909632973861,6.0046984007805,2.10837217149998,2.06271086496374,10.2131881726136,11.5239100180039,13.5826617971892,13.0745591369271,17.3793428969428,8.38333442729732,11.6829804627506,4.56697423671899,2.58138878870081,2.1183207086382,1.98475558249466,5.27636009412736,6.94297034792394,6.93598636673792,4.77489376012546,5.0883678920969,4.66369338607761,15.3903000668723,4.61351378154202,4.74689796315412,5.37064129372164,6.2161590811548,5.60446333656203,4.11800711771741,10.7086410896129,9.93655311497972,8.01559848065658,2.86401185404534,7.90839983952838,8.53941761932765,7.23635783506068,6.06356058441959,5.45906409365444,5.52943820177765,4.79390043206948,2.87931536182433,3.49960427887841,9.32008969630389,53.5508291749981,7.32631075615496,5.62558867554132,6.41688921535357,4.64975364519832,4.89972763923257,3.16864544343536,5.85919731797776,5.13810787685983,27.5405897741647,25.0586105444343,20.5407228408316,6.08175645870493,6.47079030138412,8.18501184760109,9.30938817470904,10.3314304486258,11.8993495024769,13.4397469728865,17.9720280907703,17.52756553065,13.3090564380629,13.2542717806063,16.644648603777,24.3103956537663,10.6563280299149,1.77588762699252,2.06341870201794,0.671538465456314,6.18206700903009,3.19060208267009,6.77661009788881,4.07299920250225,2.00628841614145,8.471277639256,7.82552902062201,4.58316410751517,3.78077001156113,12.3314853558716,12.0863023582352,6.07520250208625,8.55610286126019,6.34399372577886,6.21312374102184,13.492355185943,16.7590446828433,10.0732827394939,8.99494853152688,6.28839487883947,11.0306105070008,8.22312892865976,8.03536723231687,10.9112531261217,9.8551912587881,11.4065684950608,9.61994341068989,12.2670374785546,9.28364709870604,8.44301393647515,10.0021675169445,8.57544011991931,8.10218725947561,7.82963211526283,8.68473628792944,12.0004238334895,9.76116933876356,10.0143199777875,9.1568242478367,10.0697037044404,10.4075967706762,8.41468675214754,12.6273461490165,10.3211126522855,5.05028044491965,7.71127617807132,7.19082721341613,11.4584692087513,10.2258315182738,10.2240503820005,13.4897712086491,7.48581147025307,7.73535794573874,4.01705497344571,4.85301122062934,7.41977073985349 | ||
|short_description=p@chr6:18798452..18798538,- | |short_description=p@chr6:18798452..18798538,- | ||
}} | }} |
Revision as of 17:06, 14 November 2012
Short description: | p@chr6:18798452..18798538, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:18798452..18798538, - |
Coexpression cluster: | MCL_coexpression_mm9:376 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.19e-10 | 33 |
neuronal stem cell | 4.19e-10 | 33 |
neuroblast | 4.19e-10 | 33 |
electrically signaling cell | 4.19e-10 | 33 |
CNS neuron (sensu Vertebrata) | 1.08e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.08e-09 | 23 |
ectodermal cell | 3.46e-07 | 44 |
neurectodermal cell | 3.46e-07 | 44 |
neural cell | 4.85e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 8.08e-14 | 64 |
neural plate | 8.08e-14 | 64 |
presumptive neural plate | 8.08e-14 | 64 |
ectoderm-derived structure | 2.94e-13 | 95 |
ectoderm | 2.94e-13 | 95 |
presumptive ectoderm | 2.94e-13 | 95 |
pre-chordal neural plate | 8.44e-13 | 49 |
central nervous system | 8.78e-13 | 73 |
nervous system | 4.52e-12 | 75 |
regional part of nervous system | 1.12e-11 | 54 |
ecto-epithelium | 1.27e-11 | 73 |
neural tube | 6.90e-11 | 52 |
neural rod | 6.90e-11 | 52 |
future spinal cord | 6.90e-11 | 52 |
neural keel | 6.90e-11 | 52 |
regional part of brain | 9.29e-10 | 46 |
anterior neural tube | 1.13e-09 | 40 |
brain | 1.17e-09 | 47 |
future brain | 1.17e-09 | 47 |
structure with developmental contribution from neural crest | 2.27e-09 | 92 |
regional part of forebrain | 2.97e-09 | 39 |
forebrain | 2.97e-09 | 39 |
future forebrain | 2.97e-09 | 39 |
gray matter | 2.51e-07 | 34 |
anterior region of body | 4.21e-07 | 43 |
brain grey matter | 9.21e-07 | 29 |
regional part of telencephalon | 9.21e-07 | 29 |
telencephalon | 9.21e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.