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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!2.09e-26!73;UBERON:0001016!9.84e-26!75;UBERON:0002346!1.27e-24!64;UBERON:0003075!1.27e-24!64;UBERON:0007284!1.27e-24!64;UBERON:0004121!1.55e-24!95;UBERON:0000924!1.55e-24!95;UBERON:0006601!1.55e-24!95;UBERON:0010371!2.13e-21!73;UBERON:0000073!1.47e-20!54;UBERON:0003056!1.77e-20!49;UBERON:0001049!4.98e-20!52;UBERON:0005068!4.98e-20!52;UBERON:0006241!4.98e-20!52;UBERON:0007135!4.98e-20!52;UBERON:0010314!1.55e-19!92;UBERON:0000955!2.18e-17!47;UBERON:0006238!2.18e-17!47;UBERON:0003080!2.86e-17!40;UBERON:0002616!5.03e-17!46;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0002020!8.39e-16!34;UBERON:0003528!6.92e-13!29;UBERON:0002791!6.92e-13!29;UBERON:0001893!6.92e-13!29;UBERON:0000956!6.38e-09!21;UBERON:0001869!6.38e-09!21;UBERON:0000203!6.38e-09!21;UBERON:0002619!8.75e-07!17
|ontology_enrichment_uberon=UBERON:0001017!2.09e-26!73;UBERON:0001016!9.84e-26!75;UBERON:0002346!1.27e-24!64;UBERON:0003075!1.27e-24!64;UBERON:0007284!1.27e-24!64;UBERON:0004121!1.55e-24!95;UBERON:0000924!1.55e-24!95;UBERON:0006601!1.55e-24!95;UBERON:0010371!2.13e-21!73;UBERON:0000073!1.47e-20!54;UBERON:0003056!1.77e-20!49;UBERON:0001049!4.98e-20!52;UBERON:0005068!4.98e-20!52;UBERON:0006241!4.98e-20!52;UBERON:0007135!4.98e-20!52;UBERON:0010314!1.55e-19!92;UBERON:0000955!2.18e-17!47;UBERON:0006238!2.18e-17!47;UBERON:0003080!2.86e-17!40;UBERON:0002616!5.03e-17!46;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0002020!8.39e-16!34;UBERON:0003528!6.92e-13!29;UBERON:0002791!6.92e-13!29;UBERON:0001893!6.92e-13!29;UBERON:0000956!6.38e-09!21;UBERON:0001869!6.38e-09!21;UBERON:0000203!6.38e-09!21;UBERON:0002619!8.75e-07!17
|tfbs_overrepresentation_for_novel_motifs=0.687857,0.692428,0.300372,0.126379,0.368651,0.419638,0.5625,0.0157407,0.204405,1.58039,0.492054,0.184641,0.61373,0.582565,0.179964,0,0.915598,0.0390084,0.553842,0.0551341,0.251591,0.142591,0.581081,0.0411684,0.64228,1.83715,0.15247,0.884926,0.810037,0.366112,0.430073,0.430274,1.39536,0.692923,0.715228,0.257253,1.34172,1.02781,0.11922,0.717883,0.360254,0.437962,0.0570351,0.0484072,1.72834,0.765318,0.77462,0.476169,0.0377659,0.217247,0.332337,0.673439,0.0872144,0.553844,0.569458,0.594337,0.063844,1.00342,0.0507716,0.590972,0.413329,0.689471,0.089665,0.323367,1.80181,0.936728,0.693798,1.02539,0.409398,0.883956,1.45701,0.385483,3.40762,0.599674,1.36262,0.241392,0.124698,0.274952,0.398928,0.0738984,0.0782417,0.360462,0.245495,0.587152,1.24289,5.88866,0.248298,0.366601,0.287376,1.18318,0.758722,1.2522,0.44118,0.0437656,2.10145,0.245164,0.602892,0.44358,1.41495,1.65179,0.140916,0.430036,0.538321,0.332812,0.33197,2.00153,1.75762,0.154838,1.41535,0.253898,0.0992584,0.539906,0.258506,0.167109,0.765328,0.356538,1.07039,0.403561,0.917933,0.137053,0.604565,0.306855,0.22163,0.274265,0.816304,0.40202,0.575824,1.94502,0.692394,0.171211,0.523273,1.26476,0.665113,1.15917,0.785621,0.0260273,0.348707,0.142948,0.739526,1.5459,1.15207,0.698162,0.230233,0.439187,0.326804,0.142367,0.286009,1.50665,0.35209,1.4646,0.590476,7.13223,0.555246,0.256033,0.214931,0.629009,0.240389,0.753688,0.333249,1.71059,0.748413,0.496177,0.402392,0.323614,0.324177,0.209743,0.592606,0.183582,1.39213
}}
}}

Revision as of 18:11, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:72421950..72421977,-p@chr11:72421950..72421977
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Mm9::chr13:34966265..34966319,-p@chr13:34966265..34966319
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Mm9::chr15:75447162..75447217,+p2@Zfp41
Mm9::chr16:17070220..17070308,+p1@Ypel1
Mm9::chr17:28046151..28046209,-p2@Taf11
Mm9::chr17:35272408..35272484,+p2@Bag6
Mm9::chr17:35272640..35272726,+p3@Bag6
Mm9::chr17:35272871..35272889,+p8@Bag6
Mm9::chr18:24761965..24762031,-p2@Slc39a6
Mm9::chr19:4756557..4756623,+p1@Rbm4b
Mm9::chr19:4756831..4756869,+p@chr19:4756831..4756869
+
Mm9::chr2:131178570..131178592,-p1@Rnf24
Mm9::chr2:181333736..181333747,-p4@Samd10
Mm9::chr4:136158556..136158675,-p1@Kdm1a
Mm9::chr4:43455274..43455283,+p12@Tesk1
Mm9::chr4:48598070..48598087,+p4@Tmeff1
Mm9::chr4:48598099..48598117,+p6@Tmeff1
Mm9::chr5:111308865..111308906,+p1@ENSMUST00000143505
Mm9::chr6:122290218..122290262,-p3@Phc1
Mm9::chr8:107812968..107812983,-p2@4931428F04Rik
Mm9::chr8:107813020..107813038,-p4@4931428F04Rik
Mm9::chr8:112229540..112229566,+p2@Zfp821
Mm9::chr9:44581071..44581098,+p2@Ift46
Mm9::chrX:133492539..133492567,-p3@Tmsb15b2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system2.09e-2673
nervous system9.84e-2675
neurectoderm1.27e-2464
neural plate1.27e-2464
presumptive neural plate1.27e-2464
ectoderm-derived structure1.55e-2495
ectoderm1.55e-2495
presumptive ectoderm1.55e-2495
ecto-epithelium2.13e-2173
regional part of nervous system1.47e-2054
pre-chordal neural plate1.77e-2049
neural tube4.98e-2052
neural rod4.98e-2052
future spinal cord4.98e-2052
neural keel4.98e-2052
structure with developmental contribution from neural crest1.55e-1992
brain2.18e-1747
future brain2.18e-1747
anterior neural tube2.86e-1740
regional part of brain5.03e-1746
regional part of forebrain7.67e-1739
forebrain7.67e-1739
future forebrain7.67e-1739
gray matter8.39e-1634
brain grey matter6.92e-1329
regional part of telencephalon6.92e-1329
telencephalon6.92e-1329
cerebral cortex6.38e-0921
cerebral hemisphere6.38e-0921
pallium6.38e-0921
regional part of cerebral cortex8.75e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}