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MCL coexpression mm9:2369: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!1.74e-26!64;UBERON:0003075!1.74e-26!64;UBERON:0007284!1.74e-26!64;UBERON:0004121!3.01e-25!95;UBERON:0000924!3.01e-25!95;UBERON:0006601!3.01e-25!95;UBERON:0001017!1.11e-24!73;UBERON:0001016!1.51e-24!75;UBERON:0010371!8.54e-23!73;UBERON:0000073!8.63e-23!54;UBERON:0001049!1.24e-21!52;UBERON:0005068!1.24e-21!52;UBERON:0006241!1.24e-21!52;UBERON:0007135!1.24e-21!52;UBERON:0003056!4.29e-20!49;UBERON:0010314!5.60e-19!92;UBERON:0000955!4.05e-18!47;UBERON:0006238!4.05e-18!47;UBERON:0002616!1.41e-17!46;UBERON:0002020!8.08e-16!34;UBERON:0003080!9.37e-16!40;UBERON:0002780!3.35e-15!39;UBERON:0001890!3.35e-15!39;UBERON:0006240!3.35e-15!39;UBERON:0003528!1.32e-12!29;UBERON:0002791!1.32e-12!29;UBERON:0001893!1.32e-12!29;UBERON:0000468!1.61e-09!333;UBERON:0000956!2.23e-08!21;UBERON:0001869!2.23e-08!21;UBERON:0000203!2.23e-08!21
|ontology_enrichment_uberon=UBERON:0002346!1.74e-26!64;UBERON:0003075!1.74e-26!64;UBERON:0007284!1.74e-26!64;UBERON:0004121!3.01e-25!95;UBERON:0000924!3.01e-25!95;UBERON:0006601!3.01e-25!95;UBERON:0001017!1.11e-24!73;UBERON:0001016!1.51e-24!75;UBERON:0010371!8.54e-23!73;UBERON:0000073!8.63e-23!54;UBERON:0001049!1.24e-21!52;UBERON:0005068!1.24e-21!52;UBERON:0006241!1.24e-21!52;UBERON:0007135!1.24e-21!52;UBERON:0003056!4.29e-20!49;UBERON:0010314!5.60e-19!92;UBERON:0000955!4.05e-18!47;UBERON:0006238!4.05e-18!47;UBERON:0002616!1.41e-17!46;UBERON:0002020!8.08e-16!34;UBERON:0003080!9.37e-16!40;UBERON:0002780!3.35e-15!39;UBERON:0001890!3.35e-15!39;UBERON:0006240!3.35e-15!39;UBERON:0003528!1.32e-12!29;UBERON:0002791!1.32e-12!29;UBERON:0001893!1.32e-12!29;UBERON:0000468!1.61e-09!333;UBERON:0000956!2.23e-08!21;UBERON:0001869!2.23e-08!21;UBERON:0000203!2.23e-08!21
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.402508,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.993085,0.489964,0.755749,0.790506,0.96877,0.81685,0.502646,0,1.02248,0.473993,0.352304,0.683591,0.570433,0.197567,0.815872,0.481455,1.50428,0.846564,0.906602,0.727368,0.535752,0.790816,0.711848,1.12823,0.471365,0.318879,0.503207,0.623685,0.460474,0.786577,0.434783,0.40068,0.478558,0.717547,0.544696,0.504971,0.0986756,0.675898,0.938241,0.744678,0.949442,0.539131,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,1.44172,0.377213,0.205546,1.32691,0.323563,0.310084,0.854076,0.926147,1.08947,1.40903,0.37865,1.04072,0.884013,0.362446,1.20828,0.11855,0.808001,1.4408,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.961641,1.14445,0.938512,0.264911,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,1.53136,1.25851,0.576517,1.79716,1.51002,1.1991,0.869142,0.692434,1.02384,0.456123,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,1.2358,1.23918,0.680176,1.40022,0.839311,1.53196,0.195549,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,1.52606,0.993294,0.830321,0.459159,0.788782,0.0824127
}}
}}

Revision as of 21:18, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:17695743..17695746,+p1@Mir124a-2
Mm9::chr5:100588567..100588598,-p3@Tmem150c
Mm9::chr7:133966801..133966837,+p1@Fam57b
Mm9::chr7:133967218..133967320,+p2@Fam57b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)9.54e-1523
neuroblast (sensu Vertebrata)9.54e-1523
neuron6.25e-1433
neuronal stem cell6.25e-1433
neuroblast6.25e-1433
electrically signaling cell6.25e-1433
neural cell7.06e-1043
ectodermal cell8.08e-1044
neurectodermal cell8.08e-1044
electrically responsive cell6.18e-0939
electrically active cell6.18e-0939

Uber Anatomy
Ontology termp-valuen
neurectoderm1.74e-2664
neural plate1.74e-2664
presumptive neural plate1.74e-2664
ectoderm-derived structure3.01e-2595
ectoderm3.01e-2595
presumptive ectoderm3.01e-2595
central nervous system1.11e-2473
nervous system1.51e-2475
ecto-epithelium8.54e-2373
regional part of nervous system8.63e-2354
neural tube1.24e-2152
neural rod1.24e-2152
future spinal cord1.24e-2152
neural keel1.24e-2152
pre-chordal neural plate4.29e-2049
structure with developmental contribution from neural crest5.60e-1992
brain4.05e-1847
future brain4.05e-1847
regional part of brain1.41e-1746
gray matter8.08e-1634
anterior neural tube9.37e-1640
regional part of forebrain3.35e-1539
forebrain3.35e-1539
future forebrain3.35e-1539
brain grey matter1.32e-1229
regional part of telencephalon1.32e-1229
telencephalon1.32e-1229
multi-cellular organism1.61e-09333
cerebral cortex2.23e-0821
cerebral hemisphere2.23e-0821
pallium2.23e-0821


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}