FFCP PHASE1:Hg19::chr10:63995871..63995888,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=219790|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19364|TSSclassifier=N|UniProt=Q5SVY4|association_with_transcript=133bp_to_ENST00000315289,uc009xpf.1_5end|coexpression_cluster_id=C103|description=CAGE_peak_4_at_RTKN2_5end|id=chr10:63995871..63995888,-|ontology_enrichment_celltype=CL:0000791!7.82e-20!18;CL:0000789!7.82e-20!18;CL:0002420!7.82e-20!18;CL:0002419!7.82e-20!18;CL:0000790!7.82e-20!18;CL:0000084!3.44e-16!25;CL:0000827!3.44e-16!25;CL:0000625!5.31e-13!11;CL:0000624!4.57e-10!6;CL:0000838!2.15e-08!52;CL:0000542!4.07e-08!53;CL:0000051!4.07e-08!53|ontology_enrichment_celltype_v019=CL:0000791;9.94e-39;18!CL:0000789;9.94e-39;18!CL:0002419;9.94e-39;18!CL:0000084;1.62e-30;25!CL:0000625;6.43e-23;11!CL:0000624;1.84e-20;6!CL:0000898;2.75e-11;3!CL:0000226;2.41e-10;3!CL:0000842;2.41e-10;3!CL:0000623;6.07e-10;3!CL:0000542;2.38e-09;53!CL:0000815;2.60e-08;2!CL:0000792;2.60e-08;2!CL:0002677;2.60e-08;2|ontology_enrichment_celltype_v019_2=CL:0000791,9.45e-39,18;CL:0000789,9.45e-39,18;CL:0002420,9.45e-39,18;CL:0002419,9.45e-39,18;CL:0000790,9.45e-39,18;CL:0000084,1.66e-30,25;CL:0000827,1.66e-30,25;CL:0000625,6.11e-23,11;CL:0000624,1.85e-20,6;CL:0000838,3.88e-18,52;CL:0000542,1.05e-17,53;CL:0000051,1.05e-17,53;CL:0000898,2.90e-11,3;CL:0000226,1.86e-10,3;CL:0000842,1.86e-10,3;CL:0002087,4.51e-10,115;CL:0000623,5.89e-10,3;CL:0000825,5.89e-10,3;CL:0000738,1.93e-09,136;CL:0000815,2.60e-08,2;CL:0000792,2.60e-08,2;CL:0002677,2.60e-08,2|ontology_enrichment_development_v019=CL:0000790;9.94e-39;18!CL:0000051;2.38e-09;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!2.32e-10!15;UBERON:0000179!2.32e-10!15;UBERON:0000463!2.32e-10!15|ontology_enrichment_uberon_v019=UBERON:0000178;3.67e-19;15!UBERON:0000179;3.67e-19;15!UBERON:0000463;3.67e-19;15!UBERON:0002390;6.70e-11;32!UBERON:0002193;1.66e-08;42!UBERON:0002370;4.51e-08;2!UBERON:0005058;4.51e-08;2!UBERON:0009113;4.51e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.91e-19,15;UBERON:0000179,2.91e-19,15;UBERON:0000463,2.91e-19,15;UBERON:0002370,2.35e-08,4;UBERON:0005058,2.35e-08,4;UBERON:0009113,2.35e-08,4;UBERON:0003295,2.35e-08,4;UBERON:0005562,2.35e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.309632246632152,0,0,0,0,0,0,0,1.00272223735071,0.868043482863407,0.223915474239924,1.29557466407592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0.560508562981536,0,18.4907183907003,2.35806457649499,11.308082444973,161.502154547395,108.532114788986,147.715715389237,48.7066821019778,37.0996821427628,89.5601958723505,117.634498023903,140.547205294043,17.5485108024175,24.4511573412571,9.86627427622057,4.14525026678773,8.11448640058147,4.44859689486181,4.28065324943541,2.09071047609954,5.32553910678561,4.21542542962113,7.21617635513523,3.28925599625354,7.32700452945422,3.90650072313851,6.65316431113862,4.9689789295665,5.24745105733115,4.99722906209383,8.28720382154059,4.10563998460523,1.20964045934839,0,0.434473211648397,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.993943903390637,0.379891534993739,0.132409180813219,0,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0.213557388818567,0.423863802319124,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18048339180511,0,0.343135620597051,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,1.19812427745791,0,0,0.289562613335158,0,0,0,2.36436912242313,1.2937654491571,3.33691894327346,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0.12269149171914,0,0.271265023699736,0,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0,0,0,7.65041696654683,2.80428461064202,2.45473382947922,0,0,0,0.496215615637554,0.153461973288062,0,0.128139149255701,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,1.6068392984416,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0.18532421910392,0,0,0.632758849437452,0,0,0.42793898803392,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,2.29391162142713,1.70894156152249,3.81170840732462,2.05681136543097,4.53931317834902,3.24018862342869,1.58625035258854,0,0,0,0,0,2.06311345710401,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0.102268682502155,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0.414239055347196,3.47316215268366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0.260994291965212,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0.163565394255844,1.96565909307848,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.939839179798536,0.966868319603658,0,0,0,0,0,0.917458566809082,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0.476128862927481,9.42998083605689,11.2975980018461,0,0,0,0,0,1.68380132536469,0.573777643141411,0,0,0,0,0,2.34640942403454,0,0,0,1.81146414231924,0|short_description=p4@RTKN2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=219790 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19364 | |||
|TSSclassifier=N | |||
|UniProt=Q5SVY4 | |||
|association_with_transcript=133bp_to_ENST00000315289,uc009xpf.1_5end | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_4_at_RTKN2_5end | |||
|id=chr10:63995871..63995888,- | |||
|ontology_enrichment_celltype=CL:0000791!7.82e-20!18;CL:0000789!7.82e-20!18;CL:0002420!7.82e-20!18;CL:0002419!7.82e-20!18;CL:0000790!7.82e-20!18;CL:0000084!3.44e-16!25;CL:0000827!3.44e-16!25;CL:0000625!5.31e-13!11;CL:0000624!4.57e-10!6;CL:0000838!2.15e-08!52;CL:0000542!4.07e-08!53;CL:0000051!4.07e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.94e-39;18!CL:0000789;9.94e-39;18!CL:0002419;9.94e-39;18!CL:0000084;1.62e-30;25!CL:0000625;6.43e-23;11!CL:0000624;1.84e-20;6!CL:0000898;2.75e-11;3!CL:0000226;2.41e-10;3!CL:0000842;2.41e-10;3!CL:0000623;6.07e-10;3!CL:0000542;2.38e-09;53!CL:0000815;2.60e-08;2!CL:0000792;2.60e-08;2!CL:0002677;2.60e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.45e-39,18;CL:0000789,9.45e-39,18;CL:0002420,9.45e-39,18;CL:0002419,9.45e-39,18;CL:0000790,9.45e-39,18;CL:0000084,1.66e-30,25;CL:0000827,1.66e-30,25;CL:0000625,6.11e-23,11;CL:0000624,1.85e-20,6;CL:0000838,3.88e-18,52;CL:0000542,1.05e-17,53;CL:0000051,1.05e-17,53;CL:0000898,2.90e-11,3;CL:0000226,1.86e-10,3;CL:0000842,1.86e-10,3;CL:0002087,4.51e-10,115;CL:0000623,5.89e-10,3;CL:0000825,5.89e-10,3;CL:0000738,1.93e-09,136;CL:0000815,2.60e-08,2;CL:0000792,2.60e-08,2;CL:0002677,2.60e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;9.94e-39;18!CL:0000051;2.38e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.32e-10!15;UBERON:0000179!2.32e-10!15;UBERON:0000463!2.32e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.67e-19;15!UBERON:0000179;3.67e-19;15!UBERON:0000463;3.67e-19;15!UBERON:0002390;6.70e-11;32!UBERON:0002193;1.66e-08;42!UBERON:0002370;4.51e-08;2!UBERON:0005058;4.51e-08;2!UBERON:0009113;4.51e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.91e-19,15;UBERON:0000179,2.91e-19,15;UBERON:0000463,2.91e-19,15;UBERON:0002370,2.35e-08,4;UBERON:0005058,2.35e-08,4;UBERON:0009113,2.35e-08,4;UBERON:0003295,2.35e-08,4;UBERON:0005562,2.35e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.309632246632152,0,0,0,0,0,0,0,1.00272223735071,0.868043482863407,0.223915474239924,1.29557466407592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0.560508562981536,0,18.4907183907003,2.35806457649499,11.308082444973,161.502154547395,108.532114788986,147.715715389237,48.7066821019778,37.0996821427628,89.5601958723505,117.634498023903,140.547205294043,17.5485108024175,24.4511573412571,9.86627427622057,4.14525026678773,8.11448640058147,4.44859689486181,4.28065324943541,2.09071047609954,5.32553910678561,4.21542542962113,7.21617635513523,3.28925599625354,7.32700452945422,3.90650072313851,6.65316431113862,4.9689789295665,5.24745105733115,4.99722906209383,8.28720382154059,4.10563998460523,1.20964045934839,0,0.434473211648397,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.993943903390637,0.379891534993739,0.132409180813219,0,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0.213557388818567,0.423863802319124,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18048339180511,0,0.343135620597051,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,1.19812427745791,0,0,0.289562613335158,0,0,0,2.36436912242313,1.2937654491571,3.33691894327346,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0.12269149171914,0,0.271265023699736,0,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0,0,0,7.65041696654683,2.80428461064202,2.45473382947922,0,0,0,0.496215615637554,0.153461973288062,0,0.128139149255701,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,1.6068392984416,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0.18532421910392,0,0,0.632758849437452,0,0,0.42793898803392,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,2.29391162142713,1.70894156152249,3.81170840732462,2.05681136543097,4.53931317834902,3.24018862342869,1.58625035258854,0,0,0,0,0,2.06311345710401,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0.102268682502155,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0.414239055347196,3.47316215268366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0.260994291965212,0.226705925512272,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0.163565394255844,1.96565909307848,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0.939839179798536,0.966868319603658,0,0,0,0,0,0.917458566809082,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0.476128862927481,9.42998083605689,11.2975980018461,0,0,0,0,0,1.68380132536469,0.573777643141411,0,0,0,0,0,2.34640942403454,0,0,0,1.81146414231924,0 | |||
|short_description=p4@RTKN2 | |||
}} |
Revision as of 13:54, 10 September 2013
Short description: | p4@RTKN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RTKN2_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | 133bp_to_ENST00000315289, uc009xpf.1_5end |
EntrezGene: | RTKN2 |
HGNC: | 19364 |
UniProt: | Q5SVY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.45e-39 | 18 |
alpha-beta T cell | 9.45e-39 | 18 |
immature T cell | 9.45e-39 | 18 |
mature T cell | 9.45e-39 | 18 |
immature alpha-beta T cell | 9.45e-39 | 18 |
T cell | 1.66e-30 | 25 |
pro-T cell | 1.66e-30 | 25 |
CD8-positive, alpha-beta T cell | 6.11e-23 | 11 |
CD4-positive, alpha-beta T cell | 1.85e-20 | 6 |
lymphoid lineage restricted progenitor cell | 3.88e-18 | 52 |
lymphocyte | 1.05e-17 | 53 |
common lymphoid progenitor | 1.05e-17 | 53 |
naive T cell | 2.90e-11 | 3 |
single nucleate cell | 1.86e-10 | 3 |
mononuclear cell | 1.86e-10 | 3 |
nongranular leukocyte | 4.51e-10 | 115 |
natural killer cell | 5.89e-10 | 3 |
pro-NK cell | 5.89e-10 | 3 |
leukocyte | 1.93e-09 | 136 |
regulatory T cell | 2.60e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.60e-08 | 2 |
naive regulatory T cell | 2.60e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.91e-19 | 15 |
haemolymphatic fluid | 2.91e-19 | 15 |
organism substance | 2.91e-19 | 15 |
thymus | 2.35e-08 | 4 |
hemolymphoid system gland | 2.35e-08 | 4 |
thymic region | 2.35e-08 | 4 |
pharyngeal gland | 2.35e-08 | 4 |
thymus primordium | 2.35e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.