FFCP PHASE1:Hg19::chr12:105889859..105889862,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C328|description=CAGE_peak_at_chr12:105889859..105889862,+|id=chr12:105889859..105889862,+|ontology_enrichment_celltype=CL:0002139!1.31e-50!24;CL:0000115!1.23e-39!35;CL:0005020!2.43e-31!6;CL:0002138!2.43e-31!6;CL:0005022!2.43e-31!6;CL:0002078!5.28e-31!44;CL:0000071!9.34e-26!18;CL:0002546!9.34e-26!18;CL:0002618!9.89e-24!3;CL:0000213!2.43e-23!57;CL:0000215!2.43e-23!57;CL:0002543!1.61e-20!6;CL:0000222!1.86e-11!119;CL:1000413!4.45e-08!9|ontology_enrichment_celltype_v019=CL:0002138;8.35e-34;6!CL:0002139;2.06e-19;24!CL:0000115;3.83e-19;36!CL:0002618;8.69e-18;3!CL:0002078;2.96e-15;45!CL:0000213;1.54e-11;58!CL:0000215;1.54e-11;58!CL:0002188;3.10e-11;5!CL:0002543;1.38e-09;6!CL:1000746;2.11e-08;7!CL:1000612;2.11e-08;7|ontology_enrichment_celltype_v019_2=CL:0005020,8.35e-34,6;CL:0002138,8.35e-34,6;CL:0005022,8.35e-34,6;CL:0000115,9.32e-23,36;CL:0002139,1.88e-19,24;CL:0002078,2.09e-18,45;CL:0002618,6.76e-18,3;CL:0000213,1.72e-14,58;CL:0000215,1.72e-14,58;CL:0002188,3.60e-11,5;CL:0002543,1.22e-09,6;CL:1000746,2.35e-08,7;CL:1000612,2.35e-08,7;CL:0000222,2.26e-07,121|ontology_enrichment_development_v019=CL:0005022;8.35e-34;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!9.34e-26!18;UBERON:0004638!9.34e-26!18;UBERON:0004852!9.34e-26!18;UBERON:0001473!1.71e-23!8;UBERON:0004536!1.71e-23!8;UBERON:0006558!1.71e-23!8;UBERON:0000055!1.13e-21!69;UBERON:0000487!6.99e-21!22;UBERON:0002465!8.95e-19!10;UBERON:0002049!1.43e-18!79;UBERON:0007798!1.43e-18!79;UBERON:0006914!3.01e-18!25;UBERON:0004535!1.80e-16!110;UBERON:0001009!5.99e-16!113;UBERON:0002066!1.78e-14!5;UBERON:0001638!9.47e-14!9;UBERON:0003920!9.47e-14!9;UBERON:0004582!9.47e-14!9;UBERON:0001981!7.15e-11!60;UBERON:0007500!7.15e-11!60;UBERON:0004537!7.15e-11!60;UBERON:0006965!7.15e-11!60;UBERON:0004872!1.16e-10!84;UBERON:0003914!8.39e-10!118;UBERON:0004111!1.09e-08!241;UBERON:0003915!4.45e-08!9;UBERON:0004700!4.45e-08!9;UBERON:0001917!4.45e-08!9;UBERON:0000477!1.18e-07!286|ontology_enrichment_uberon_v019=UBERON:0001473;1.11e-25;8!UBERON:0004536;1.11e-25;8!UBERON:0006558;1.11e-25;8!UBERON:0002465;8.54e-21;10!UBERON:0002066;3.10e-11;5!UBERON:0000074;2.11e-08;7!UBERON:0001229;2.11e-08;7!UBERON:0002405;2.13e-08;27!UBERON:0001638;8.14e-07;9!UBERON:0010260;8.14e-07;9!UBERON:0003920;8.14e-07;9!UBERON:0004582;8.14e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.11e-25,8;UBERON:0004536,1.11e-25,8;UBERON:0006558,1.11e-25,8;UBERON:0002465,8.54e-21,10;UBERON:0002066,2.66e-11,5;UBERON:0010532,2.35e-08,7;UBERON:0000074,2.35e-08,7;UBERON:0001229,2.35e-08,7;UBERON:0001230,2.35e-08,7;UBERON:0003220,2.35e-08,7;UBERON:0005749,2.35e-08,7;UBERON:0004199,2.35e-08,7;UBERON:0004209,2.35e-08,7;UBERON:0004198,2.35e-08,7;UBERON:0005103,1.80e-07,8;UBERON:0000083,1.80e-07,8;UBERON:0009201,1.80e-07,8;UBERON:0006553,1.80e-07,8;UBERON:0003074,1.80e-07,8;UBERON:0003060,1.80e-07,8;UBERON:0000055,1.88e-07,68;UBERON:0001638,7.48e-07,9;UBERON:0010260,7.48e-07,9;UBERON:0003920,7.48e-07,9;UBERON:0004582,7.48e-07,9;UBERON:0000080,8.85e-07,9;UBERON:0002120,8.85e-07,9;UBERON:0004875,8.85e-07,9;UBERON:0005721,8.85e-07,9;UBERON:0005754,8.85e-07,9;UBERON:0007297,8.85e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,1.55050055501597,1.42306505074684,0.66944122552934,0.402829317109147,0,0,0,0.81014194788176,1.69669483739752,0.44905874525234,0.675668882899933,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:105889859..105889862,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C328 | |||
|description=CAGE_peak_at_chr12:105889859..105889862,+ | |||
|id=chr12:105889859..105889862,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.31e-50!24;CL:0000115!1.23e-39!35;CL:0005020!2.43e-31!6;CL:0002138!2.43e-31!6;CL:0005022!2.43e-31!6;CL:0002078!5.28e-31!44;CL:0000071!9.34e-26!18;CL:0002546!9.34e-26!18;CL:0002618!9.89e-24!3;CL:0000213!2.43e-23!57;CL:0000215!2.43e-23!57;CL:0002543!1.61e-20!6;CL:0000222!1.86e-11!119;CL:1000413!4.45e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002138;8.35e-34;6!CL:0002139;2.06e-19;24!CL:0000115;3.83e-19;36!CL:0002618;8.69e-18;3!CL:0002078;2.96e-15;45!CL:0000213;1.54e-11;58!CL:0000215;1.54e-11;58!CL:0002188;3.10e-11;5!CL:0002543;1.38e-09;6!CL:1000746;2.11e-08;7!CL:1000612;2.11e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.35e-34,6;CL:0002138,8.35e-34,6;CL:0005022,8.35e-34,6;CL:0000115,9.32e-23,36;CL:0002139,1.88e-19,24;CL:0002078,2.09e-18,45;CL:0002618,6.76e-18,3;CL:0000213,1.72e-14,58;CL:0000215,1.72e-14,58;CL:0002188,3.60e-11,5;CL:0002543,1.22e-09,6;CL:1000746,2.35e-08,7;CL:1000612,2.35e-08,7;CL:0000222,2.26e-07,121 | |||
|ontology_enrichment_development_v019=CL:0005022;8.35e-34;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!9.34e-26!18;UBERON:0004638!9.34e-26!18;UBERON:0004852!9.34e-26!18;UBERON:0001473!1.71e-23!8;UBERON:0004536!1.71e-23!8;UBERON:0006558!1.71e-23!8;UBERON:0000055!1.13e-21!69;UBERON:0000487!6.99e-21!22;UBERON:0002465!8.95e-19!10;UBERON:0002049!1.43e-18!79;UBERON:0007798!1.43e-18!79;UBERON:0006914!3.01e-18!25;UBERON:0004535!1.80e-16!110;UBERON:0001009!5.99e-16!113;UBERON:0002066!1.78e-14!5;UBERON:0001638!9.47e-14!9;UBERON:0003920!9.47e-14!9;UBERON:0004582!9.47e-14!9;UBERON:0001981!7.15e-11!60;UBERON:0007500!7.15e-11!60;UBERON:0004537!7.15e-11!60;UBERON:0006965!7.15e-11!60;UBERON:0004872!1.16e-10!84;UBERON:0003914!8.39e-10!118;UBERON:0004111!1.09e-08!241;UBERON:0003915!4.45e-08!9;UBERON:0004700!4.45e-08!9;UBERON:0001917!4.45e-08!9;UBERON:0000477!1.18e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.11e-25;8!UBERON:0004536;1.11e-25;8!UBERON:0006558;1.11e-25;8!UBERON:0002465;8.54e-21;10!UBERON:0002066;3.10e-11;5!UBERON:0000074;2.11e-08;7!UBERON:0001229;2.11e-08;7!UBERON:0002405;2.13e-08;27!UBERON:0001638;8.14e-07;9!UBERON:0010260;8.14e-07;9!UBERON:0003920;8.14e-07;9!UBERON:0004582;8.14e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.11e-25,8;UBERON:0004536,1.11e-25,8;UBERON:0006558,1.11e-25,8;UBERON:0002465,8.54e-21,10;UBERON:0002066,2.66e-11,5;UBERON:0010532,2.35e-08,7;UBERON:0000074,2.35e-08,7;UBERON:0001229,2.35e-08,7;UBERON:0001230,2.35e-08,7;UBERON:0003220,2.35e-08,7;UBERON:0005749,2.35e-08,7;UBERON:0004199,2.35e-08,7;UBERON:0004209,2.35e-08,7;UBERON:0004198,2.35e-08,7;UBERON:0005103,1.80e-07,8;UBERON:0000083,1.80e-07,8;UBERON:0009201,1.80e-07,8;UBERON:0006553,1.80e-07,8;UBERON:0003074,1.80e-07,8;UBERON:0003060,1.80e-07,8;UBERON:0000055,1.88e-07,68;UBERON:0001638,7.48e-07,9;UBERON:0010260,7.48e-07,9;UBERON:0003920,7.48e-07,9;UBERON:0004582,7.48e-07,9;UBERON:0000080,8.85e-07,9;UBERON:0002120,8.85e-07,9;UBERON:0004875,8.85e-07,9;UBERON:0005721,8.85e-07,9;UBERON:0005754,8.85e-07,9;UBERON:0007297,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,1.55050055501597,1.42306505074684,0.66944122552934,0.402829317109147,0,0,0,0.81014194788176,1.69669483739752,0.44905874525234,0.675668882899933,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:105889859..105889862,+ | |||
}} |
Revision as of 20:36, 10 September 2013
Short description: | p@chr12:105889859..105889862, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:105889859..105889862, + |
Coexpression cluster: | C328_Endothelial_Lymphatic_Renal_Hepatic_chronic_extraskeletal_adipose |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.35e-34 | 6 |
endothelial cell of lymphatic vessel | 8.35e-34 | 6 |
vascular lymphangioblast | 8.35e-34 | 6 |
endothelial cell | 9.32e-23 | 36 |
endothelial cell of vascular tree | 1.88e-19 | 24 |
meso-epithelial cell | 2.09e-18 | 45 |
endothelial cell of umbilical vein | 6.76e-18 | 3 |
lining cell | 1.72e-14 | 58 |
barrier cell | 1.72e-14 | 58 |
glomerular endothelial cell | 3.60e-11 | 5 |
vein endothelial cell | 1.22e-09 | 6 |
glomerular cell | 2.35e-08 | 7 |
kidney corpuscule cell | 2.35e-08 | 7 |
mesodermal cell | 2.26e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.11e-25 | 8 |
lymph vasculature | 1.11e-25 | 8 |
lymphatic part of lymphoid system | 1.11e-25 | 8 |
lymphoid system | 8.54e-21 | 10 |
umbilical vein | 2.66e-11 | 5 |
primitive nephron | 2.35e-08 | 7 |
renal glomerulus | 2.35e-08 | 7 |
renal corpuscle | 2.35e-08 | 7 |
glomerular capsule | 2.35e-08 | 7 |
metanephric mesenchyme | 2.35e-08 | 7 |
glomerular tuft | 2.35e-08 | 7 |
S-shaped body | 2.35e-08 | 7 |
renal vesicle | 2.35e-08 | 7 |
comma-shaped body | 2.35e-08 | 7 |
mesonephric epithelium | 1.80e-07 | 8 |
mesonephric tubule | 1.80e-07 | 8 |
nephric duct | 1.80e-07 | 8 |
renal duct | 1.80e-07 | 8 |
mesonephric duct | 1.80e-07 | 8 |
pronephric duct | 1.80e-07 | 8 |
vessel | 1.88e-07 | 68 |
vein | 7.48e-07 | 9 |
umbilical blood vessel | 7.48e-07 | 9 |
venous blood vessel | 7.48e-07 | 9 |
venous system | 7.48e-07 | 9 |
mesonephros | 8.85e-07 | 9 |
pronephros | 8.85e-07 | 9 |
nephrogenic cord | 8.85e-07 | 9 |
pronephric mesoderm | 8.85e-07 | 9 |
rostral part of nephrogenic cord | 8.85e-07 | 9 |
presumptive pronephric mesoderm | 8.85e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.