FFCP PHASE1:Hg19::chr16:59204024..59204025,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr16:59204024..59204025,+|id=chr16:59204024..59204025,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000243;1.09e-12;15!CL:0000125;1.09e-12;15!CL:0000095;1.81e-11;17!CL:0002319;2.22e-08;25|ontology_enrichment_celltype_v019_2=CL:0000243,1.09e-12,15;CL:0000125,1.09e-12,15;CL:0000030,1.09e-12,15;CL:0000339,1.09e-12,15;CL:0000095,1.81e-11,17;CL:0000123,1.81e-11,17;CL:0002319,2.22e-08,25|ontology_enrichment_development_v019=UBERON:0000358;1.46e-50;1!UBERON:0005425;3.99e-50;1!UBERON:0006238;5.63e-19;10!UBERON:0003056;9.45e-18;3!CL:0000339;1.09e-12;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3093;1.71e-17;11|ontology_enrichment_disease_v019_2=DOID:3093,1.71e-17,11|ontology_enrichment_uberon=UBERON:0001049!1.31e-24!57;UBERON:0005068!1.31e-24!57;UBERON:0006241!1.31e-24!57;UBERON:0007135!1.31e-24!57;UBERON:0001017!2.22e-22!82;UBERON:0005743!5.82e-21!86;UBERON:0000955!1.62e-20!69;UBERON:0006238!1.62e-20!69;UBERON:0000073!8.88e-20!94;UBERON:0001016!8.88e-20!94;UBERON:0002616!1.37e-19!59;UBERON:0002780!3.37e-19!41;UBERON:0001890!3.37e-19!41;UBERON:0006240!3.37e-19!41;UBERON:0002020!6.89e-19!34;UBERON:0003528!6.89e-19!34;UBERON:0003080!1.26e-18!42;UBERON:0003075!3.05e-18!86;UBERON:0007284!3.05e-18!86;UBERON:0007023!9.27e-18!115;UBERON:0002346!4.39e-17!90;UBERON:0001893!1.09e-16!34;UBERON:0001869!7.91e-16!32;UBERON:0002791!2.51e-15!33;UBERON:0002420!2.35e-13!9;UBERON:0007245!2.35e-13!9;UBERON:0010009!2.35e-13!9;UBERON:0010011!2.35e-13!9;UBERON:0000454!2.35e-13!9;UBERON:0000349!2.47e-13!5;UBERON:0002308!1.71e-12!9;UBERON:0000125!1.71e-12!9;UBERON:0004121!2.00e-11!169;UBERON:0002619!2.20e-11!22;UBERON:0003056!2.63e-11!61;UBERON:0000924!5.95e-11!173;UBERON:0006601!5.95e-11!173;UBERON:0002298!2.73e-10!8;UBERON:0000153!2.78e-10!129;UBERON:0007811!2.78e-10!129;UBERON:0000033!2.78e-10!123;UBERON:0000956!8.69e-10!25;UBERON:0000203!8.69e-10!25;UBERON:0009663!9.37e-09!7;UBERON:0001950!2.13e-08!20;UBERON:0001896!6.11e-08!3;UBERON:0005290!6.11e-08!3;UBERON:0010096!6.11e-08!3;UBERON:0006331!1.13e-07!3;UBERON:0003076!3.52e-07!15;UBERON:0003057!3.52e-07!15;UBERON:0001876!8.30e-07!2|ontology_enrichment_uberon_v019=UBERON:0000941;3.99e-50;1!UBERON:0001785;3.99e-50;1!UBERON:0002464;3.99e-50;1!UBERON:0004904;3.99e-50;1!UBERON:0001021;3.99e-50;1!UBERON:0003714;7.14e-26;2!UBERON:0005162;7.14e-26;2!UBERON:0000122;7.14e-26;2!UBERON:0000010;8.37e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.99e-50,1;UBERON:0001785,3.99e-50,1;UBERON:0002464,3.99e-50,1;UBERON:0004904,3.99e-50,1;UBERON:0001021,3.99e-50,1;UBERON:0003902,3.99e-50,1;UBERON:0005425,3.99e-50,1;UBERON:0003714,7.14e-26,2;UBERON:0005162,7.14e-26,2;UBERON:0000122,7.14e-26,2;UBERON:0001781,1.13e-13,4;UBERON:0000966,1.44e-09,6;UBERON:0005388,1.44e-09,6;UBERON:0001802,1.44e-09,6;UBERON:0000010,8.37e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0.267540828089713,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0.953619473882272,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0.126621591911757,0,0.0801588202515337,0,0,0,0,0,0,0,0,1.49494626680975,1.04602846312333,0,0,0,0.136905378891993,0,0,0,0,0.458320848023367,0.717873024576814,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0.7952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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr16:59204024..59204025,+ | |||
|id=chr16:59204024..59204025,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000243;1.09e-12;15!CL:0000125;1.09e-12;15!CL:0000095;1.81e-11;17!CL:0002319;2.22e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.09e-12,15;CL:0000125,1.09e-12,15;CL:0000030,1.09e-12,15;CL:0000339,1.09e-12,15;CL:0000095,1.81e-11,17;CL:0000123,1.81e-11,17;CL:0002319,2.22e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.46e-50;1!UBERON:0005425;3.99e-50;1!UBERON:0006238;5.63e-19;10!UBERON:0003056;9.45e-18;3!CL:0000339;1.09e-12;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;1.71e-17;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.71e-17,11 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.31e-24!57;UBERON:0005068!1.31e-24!57;UBERON:0006241!1.31e-24!57;UBERON:0007135!1.31e-24!57;UBERON:0001017!2.22e-22!82;UBERON:0005743!5.82e-21!86;UBERON:0000955!1.62e-20!69;UBERON:0006238!1.62e-20!69;UBERON:0000073!8.88e-20!94;UBERON:0001016!8.88e-20!94;UBERON:0002616!1.37e-19!59;UBERON:0002780!3.37e-19!41;UBERON:0001890!3.37e-19!41;UBERON:0006240!3.37e-19!41;UBERON:0002020!6.89e-19!34;UBERON:0003528!6.89e-19!34;UBERON:0003080!1.26e-18!42;UBERON:0003075!3.05e-18!86;UBERON:0007284!3.05e-18!86;UBERON:0007023!9.27e-18!115;UBERON:0002346!4.39e-17!90;UBERON:0001893!1.09e-16!34;UBERON:0001869!7.91e-16!32;UBERON:0002791!2.51e-15!33;UBERON:0002420!2.35e-13!9;UBERON:0007245!2.35e-13!9;UBERON:0010009!2.35e-13!9;UBERON:0010011!2.35e-13!9;UBERON:0000454!2.35e-13!9;UBERON:0000349!2.47e-13!5;UBERON:0002308!1.71e-12!9;UBERON:0000125!1.71e-12!9;UBERON:0004121!2.00e-11!169;UBERON:0002619!2.20e-11!22;UBERON:0003056!2.63e-11!61;UBERON:0000924!5.95e-11!173;UBERON:0006601!5.95e-11!173;UBERON:0002298!2.73e-10!8;UBERON:0000153!2.78e-10!129;UBERON:0007811!2.78e-10!129;UBERON:0000033!2.78e-10!123;UBERON:0000956!8.69e-10!25;UBERON:0000203!8.69e-10!25;UBERON:0009663!9.37e-09!7;UBERON:0001950!2.13e-08!20;UBERON:0001896!6.11e-08!3;UBERON:0005290!6.11e-08!3;UBERON:0010096!6.11e-08!3;UBERON:0006331!1.13e-07!3;UBERON:0003076!3.52e-07!15;UBERON:0003057!3.52e-07!15;UBERON:0001876!8.30e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.99e-50;1!UBERON:0001785;3.99e-50;1!UBERON:0002464;3.99e-50;1!UBERON:0004904;3.99e-50;1!UBERON:0001021;3.99e-50;1!UBERON:0003714;7.14e-26;2!UBERON:0005162;7.14e-26;2!UBERON:0000122;7.14e-26;2!UBERON:0000010;8.37e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.99e-50,1;UBERON:0001785,3.99e-50,1;UBERON:0002464,3.99e-50,1;UBERON:0004904,3.99e-50,1;UBERON:0001021,3.99e-50,1;UBERON:0003902,3.99e-50,1;UBERON:0005425,3.99e-50,1;UBERON:0003714,7.14e-26,2;UBERON:0005162,7.14e-26,2;UBERON:0000122,7.14e-26,2;UBERON:0001781,1.13e-13,4;UBERON:0000966,1.44e-09,6;UBERON:0005388,1.44e-09,6;UBERON:0001802,1.44e-09,6;UBERON:0000010,8.37e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0.267540828089713,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0.953619473882272,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0.126621591911757,0,0.0801588202515337,0,0,0,0,0,0,0,0,1.49494626680975,1.04602846312333,0,0,0,0.136905378891993,0,0,0,0,0.458320848023367,0.717873024576814,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492555124496034,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,0.573409195690071,0.110929051536852,0.0620964029413835,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0.219284049578707,0,0,0,0,0,0,0.691292180758654,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0,0,0.322951291263702,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0.628462359664008,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0,0,0,0.730336388246517,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0.267964130156178,0.829169439458779,0.413731983447581,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0,0.0717222053926763,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p@chr16:59204024..59204025,+ | |||
}} |
Revision as of 10:59, 11 September 2013
Short description: | p@chr16:59204024..59204025, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:59204024..59204025, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.09e-12 | 15 |
glial cell | 1.09e-12 | 15 |
glioblast | 1.09e-12 | 15 |
glioblast (sensu Vertebrata) | 1.09e-12 | 15 |
neuron associated cell | 1.81e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 1.81e-11 | 17 |
neural cell | 2.22e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.99e-50 | 1 |
cranial nerve | 3.99e-50 | 1 |
nerve trunk | 3.99e-50 | 1 |
nerve connecting eye with brain | 3.99e-50 | 1 |
nerve | 3.99e-50 | 1 |
retinal neural layer | 3.99e-50 | 1 |
presumptive neural retina | 3.99e-50 | 1 |
neural tissue | 7.14e-26 | 2 |
multi cell component structure | 7.14e-26 | 2 |
neuron projection bundle | 7.14e-26 | 2 |
layer of retina | 1.13e-13 | 4 |
retina | 1.44e-09 | 6 |
photoreceptor array | 1.44e-09 | 6 |
posterior segment of eyeball | 1.44e-09 | 6 |
peripheral nervous system | 8.37e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.71e-17 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.