FFCP PHASE1:Hg19::chr19:39690173..39690176,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:39690173..39690176,+|id=chr19:39690173..39690176,+|ontology_enrichment_celltype=CL:0000453!6.71e-09!5|ontology_enrichment_celltype_v019=CL:0000453;1.14e-23;5!CL:0000990;1.23e-13;8!CL:0000451;2.42e-11;10|ontology_enrichment_celltype_v019_2=CL:0000453,9.08e-24,5;CL:0000990,1.08e-13,8;CL:0000451,2.18e-11,10|ontology_enrichment_development_v019=UBERON:0005425;9.98e-30;1!UBERON:0003056;7.42e-11;3!UBERON:0005062;2.26e-08;4!UBERON:0007284;2.26e-08;4|ontology_enrichment_disease=DOID:305!4.45e-07!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001737!1.07e-12!9;UBERON:0001557!6.18e-11!19|ontology_enrichment_uberon_v019=UBERON:0000941;9.98e-30;1!UBERON:0001785;9.98e-30;1!UBERON:0002464;9.98e-30;1!UBERON:0004904;9.98e-30;1!UBERON:0001021;9.98e-30;1!UBERON:0002372;2.37e-29;1!UBERON:0002134;2.37e-29;1!UBERON:0001961;2.37e-29;1!UBERON:0001744;2.37e-29;1!UBERON:0005208;2.37e-29;1!UBERON:0004145;2.37e-29;1!UBERON:0005946;2.37e-29;1!UBERON:0001042;2.37e-29;1!UBERON:0005965;2.37e-29;1!UBERON:0001735;2.37e-29;1!UBERON:0002078;2.37e-29;1!UBERON:0003714;1.33e-15;2!UBERON:0005162;1.33e-15;2!UBERON:0000122;1.33e-15;2!UBERON:0006562;2.05e-15;2!UBERON:0002081;2.05e-15;2!UBERON:0002133;2.05e-15;2!UBERON:0003978;9.90e-11;3!UBERON:0004151;9.90e-11;3!UBERON:0000946;9.90e-11;3|ontology_enrichment_uberon_v019_2=UBERON:0000941,9.99e-30,1;UBERON:0001785,9.99e-30,1;UBERON:0002464,9.99e-30,1;UBERON:0004904,9.99e-30,1;UBERON:0001021,9.99e-30,1;UBERON:0003902,9.99e-30,1;UBERON:0005425,9.99e-30,1;UBERON:0002134,1.78e-29,1;UBERON:0005208,1.78e-29,1;UBERON:0005946,1.78e-29,1;UBERON:0005965,1.78e-29,1;UBERON:0002078,1.78e-29,1;UBERON:0002372,3.16e-29,1;UBERON:0001961,3.16e-29,1;UBERON:0001744,3.16e-29,1;UBERON:0001735,3.16e-29,1;UBERON:0003714,1.33e-15,2;UBERON:0005162,1.33e-15,2;UBERON:0000122,1.33e-15,2;UBERON:0002081,1.78e-15,2;UBERON:0002133,1.78e-15,2;UBERON:0010227,1.78e-15,2;UBERON:0003978,8.99e-11,3;UBERON:0009751,8.99e-11,3;UBERON:0004151,8.99e-11,3;UBERON:0000946,8.99e-11,3;UBERON:0002523,8.99e-11,3;UBERON:0005983,8.99e-11,3;UBERON:0004145,8.99e-11,3;UBERON:0002165,8.99e-11,3;UBERON:0002062,8.99e-11,3;UBERON:0007280,8.99e-11,3;UBERON:0001781,1.82e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.236613600079688,0,0.723033089650446,0.330881918197182,0.217879444092406,0.474541238222193,0.269662616320329,0.588664395376038,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,0.507983154337352,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0,0,0.344743373241465,0,0,0,0,0,0.110579259931225,0,0,0.10893846351899,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0.816164040795739,0,0.216388639742091,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,0,0,0,0.19871461170299,0,0,0,0,0,0.144090417154106,0,0,0.14405479798815,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0,0.899895566206002,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0.308801447160972,0,0,0,0,0.256241518587947,0,0,0.138258436151731,1.7537427795545,0.531459361253452,5.07052722193117,0,0.245772908753719,0,0,0,0,0,0.184105950251841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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:39690173..39690176,+ | |||
|id=chr19:39690173..39690176,+ | |||
|ontology_enrichment_celltype=CL:0000453!6.71e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0000453;1.14e-23;5!CL:0000990;1.23e-13;8!CL:0000451;2.42e-11;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,9.08e-24,5;CL:0000990,1.08e-13,8;CL:0000451,2.18e-11,10 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.98e-30;1!UBERON:0003056;7.42e-11;3!UBERON:0005062;2.26e-08;4!UBERON:0007284;2.26e-08;4 | |||
|ontology_enrichment_disease=DOID:305!4.45e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.07e-12!9;UBERON:0001557!6.18e-11!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.98e-30;1!UBERON:0001785;9.98e-30;1!UBERON:0002464;9.98e-30;1!UBERON:0004904;9.98e-30;1!UBERON:0001021;9.98e-30;1!UBERON:0002372;2.37e-29;1!UBERON:0002134;2.37e-29;1!UBERON:0001961;2.37e-29;1!UBERON:0001744;2.37e-29;1!UBERON:0005208;2.37e-29;1!UBERON:0004145;2.37e-29;1!UBERON:0005946;2.37e-29;1!UBERON:0001042;2.37e-29;1!UBERON:0005965;2.37e-29;1!UBERON:0001735;2.37e-29;1!UBERON:0002078;2.37e-29;1!UBERON:0003714;1.33e-15;2!UBERON:0005162;1.33e-15;2!UBERON:0000122;1.33e-15;2!UBERON:0006562;2.05e-15;2!UBERON:0002081;2.05e-15;2!UBERON:0002133;2.05e-15;2!UBERON:0003978;9.90e-11;3!UBERON:0004151;9.90e-11;3!UBERON:0000946;9.90e-11;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,9.99e-30,1;UBERON:0001785,9.99e-30,1;UBERON:0002464,9.99e-30,1;UBERON:0004904,9.99e-30,1;UBERON:0001021,9.99e-30,1;UBERON:0003902,9.99e-30,1;UBERON:0005425,9.99e-30,1;UBERON:0002134,1.78e-29,1;UBERON:0005208,1.78e-29,1;UBERON:0005946,1.78e-29,1;UBERON:0005965,1.78e-29,1;UBERON:0002078,1.78e-29,1;UBERON:0002372,3.16e-29,1;UBERON:0001961,3.16e-29,1;UBERON:0001744,3.16e-29,1;UBERON:0001735,3.16e-29,1;UBERON:0003714,1.33e-15,2;UBERON:0005162,1.33e-15,2;UBERON:0000122,1.33e-15,2;UBERON:0002081,1.78e-15,2;UBERON:0002133,1.78e-15,2;UBERON:0010227,1.78e-15,2;UBERON:0003978,8.99e-11,3;UBERON:0009751,8.99e-11,3;UBERON:0004151,8.99e-11,3;UBERON:0000946,8.99e-11,3;UBERON:0002523,8.99e-11,3;UBERON:0005983,8.99e-11,3;UBERON:0004145,8.99e-11,3;UBERON:0002165,8.99e-11,3;UBERON:0002062,8.99e-11,3;UBERON:0007280,8.99e-11,3;UBERON:0001781,1.82e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0.236613600079688,0,0.723033089650446,0.330881918197182,0.217879444092406,0.474541238222193,0.269662616320329,0.588664395376038,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,0.507983154337352,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0,0,0.344743373241465,0,0,0,0,0,0.110579259931225,0,0,0.10893846351899,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0.816164040795739,0,0.216388639742091,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,0,0,0,0.19871461170299,0,0,0,0,0,0.144090417154106,0,0,0.14405479798815,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0,0.899895566206002,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0.308801447160972,0,0,0,0,0.256241518587947,0,0,0.138258436151731,1.7537427795545,0.531459361253452,5.07052722193117,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,4.28308260777463,0.0981477185010256,0,0.183428598521679,0,0,0.690359926060101,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0.929195074296532,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0.447421727191169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0.267964130156178,0,0,0.639701945702943,0.23806443146374,0,0.0620747142958579,0,0,0.202117188958219,0.653150243690884,0,1.21233695426258,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr19:39690173..39690176,+ | |||
}} |
Revision as of 20:31, 11 September 2013
Short description: | p@chr19:39690173..39690176, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:39690173..39690176, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 9.08e-24 | 5 |
conventional dendritic cell | 1.08e-13 | 8 |
dendritic cell | 2.18e-11 | 10 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 9.99e-30 | 1 |
cranial nerve | 9.99e-30 | 1 |
nerve trunk | 9.99e-30 | 1 |
nerve connecting eye with brain | 9.99e-30 | 1 |
nerve | 9.99e-30 | 1 |
retinal neural layer | 9.99e-30 | 1 |
presumptive neural retina | 9.99e-30 | 1 |
tricuspid valve | 1.78e-29 | 1 |
right atrium valve | 1.78e-29 | 1 |
outflow tract of atrium | 1.78e-29 | 1 |
outflow part of right atrium | 1.78e-29 | 1 |
right cardiac atrium | 1.78e-29 | 1 |
tonsil | 3.16e-29 | 1 |
mucosa-associated lymphoid tissue | 3.16e-29 | 1 |
lymphoid tissue | 3.16e-29 | 1 |
tonsillar ring | 3.16e-29 | 1 |
neural tissue | 1.33e-15 | 2 |
multi cell component structure | 1.33e-15 | 2 |
neuron projection bundle | 1.33e-15 | 2 |
cardiac atrium | 1.78e-15 | 2 |
atrioventricular valve | 1.78e-15 | 2 |
future cardiac atrium | 1.78e-15 | 2 |
valve | 8.99e-11 | 3 |
cardiac mesenchyme | 8.99e-11 | 3 |
cardiac chamber | 8.99e-11 | 3 |
cardial valve | 8.99e-11 | 3 |
tunica intima | 8.99e-11 | 3 |
heart layer | 8.99e-11 | 3 |
outflow tract | 8.99e-11 | 3 |
endocardium | 8.99e-11 | 3 |
endocardial cushion | 8.99e-11 | 3 |
presumptive endocardium | 8.99e-11 | 3 |
layer of retina | 1.82e-08 | 4 |
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