FFCP PHASE1:Hg19::chr1:39570134..39570169,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C7|description=CAGE_peak_at_chr1:39570134..39570169,+|id=chr1:39570134..39570169,+|ontology_enrichment_celltype=CL:0002139!4.01e-23!24;CL:0002057!4.70e-21!42;CL:0002009!2.31e-20!65;CL:0000115!3.31e-20!35;CL:0000860!5.59e-19!45;CL:0002194!2.19e-18!63;CL:0000576!2.19e-18!63;CL:0000040!2.19e-18!63;CL:0000559!2.19e-18!63;CL:0000557!1.31e-17!71;CL:0002078!6.16e-17!44;CL:0000071!7.04e-16!18;CL:0002546!7.04e-16!18;CL:0000213!1.42e-15!57;CL:0000215!1.42e-15!57;CL:0000839!2.05e-15!70;CL:0000766!2.48e-13!76;CL:0002543!3.75e-09!6;CL:0005020!5.02e-09!6;CL:0002138!5.02e-09!6;CL:0005022!5.02e-09!6;CL:0000763!3.51e-07!112;CL:0000049!3.51e-07!112;CL:0002087!6.85e-07!119|ontology_enrichment_celltype_v019=CL:0000860;7.19e-46;33!CL:0002057;7.19e-46;33!CL:0000473;1.90e-36;39!CL:0000234;1.90e-36;39!CL:0002139;4.10e-31;24!CL:0000576;9.68e-22;48!CL:0000115;9.62e-21;36!CL:0000071;4.05e-20;18!CL:0002543;3.38e-13;6!CL:0002138;3.78e-13;6!CL:1000413;3.95e-13;9!CL:0000766;1.69e-12;69!CL:0002078;6.84e-12;45!CL:0001014;5.79e-11;2!CL:0001016;5.79e-11;2!CL:0002545;1.48e-10;2!CL:0000213;1.95e-09;58!CL:0000215;1.95e-09;58!CL:0000763;8.09e-08;100!CL:0002544;9.97e-08;6!CL:0002618;2.58e-07;3|ontology_enrichment_celltype_v019_2=CL:0000860,2.46e-39,42;CL:0002057,2.46e-39,42;CL:0000473,1.35e-37,48;CL:0000234,1.35e-37,48;CL:0002009,1.90e-34,61;CL:0002139,2.01e-31,24;CL:0000557,5.89e-31,67;CL:0002194,3.84e-29,59;CL:0000576,3.84e-29,59;CL:0000040,3.84e-29,59;CL:0000559,3.84e-29,59;CL:0000839,1.31e-25,66;CL:0000115,2.17e-23,36;CL:0000766,4.01e-23,72;CL:0000071,2.03e-20,18;CL:0002546,2.03e-20,18;CL:0002078,4.13e-18,45;CL:0000763,2.13e-17,108;CL:0000049,2.13e-17,108;CL:0002031,3.56e-15,120;CL:0000213,2.20e-13,58;CL:0000215,2.20e-13,58;CL:1000413,2.31e-13,9;CL:0002543,2.54e-13,6;CL:0005020,3.98e-13,6;CL:0002138,3.98e-13,6;CL:0005022,3.98e-13,6;CL:0002087,7.48e-13,115;CL:0000738,8.05e-13,136;CL:0001014,4.30e-11,2;CL:0001016,4.30e-11,2;CL:0002545,8.65e-11,2;CL:0002032,4.38e-10,161;CL:0000837,4.38e-10,161;CL:0000037,1.82e-09,168;CL:0000988,9.59e-09,177;CL:0002544,6.13e-08,6;CL:0002618,2.85e-07,3|ontology_enrichment_development_v019=CL:0002057;7.62e-29;42!CL:0002546;4.05e-20;18!CL:0005022;3.78e-13;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!6.56e-16!112;UBERON:0001986!7.04e-16!18;UBERON:0004638!7.04e-16!18;UBERON:0004852!7.04e-16!18;UBERON:0002371!2.89e-15!80;UBERON:0001474!2.26e-14!86;UBERON:0002405!2.48e-14!115;UBERON:0003081!3.67e-14!216;UBERON:0002390!4.13e-12!102;UBERON:0003061!4.13e-12!102;UBERON:0000487!4.34e-12!22;UBERON:0004765!6.39e-12!101;UBERON:0001434!6.39e-12!101;UBERON:0006914!2.11e-11!25;UBERON:0000467!4.64e-10!625;UBERON:0000480!5.54e-10!626;UBERON:0000468!2.12e-09!659;UBERON:0000055!1.76e-08!69;UBERON:0000922!7.54e-08!612;UBERON:0002049!1.29e-07!79;UBERON:0007798!1.29e-07!79;UBERON:0000923!3.37e-07!604;UBERON:0005291!3.37e-07!604;UBERON:0006598!3.37e-07!604;UBERON:0002532!3.37e-07!604;UBERON:0002050!3.93e-07!605;UBERON:0005423!3.93e-07!605|ontology_enrichment_uberon_v019=UBERON:0004638;4.05e-20;18!UBERON:0001986;4.05e-20;18!UBERON:0004852;4.05e-20;18!UBERON:0000487;3.48e-16;22!UBERON:0006914;4.64e-14;25!UBERON:0003915;3.95e-13;9!UBERON:0004700;3.95e-13;9!UBERON:0001917;3.95e-13;9!UBERON:0005800;1.48e-10;2!UBERON:0001515;1.48e-10;2!UBERON:0001473;6.83e-10;8!UBERON:0004536;6.83e-10;8!UBERON:0006558;6.83e-10;8!UBERON:0000490;3.59e-09;33!UBERON:0001638;7.79e-09;9!UBERON:0003920;7.79e-09;9!UBERON:0004582;7.79e-09;9!UBERON:0002465;6.25e-08;10|ontology_enrichment_uberon_v019_2=UBERON:0002405,2.74e-30,93;UBERON:0002371,9.68e-27,76;UBERON:0002193,2.61e-25,108;UBERON:0001474,1.94e-24,82;UBERON:0004765,7.66e-22,90;UBERON:0004638,2.03e-20,18;UBERON:0001986,2.03e-20,18;UBERON:0004852,2.03e-20,18;UBERON:0003081,8.71e-20,203;UBERON:0002390,1.15e-19,98;UBERON:0003061,1.15e-19,98;UBERON:0001434,3.54e-19,100;UBERON:0000487,2.00e-16,22;UBERON:0006914,2.86e-14,25;UBERON:0003915,2.31e-13,9;UBERON:0004700,2.31e-13,9;UBERON:0001917,2.31e-13,9;UBERON:0000926,3.29e-11,315;UBERON:0004120,3.29e-11,315;UBERON:0006603,3.29e-11,315;UBERON:0005800,8.65e-11,2;UBERON:0001515,8.65e-11,2;UBERON:0001473,7.10e-10,8;UBERON:0004536,7.10e-10,8;UBERON:0006558,7.10e-10,8;UBERON:0002204,1.50e-09,167;UBERON:0000055,2.38e-09,68;UBERON:0001638,6.47e-09,9;UBERON:0003920,6.47e-09,9;UBERON:0004582,6.47e-09,9;UBERON:0002465,6.44e-08,10;UBERON:0002049,8.02e-08,78;UBERON:0007798,8.02e-08,78|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0.572471974262113,0,0.627713197974014,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.802177789880567,0.217010870715852,0.447830948479849,0,0.257575567634187,0,0,0.242584061187816,0.464858073811369,0.411167888021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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_at_chr1:39570134..39570169,+ | |||
|id=chr1:39570134..39570169,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.01e-23!24;CL:0002057!4.70e-21!42;CL:0002009!2.31e-20!65;CL:0000115!3.31e-20!35;CL:0000860!5.59e-19!45;CL:0002194!2.19e-18!63;CL:0000576!2.19e-18!63;CL:0000040!2.19e-18!63;CL:0000559!2.19e-18!63;CL:0000557!1.31e-17!71;CL:0002078!6.16e-17!44;CL:0000071!7.04e-16!18;CL:0002546!7.04e-16!18;CL:0000213!1.42e-15!57;CL:0000215!1.42e-15!57;CL:0000839!2.05e-15!70;CL:0000766!2.48e-13!76;CL:0002543!3.75e-09!6;CL:0005020!5.02e-09!6;CL:0002138!5.02e-09!6;CL:0005022!5.02e-09!6;CL:0000763!3.51e-07!112;CL:0000049!3.51e-07!112;CL:0002087!6.85e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.19e-46;33!CL:0002057;7.19e-46;33!CL:0000473;1.90e-36;39!CL:0000234;1.90e-36;39!CL:0002139;4.10e-31;24!CL:0000576;9.68e-22;48!CL:0000115;9.62e-21;36!CL:0000071;4.05e-20;18!CL:0002543;3.38e-13;6!CL:0002138;3.78e-13;6!CL:1000413;3.95e-13;9!CL:0000766;1.69e-12;69!CL:0002078;6.84e-12;45!CL:0001014;5.79e-11;2!CL:0001016;5.79e-11;2!CL:0002545;1.48e-10;2!CL:0000213;1.95e-09;58!CL:0000215;1.95e-09;58!CL:0000763;8.09e-08;100!CL:0002544;9.97e-08;6!CL:0002618;2.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.46e-39,42;CL:0002057,2.46e-39,42;CL:0000473,1.35e-37,48;CL:0000234,1.35e-37,48;CL:0002009,1.90e-34,61;CL:0002139,2.01e-31,24;CL:0000557,5.89e-31,67;CL:0002194,3.84e-29,59;CL:0000576,3.84e-29,59;CL:0000040,3.84e-29,59;CL:0000559,3.84e-29,59;CL:0000839,1.31e-25,66;CL:0000115,2.17e-23,36;CL:0000766,4.01e-23,72;CL:0000071,2.03e-20,18;CL:0002546,2.03e-20,18;CL:0002078,4.13e-18,45;CL:0000763,2.13e-17,108;CL:0000049,2.13e-17,108;CL:0002031,3.56e-15,120;CL:0000213,2.20e-13,58;CL:0000215,2.20e-13,58;CL:1000413,2.31e-13,9;CL:0002543,2.54e-13,6;CL:0005020,3.98e-13,6;CL:0002138,3.98e-13,6;CL:0005022,3.98e-13,6;CL:0002087,7.48e-13,115;CL:0000738,8.05e-13,136;CL:0001014,4.30e-11,2;CL:0001016,4.30e-11,2;CL:0002545,8.65e-11,2;CL:0002032,4.38e-10,161;CL:0000837,4.38e-10,161;CL:0000037,1.82e-09,168;CL:0000988,9.59e-09,177;CL:0002544,6.13e-08,6;CL:0002618,2.85e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;7.62e-29;42!CL:0002546;4.05e-20;18!CL:0005022;3.78e-13;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.56e-16!112;UBERON:0001986!7.04e-16!18;UBERON:0004638!7.04e-16!18;UBERON:0004852!7.04e-16!18;UBERON:0002371!2.89e-15!80;UBERON:0001474!2.26e-14!86;UBERON:0002405!2.48e-14!115;UBERON:0003081!3.67e-14!216;UBERON:0002390!4.13e-12!102;UBERON:0003061!4.13e-12!102;UBERON:0000487!4.34e-12!22;UBERON:0004765!6.39e-12!101;UBERON:0001434!6.39e-12!101;UBERON:0006914!2.11e-11!25;UBERON:0000467!4.64e-10!625;UBERON:0000480!5.54e-10!626;UBERON:0000468!2.12e-09!659;UBERON:0000055!1.76e-08!69;UBERON:0000922!7.54e-08!612;UBERON:0002049!1.29e-07!79;UBERON:0007798!1.29e-07!79;UBERON:0000923!3.37e-07!604;UBERON:0005291!3.37e-07!604;UBERON:0006598!3.37e-07!604;UBERON:0002532!3.37e-07!604;UBERON:0002050!3.93e-07!605;UBERON:0005423!3.93e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.05e-20;18!UBERON:0001986;4.05e-20;18!UBERON:0004852;4.05e-20;18!UBERON:0000487;3.48e-16;22!UBERON:0006914;4.64e-14;25!UBERON:0003915;3.95e-13;9!UBERON:0004700;3.95e-13;9!UBERON:0001917;3.95e-13;9!UBERON:0005800;1.48e-10;2!UBERON:0001515;1.48e-10;2!UBERON:0001473;6.83e-10;8!UBERON:0004536;6.83e-10;8!UBERON:0006558;6.83e-10;8!UBERON:0000490;3.59e-09;33!UBERON:0001638;7.79e-09;9!UBERON:0003920;7.79e-09;9!UBERON:0004582;7.79e-09;9!UBERON:0002465;6.25e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,2.74e-30,93;UBERON:0002371,9.68e-27,76;UBERON:0002193,2.61e-25,108;UBERON:0001474,1.94e-24,82;UBERON:0004765,7.66e-22,90;UBERON:0004638,2.03e-20,18;UBERON:0001986,2.03e-20,18;UBERON:0004852,2.03e-20,18;UBERON:0003081,8.71e-20,203;UBERON:0002390,1.15e-19,98;UBERON:0003061,1.15e-19,98;UBERON:0001434,3.54e-19,100;UBERON:0000487,2.00e-16,22;UBERON:0006914,2.86e-14,25;UBERON:0003915,2.31e-13,9;UBERON:0004700,2.31e-13,9;UBERON:0001917,2.31e-13,9;UBERON:0000926,3.29e-11,315;UBERON:0004120,3.29e-11,315;UBERON:0006603,3.29e-11,315;UBERON:0005800,8.65e-11,2;UBERON:0001515,8.65e-11,2;UBERON:0001473,7.10e-10,8;UBERON:0004536,7.10e-10,8;UBERON:0006558,7.10e-10,8;UBERON:0002204,1.50e-09,167;UBERON:0000055,2.38e-09,68;UBERON:0001638,6.47e-09,9;UBERON:0003920,6.47e-09,9;UBERON:0004582,6.47e-09,9;UBERON:0002465,6.44e-08,10;UBERON:0002049,8.02e-08,78;UBERON:0007798,8.02e-08,78 | |||
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|short_description=p@chr1:39570134..39570169,+ | |||
}} |
Revision as of 05:37, 12 September 2013
Short description: | p@chr1:39570134..39570169, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:39570134..39570169, + |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immune system | 2.74e-30 | 93 |
bone marrow | 9.68e-27 | 76 |
hemolymphoid system | 2.61e-25 | 108 |
bone element | 1.94e-24 | 82 |
skeletal element | 7.66e-22 | 90 |
blood vessel endothelium | 2.03e-20 | 18 |
endothelium | 2.03e-20 | 18 |
cardiovascular system endothelium | 2.03e-20 | 18 |
lateral plate mesoderm | 8.71e-20 | 203 |
hematopoietic system | 1.15e-19 | 98 |
blood island | 1.15e-19 | 98 |
skeletal system | 3.54e-19 | 100 |
simple squamous epithelium | 2.00e-16 | 22 |
squamous epithelium | 2.86e-14 | 25 |
endothelial tube | 2.31e-13 | 9 |
arterial system endothelium | 2.31e-13 | 9 |
endothelium of artery | 2.31e-13 | 9 |
mesoderm | 3.29e-11 | 315 |
mesoderm-derived structure | 3.29e-11 | 315 |
presumptive mesoderm | 3.29e-11 | 315 |
segment of aorta | 8.65e-11 | 2 |
thoracic aorta | 8.65e-11 | 2 |
lymphatic vessel | 7.10e-10 | 8 |
lymph vasculature | 7.10e-10 | 8 |
lymphatic part of lymphoid system | 7.10e-10 | 8 |
musculoskeletal system | 1.50e-09 | 167 |
vessel | 2.38e-09 | 68 |
vein | 6.47e-09 | 9 |
venous blood vessel | 6.47e-09 | 9 |
venous system | 6.47e-09 | 9 |
lymphoid system | 6.44e-08 | 10 |
vasculature | 8.02e-08 | 78 |
vascular system | 8.02e-08 | 78 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.