FFCP PHASE1:Mm9::chr11:52096804..52096896,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21414|HGNC=|MCL_coexpression_id=4|UniProt=G3X9G5|association_with_transcript=-123bp_to_ENSMUST00000072425_5end|description=CAGE_peak_1_at_Tcf7_5end|id=chr11:52096804..52096896,-|ontology_enrichment_celltype=CL:0000791!9.02e-07!9;CL:0000789!9.02e-07!9;CL:0002420!9.02e-07!9;CL:0002419!9.02e-07!9;CL:0000790!9.02e-07!9|ontology_enrichment_celltype_v019_2=CL:0000791,8.93e-07,9;CL:0000789,8.93e-07,9;CL:0002420,8.93e-07,9;CL:0002419,8.93e-07,9;CL:0000790,8.93e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000065!5.69e-16!41;UBERON:0001004!1.58e-15!42;UBERON:0004177!4.69e-12!29;UBERON:0002370!1.57e-11!23;UBERON:0000974!1.57e-11!23;UBERON:0004807!1.57e-11!23;UBERON:0005058!1.57e-11!23;UBERON:0003351!1.57e-11!23;UBERON:0009113!1.57e-11!23;UBERON:0003295!1.57e-11!23;UBERON:0009722!1.57e-11!23;UBERON:0005562!1.57e-11!23;UBERON:0007690!1.57e-11!23;UBERON:0006562!2.70e-11!24;UBERON:0001557!2.70e-11!24;UBERON:0001042!2.70e-11!24;UBERON:0008814!2.70e-11!24;UBERON:0009145!2.70e-11!24;UBERON:0003408!5.43e-11!24;UBERON:0000464!5.51e-11!57;UBERON:0000072!6.70e-10!27;UBERON:0001048!1.62e-07!147;UBERON:0005157!1.91e-07!27;UBERON:0002048!4.04e-07!14;UBERON:0000117!4.04e-07!14;UBERON:0000171!4.04e-07!14;UBERON:0000170!4.04e-07!14;UBERON:0005597!4.04e-07!14;UBERON:0000118!4.04e-07!14;UBERON:0003886!4.51e-07!38;UBERON:0000991!5.52e-07!18;UBERON:0005564!5.52e-07!18;UBERON:0002553!7.48e-07!39;UBERON:0001041!9.45e-07!92;UBERON:0003104!9.53e-07!131;UBERON:0009142!9.53e-07!131|ontology_enrichment_uberon_v019_2=UBERON:0000065,5.06e-16,41;UBERON:0001004,1.41e-15,42;UBERON:0004177,4.21e-12,29;UBERON:0005057,4.21e-12,29;UBERON:0002370,1.40e-11,23;UBERON:0000974,1.40e-11,23;UBERON:0004807,1.40e-11,23;UBERON:0005058,1.40e-11,23;UBERON:0003351,1.40e-11,23;UBERON:0009113,1.40e-11,23;UBERON:0003295,1.40e-11,23;UBERON:0009722,1.40e-11,23;UBERON:0005562,1.40e-11,23;UBERON:0007690,1.40e-11,23;UBERON:0006562,2.41e-11,24;UBERON:0001557,2.41e-11,24;UBERON:0001042,2.41e-11,24;UBERON:0008814,2.41e-11,24;UBERON:0009145,2.41e-11,24;UBERON:0003408,4.86e-11,24;UBERON:0000072,6.07e-10,27;UBERON:0000077,1.25e-09,35;UBERON:0000153,3.70e-08,43;UBERON:0007811,1.83e-07,36;UBERON:0002048,4.00e-07,14;UBERON:0000117,4.00e-07,14;UBERON:0000171,4.00e-07,14;UBERON:0000170,4.00e-07,14;UBERON:0005597,4.00e-07,14;UBERON:0000118,4.00e-07,14;UBERON:0003886,4.47e-07,38;UBERON:0000991,5.46e-07,18;UBERON:0005564,5.46e-07,18;UBERON:0002553,7.40e-07,39|phase1_expression=14.2532473923267,0,0,0.30246421130683,1.50268718983904,1.84667199103079,2.33612640595526,121.892417328848,146.279482315582,150.26942589872,49.1395568807199,53.2080300498894,343.771065701861,304.135580015692,4.99664642723494,7.49158489342356,1.39912375625629,23.9751245672261,20.1558217400436,10.1853516431527,23.216818211242,20.6525178497841,4.4403964153619,2.55987876469451,2.75291137280604,1.14846392823004,0,0.430942465371778,1.33016393619462,2.77233142735924,0.886922042621219,7.62036808151557,3.69038872550742,0,7.22129049378186,8.47796691328311,9.80012910059372,0,0,0,0.588231488031014,0,0,1.25896817975577,1.31790010585369,1.83546752161682,7.82391344348039,5.88667922227206,32.9529274101708,18.2764105129826,14.6985742706631,11.5002051491977,2.01339127269284,332.215861041196,305.845357219642,1.28629718017973,0,0.515672092277442,2.83243045203437,3.70293685490423,7.60597684207415,9.4876468979357,8.00365316500025,0,0,0,13.4820049733282,8.83702102239575,4.66603255388149,4.05017814995072,4.20649922702764,3.42781181284564,6.40518768759679,2.81728838194394,2.1086003624012,5.51531271966013,1.10115880999389,3.70293280447044,2.76491759861238,3.42904348098504,3.01909223887952,2.6045668527838,3.35019598801657,1.12552522006336,2.13917546887534,5.59794312399969,6.40672563595963,5.21918448310842,6.81535739998656,4.1564358058732,2.02905142091174,1.72084775396277,2.719885334831,1.61910957491345,1.29955283489534,0.448026887097336,17.2746636762055,0,0,0.35333957451034,7.04217098883402,2.56652954828636,0,14.2213340630666,6.061749148314,6.08063677140237,4.54972000513305,19.1828917928021,158.987860559363,37.1105347662062,22.2061218260654,24.0527727866592,27.673859670727,20.4982791151567,34.1007250693544,24.379318717957,1.23597483867187,3.18118585223806,6.19227386364912,14.5590164952668,9.93786833071771,10.6672555689749,1.86391761218122,1.17112318804619,1.25668024088073,5.8755122697976,0.479260498023681,0,0.127070227073065,2.39665023047716,4.11750542536764,4.02093926761166,1.56441888173049,2.55715457330331,2.49345653471472,3.24482526135515,16.8034950353022,21.5224059155461,52.819056512638,2.31486041475121,8.71806967850115,4.59804208866946,7.38254732201932,5.87748789559289,6.46346741937615,4.22775276940004,4.49768277886698,3.62184719034622,22.6346392579484,9.45530400839096,8.09375171154165,8.11024209982027,8.61946472599353,14.626590993931,16.0510066398196,21.4957008163973,0,0.257347907114715,0.284163499395593,7.24940203874257,6.80125573945179,3.96136535214233,6.155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| ||
|EntrezGene=21414 | |||
|HGNC= | |||
|MCL_coexpression_id=4 | |||
|UniProt=G3X9G5 | |||
|association_with_transcript=-123bp_to_ENSMUST00000072425_5end | |||
|description=CAGE_peak_1_at_Tcf7_5end | |||
|id=chr11:52096804..52096896,- | |||
|ontology_enrichment_celltype=CL:0000791!9.02e-07!9;CL:0000789!9.02e-07!9;CL:0002420!9.02e-07!9;CL:0002419!9.02e-07!9;CL:0000790!9.02e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.93e-07,9;CL:0000789,8.93e-07,9;CL:0002420,8.93e-07,9;CL:0002419,8.93e-07,9;CL:0000790,8.93e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000065!5.69e-16!41;UBERON:0001004!1.58e-15!42;UBERON:0004177!4.69e-12!29;UBERON:0002370!1.57e-11!23;UBERON:0000974!1.57e-11!23;UBERON:0004807!1.57e-11!23;UBERON:0005058!1.57e-11!23;UBERON:0003351!1.57e-11!23;UBERON:0009113!1.57e-11!23;UBERON:0003295!1.57e-11!23;UBERON:0009722!1.57e-11!23;UBERON:0005562!1.57e-11!23;UBERON:0007690!1.57e-11!23;UBERON:0006562!2.70e-11!24;UBERON:0001557!2.70e-11!24;UBERON:0001042!2.70e-11!24;UBERON:0008814!2.70e-11!24;UBERON:0009145!2.70e-11!24;UBERON:0003408!5.43e-11!24;UBERON:0000464!5.51e-11!57;UBERON:0000072!6.70e-10!27;UBERON:0001048!1.62e-07!147;UBERON:0005157!1.91e-07!27;UBERON:0002048!4.04e-07!14;UBERON:0000117!4.04e-07!14;UBERON:0000171!4.04e-07!14;UBERON:0000170!4.04e-07!14;UBERON:0005597!4.04e-07!14;UBERON:0000118!4.04e-07!14;UBERON:0003886!4.51e-07!38;UBERON:0000991!5.52e-07!18;UBERON:0005564!5.52e-07!18;UBERON:0002553!7.48e-07!39;UBERON:0001041!9.45e-07!92;UBERON:0003104!9.53e-07!131;UBERON:0009142!9.53e-07!131 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,5.06e-16,41;UBERON:0001004,1.41e-15,42;UBERON:0004177,4.21e-12,29;UBERON:0005057,4.21e-12,29;UBERON:0002370,1.40e-11,23;UBERON:0000974,1.40e-11,23;UBERON:0004807,1.40e-11,23;UBERON:0005058,1.40e-11,23;UBERON:0003351,1.40e-11,23;UBERON:0009113,1.40e-11,23;UBERON:0003295,1.40e-11,23;UBERON:0009722,1.40e-11,23;UBERON:0005562,1.40e-11,23;UBERON:0007690,1.40e-11,23;UBERON:0006562,2.41e-11,24;UBERON:0001557,2.41e-11,24;UBERON:0001042,2.41e-11,24;UBERON:0008814,2.41e-11,24;UBERON:0009145,2.41e-11,24;UBERON:0003408,4.86e-11,24;UBERON:0000072,6.07e-10,27;UBERON:0000077,1.25e-09,35;UBERON:0000153,3.70e-08,43;UBERON:0007811,1.83e-07,36;UBERON:0002048,4.00e-07,14;UBERON:0000117,4.00e-07,14;UBERON:0000171,4.00e-07,14;UBERON:0000170,4.00e-07,14;UBERON:0005597,4.00e-07,14;UBERON:0000118,4.00e-07,14;UBERON:0003886,4.47e-07,38;UBERON:0000991,5.46e-07,18;UBERON:0005564,5.46e-07,18;UBERON:0002553,7.40e-07,39 | |||
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| |||
|short_description=p1@Tcf7 | |||
}} |
Revision as of 19:55, 12 September 2013
Short description: | p1@Tcf7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tcf7_5end |
Coexpression cluster: | MCL_coexpression_mm9:4 |
Association with transcript: | -123bp_to_ENSMUST00000072425_5end |
EntrezGene: | Tcf7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.93e-07 | 9 |
alpha-beta T cell | 8.93e-07 | 9 |
immature T cell | 8.93e-07 | 9 |
mature T cell | 8.93e-07 | 9 |
immature alpha-beta T cell | 8.93e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
respiratory tract | 5.06e-16 | 41 |
respiratory system | 1.41e-15 | 42 |
hemopoietic organ | 4.21e-12 | 29 |
immune organ | 4.21e-12 | 29 |
thymus | 1.40e-11 | 23 |
neck | 1.40e-11 | 23 |
respiratory system epithelium | 1.40e-11 | 23 |
hemolymphoid system gland | 1.40e-11 | 23 |
pharyngeal epithelium | 1.40e-11 | 23 |
thymic region | 1.40e-11 | 23 |
pharyngeal gland | 1.40e-11 | 23 |
entire pharyngeal arch endoderm | 1.40e-11 | 23 |
thymus primordium | 1.40e-11 | 23 |
early pharyngeal endoderm | 1.40e-11 | 23 |
pharynx | 2.41e-11 | 24 |
upper respiratory tract | 2.41e-11 | 24 |
chordate pharynx | 2.41e-11 | 24 |
pharyngeal arch system | 2.41e-11 | 24 |
pharyngeal region of foregut | 2.41e-11 | 24 |
gland of gut | 4.86e-11 | 24 |
segment of respiratory tract | 6.07e-10 | 27 |
mixed endoderm/mesoderm-derived structure | 1.25e-09 | 35 |
anterior region of body | 3.70e-08 | 43 |
craniocervical region | 1.83e-07 | 36 |
lung | 4.00e-07 | 14 |
respiratory tube | 4.00e-07 | 14 |
respiration organ | 4.00e-07 | 14 |
pair of lungs | 4.00e-07 | 14 |
lung primordium | 4.00e-07 | 14 |
lung bud | 4.00e-07 | 14 |
body cavity precursor | 4.47e-07 | 38 |
gonad | 5.46e-07 | 18 |
gonad primordium | 5.46e-07 | 18 |
anatomical cavity | 7.40e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.