FFCP PHASE1:Mm9::chr14:68334152..68334181,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=105440|HGNC=|MCL_coexpression_id=20|UniProt=Q80UN1,E9PUA6|association_with_transcript=0bp_to_ENSMUST00000078053,NM_001111028,NM_134073,uc007ulf.2,uc007ulg.2,uc011znv.1_5end|description=CAGE_peak_3_at_Kctd9_5end|id=chr14:68334152..68334181,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002610,7.05e-09,3;CL:0002614,1.05e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.18e-09!63;UBERON:0002346!2.28e-07!71;UBERON:0003075!2.28e-07!71;UBERON:0007284!2.28e-07!71;UBERON:0000955!3.62e-07!50;UBERON:0006238!3.62e-07!50;UBERON:0002616!9.26e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.12e-13,54;UBERON:0000955,1.73e-12,47;UBERON:0006238,1.73e-12,47;UBERON:0002616,2.43e-11,46;UBERON:0001017,2.83e-11,73;UBERON:0001049,4.68e-11,52;UBERON:0005068,4.68e-11,52;UBERON:0006241,4.68e-11,52;UBERON:0007135,4.68e-11,52;UBERON:0002950,6.46e-11,4;UBERON:0001891,6.46e-11,4;UBERON:0009616,6.46e-11,4;UBERON:0010286,6.46e-11,4;UBERON:0001016,7.78e-11,75;UBERON:0002346,2.98e-09,64;UBERON:0003075,2.98e-09,64;UBERON:0007284,2.98e-09,64;UBERON:0004684,7.05e-09,3;UBERON:0002275,7.05e-09,3;UBERON:0002038,1.05e-08,3;UBERON:0009663,1.05e-08,3;UBERON:0009661,1.05e-08,3;UBERON:0000125,1.05e-08,3;UBERON:0002308,1.05e-08,3;UBERON:0004121,2.48e-08,95;UBERON:0000924,2.48e-08,95;UBERON:0006601,2.48e-08,95;UBERON:0010371,1.41e-07,73;UBERON:0003080,2.48e-07,40;UBERON:0004733,6.69e-07,6;UBERON:0004732,6.69e-07,6;UBERON:0002028,6.69e-07,6;UBERON:0007277,6.69e-07,6|phase1_expression=0.640595388419176,0.697950815278722,0,0.90739263392049,2.00358291978539,0.671517087647559,0.233612640595526,0.129123323441576,0,0,0.34243593645101,0.0797721589953364,0.171200729931206,0.0874204024189974,0.666219523631325,0.404950534779652,0.699561878128147,0.315462165358238,0,0,0.850432901510698,0.198581902401771,0,0.159992422793407,0,0.57423196411502,0,0.430942465371778,0.190023419456374,0,0,0.635030673459631,0.61506478758457,0,0.288851619751275,0,0,0,0.7813353445238,0,1.17646297606203,1.36609096991689,0.485510353031154,0.125896817975577,0.101376931219515,0.183546752161682,0,0,0.219686182734472,0.972149495371417,0.139986421625363,0,0.167782606057736,0.725362142011344,0,0.257259436035947,0,0,0.606949382578793,0.528990979272033,0,0.338844532069132,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.420649922702764,0.856952953211411,0.662605622854841,0.367472397644862,0.670918297127655,1.83843757322004,8.8092704799511,5.87361755191863,4.6081959976873,0.923204014111357,0.731901148819277,1.04182674111352,6.97957497503452,5.06486349028512,3.0559649555362,0.883885756421003,0.854230084794618,0.186399445825301,0.454357159999104,0.453429360640713,0,0,0,1.07940638327563,0.649776417447669,0,0.983110940922263,0.170430322578058,0,0.70667914902068,0.281686839553361,0,0,0,0,0.253359865475099,0,0.5709193985953,0.517875767294343,0.29688427812965,0.346970653532272,0,0.461230994512117,0.753613202763113,0.23517741427141,0.251333182659351,0.988779870937496,0.578397427679647,0,0.485300549842228,0.883366073841574,1.45462575940567,1.86391761218122,1.46390398505774,1.67557365450764,0.255457055208591,0,0,0.254140454146129,2.54644086988199,0.915001205637253,0.376963056338593,0.695297280769106,0.767146371990992,1.66230435647648,3.0825839982874,0.203678727700633,0.497627882440372,0.505445516867349,0.631325567659422,0.780722657776222,0.919608417733892,0.360124259610698,0.753524089178575,0.408218994907967,0.640568601424249,1.12442069471675,0.776110112217047,0.215567992932842,0.756424320671277,0.351902248327898,0.657587197282725,0.834141747676794,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0.828503090142008,0.938104239924385,0.180062061461015,0.23674473558521,0.393528463494808,0.462801338662135,0,1.07309360559848,0.467061369468678,0.658239399653922,0.820837320395476,0.729619285912702,1.16959989940266,0.658650345873152,0.939444931322602,1.26173969138476,0.308713837137853,0.330418782983798,0.264450566663544,0.213288250535234,0.232236671860439,0.128867461322093,0.403367049246685,0.444756087689741,0.190225626112559,0.474529061544512,0,0.251335208800269,0.198956472041151,0,0,0.216138049874694,0.398282546508734,0.189667900953082,0,2.25415471346161,0.407302655690628,0.387904974335251,0.49095073923223,0.379419222745544,0.295220295959204,0.470996183524124,0.370191491765402,0,0.166845105716094,0,0,0,0.482354319504834,0.25462585178142,0.287696137450811,0.486405680325106,0,0,0,0,0,0.538192240565737,0,0.184753190166605,0.568474235311454,0.325929952884052,0.339490171550376,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0.630540576424764,0,0.478364305972461,0.327726629431476,0,0,0,0,0,0,5.13761887960934,4.45404409050372,0.163934945376675,0.757412781613119,0.315508219416257,0,0.646270193198397,0,0,0,0.809621403349789,0,0.395287777946524,1.28528526568723,0.709700426041343,0.178065603667255,0.651547837414304,0.329940245945071,0,0.242780636154981,0,0.565815239267694,0.590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| ||
|EntrezGene=105440 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=Q80UN1,E9PUA6 | |||
|association_with_transcript=0bp_to_ENSMUST00000078053,NM_001111028,NM_134073,uc007ulf.2,uc007ulg.2,uc011znv.1_5end | |||
|description=CAGE_peak_3_at_Kctd9_5end | |||
|id=chr14:68334152..68334181,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,7.05e-09,3;CL:0002614,1.05e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.18e-09!63;UBERON:0002346!2.28e-07!71;UBERON:0003075!2.28e-07!71;UBERON:0007284!2.28e-07!71;UBERON:0000955!3.62e-07!50;UBERON:0006238!3.62e-07!50;UBERON:0002616!9.26e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.12e-13,54;UBERON:0000955,1.73e-12,47;UBERON:0006238,1.73e-12,47;UBERON:0002616,2.43e-11,46;UBERON:0001017,2.83e-11,73;UBERON:0001049,4.68e-11,52;UBERON:0005068,4.68e-11,52;UBERON:0006241,4.68e-11,52;UBERON:0007135,4.68e-11,52;UBERON:0002950,6.46e-11,4;UBERON:0001891,6.46e-11,4;UBERON:0009616,6.46e-11,4;UBERON:0010286,6.46e-11,4;UBERON:0001016,7.78e-11,75;UBERON:0002346,2.98e-09,64;UBERON:0003075,2.98e-09,64;UBERON:0007284,2.98e-09,64;UBERON:0004684,7.05e-09,3;UBERON:0002275,7.05e-09,3;UBERON:0002038,1.05e-08,3;UBERON:0009663,1.05e-08,3;UBERON:0009661,1.05e-08,3;UBERON:0000125,1.05e-08,3;UBERON:0002308,1.05e-08,3;UBERON:0004121,2.48e-08,95;UBERON:0000924,2.48e-08,95;UBERON:0006601,2.48e-08,95;UBERON:0010371,1.41e-07,73;UBERON:0003080,2.48e-07,40;UBERON:0004733,6.69e-07,6;UBERON:0004732,6.69e-07,6;UBERON:0002028,6.69e-07,6;UBERON:0007277,6.69e-07,6 | |||
|phase1_expression=0.640595388419176,0.697950815278722,0,0.90739263392049,2.00358291978539,0.671517087647559,0.233612640595526,0.129123323441576,0,0,0.34243593645101,0.0797721589953364,0.171200729931206,0.0874204024189974,0.666219523631325,0.404950534779652,0.699561878128147,0.315462165358238,0,0,0.850432901510698,0.198581902401771,0,0.159992422793407,0,0.57423196411502,0,0.430942465371778,0.190023419456374,0,0,0.635030673459631,0.61506478758457,0,0.288851619751275,0,0,0,0.7813353445238,0,1.17646297606203,1.36609096991689,0.485510353031154,0.125896817975577,0.101376931219515,0.183546752161682,0,0,0.219686182734472,0.972149495371417,0.139986421625363,0,0.167782606057736,0.725362142011344,0,0.257259436035947,0,0,0.606949382578793,0.528990979272033,0,0.338844532069132,0,0,0,0,0,0,0.414758449233911,0.270011876663381,0.420649922702764,0.856952953211411,0.662605622854841,0.367472397644862,0.670918297127655,1.83843757322004,8.8092704799511,5.87361755191863,4.6081959976873,0.923204014111357,0.731901148819277,1.04182674111352,6.97957497503452,5.06486349028512,3.0559649555362,0.883885756421003,0.854230084794618,0.186399445825301,0.454357159999104,0.453429360640713,0,0,0,1.07940638327563,0.649776417447669,0,0.983110940922263,0.170430322578058,0,0.70667914902068,0.281686839553361,0,0,0,0,0.253359865475099,0,0.5709193985953,0.517875767294343,0.29688427812965,0.346970653532272,0,0.461230994512117,0.753613202763113,0.23517741427141,0.251333182659351,0.988779870937496,0.578397427679647,0,0.485300549842228,0.883366073841574,1.45462575940567,1.86391761218122,1.46390398505774,1.67557365450764,0.255457055208591,0,0,0.254140454146129,2.54644086988199,0.915001205637253,0.376963056338593,0.695297280769106,0.767146371990992,1.66230435647648,3.0825839982874,0.203678727700633,0.497627882440372,0.505445516867349,0.631325567659422,0.780722657776222,0.919608417733892,0.360124259610698,0.753524089178575,0.408218994907967,0.640568601424249,1.12442069471675,0.776110112217047,0.215567992932842,0.756424320671277,0.351902248327898,0.657587197282725,0.834141747676794,0.348252166522167,0.411564272815887,0.199034266818493,0,0,0,0.828503090142008,0.938104239924385,0.180062061461015,0.23674473558521,0.393528463494808,0.462801338662135,0,1.07309360559848,0.467061369468678,0.658239399653922,0.820837320395476,0.729619285912702,1.16959989940266,0.658650345873152,0.939444931322602,1.26173969138476,0.308713837137853,0.330418782983798,0.264450566663544,0.213288250535234,0.232236671860439,0.128867461322093,0.403367049246685,0.444756087689741,0.190225626112559,0.474529061544512,0,0.251335208800269,0.198956472041151,0,0,0.216138049874694,0.398282546508734,0.189667900953082,0,2.25415471346161,0.407302655690628,0.387904974335251,0.49095073923223,0.379419222745544,0.295220295959204,0.470996183524124,0.370191491765402,0,0.166845105716094,0,0,0,0.482354319504834,0.25462585178142,0.287696137450811,0.486405680325106,0,0,0,0,0,0.538192240565737,0,0.184753190166605,0.568474235311454,0.325929952884052,0.339490171550376,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0.630540576424764,0,0.478364305972461,0.327726629431476,0,0,0,0,0,0,5.13761887960934,4.45404409050372,0.163934945376675,0.757412781613119,0.315508219416257,0,0.646270193198397,0,0,0,0.809621403349789,0,0.395287777946524,1.28528526568723,0.709700426041343,0.178065603667255,0.651547837414304,0.329940245945071,0,0.242780636154981,0,0.565815239267694,0.590603785761546,0,0.258428293168221,0,0,0.316036757935816,0,0,1.36175842301515,0.720244376125241,0.129358683782755,0.428674070063185,0.354680467284547,0.356737635204141,0.329098041204242,0,0.938686832254841,0.42366414172764,0.661585194164886,0.32977250588296,0.161464426695906,0.241251699712623,0.358117032009409,0.820704498725306,0.291480836629851,5.37733375830478,0.512612642393558,0,0.185194527369712,0.565105371014073,0.27338845544205,0.457556346413045,0,0.139951452323658,0,0,0.158167996790568,0,0.108005340821801,0,0,0.404593039154462,0.165306911450672,0.785267825952089,0,0,1.12738587736838,0.598066184175915,0.165458490457098,0.388902376688095,0.387479470433193,0.337912250981556,0.704143431874524,1.0416350787516,0.943734099831398,2.65742532908607,1.15212002503146,0.316011120628178,0.405450430580328,0.102710957164827,0.25984164595559,0.179026695667481,0.39736270956253,0.120195449519969,0.147689527174577,0.201932899896295,0.457240839929999,0.504130925684203,0.584747284438515,0.0962118416403295,0,0.906921534460845,0,0.269141569828427,0.167884616364078,0,0.750729901804728,0.549454872801795,0.214368379079066,0.501572104035363,0,0.460325236507177,0,0.343706364687375,1.37016503954128,0,1.35004500046361,0.45032120322422,1.35942722695261,0,0.31136204275253,1.59609949360412,0.682934423016537,0.243106717068294,0.209613162627982,0.183843508450014,0.666740183404846,0.206035057238894,0.320919209591815,0.252697211763798,1.2673964994512,0.565879024158229,0.468207537349412,0.640251524048693,0.516919220600519,0.476293691283074,0.579421629724277,1.7361829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| |||
|short_description=p3@Kctd9 | |||
}} |
Revision as of 02:52, 13 September 2013
Short description: | p3@Kctd9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kctd9_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_ENSMUST00000078053, NM_001111028, NM_134073, uc007ulf.2, uc007ulg.2, uc011znv.1_5end |
EntrezGene: | Kctd9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 7.05e-09 | 3 |
neuron of the substantia nigra | 1.05e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.12e-13 | 54 |
brain | 1.73e-12 | 47 |
future brain | 1.73e-12 | 47 |
regional part of brain | 2.43e-11 | 46 |
central nervous system | 2.83e-11 | 73 |
neural tube | 4.68e-11 | 52 |
neural rod | 4.68e-11 | 52 |
future spinal cord | 4.68e-11 | 52 |
neural keel | 4.68e-11 | 52 |
regional part of midbrain | 6.46e-11 | 4 |
midbrain | 6.46e-11 | 4 |
presumptive midbrain | 6.46e-11 | 4 |
midbrain neural tube | 6.46e-11 | 4 |
nervous system | 7.78e-11 | 75 |
neurectoderm | 2.98e-09 | 64 |
neural plate | 2.98e-09 | 64 |
presumptive neural plate | 2.98e-09 | 64 |
raphe nuclei | 7.05e-09 | 3 |
reticular formation | 7.05e-09 | 3 |
substantia nigra | 1.05e-08 | 3 |
telencephalic nucleus | 1.05e-08 | 3 |
midbrain nucleus | 1.05e-08 | 3 |
neural nucleus | 1.05e-08 | 3 |
nucleus of brain | 1.05e-08 | 3 |
ectoderm-derived structure | 2.48e-08 | 95 |
ectoderm | 2.48e-08 | 95 |
presumptive ectoderm | 2.48e-08 | 95 |
ecto-epithelium | 1.41e-07 | 73 |
anterior neural tube | 2.48e-07 | 40 |
segmental subdivision of hindbrain | 6.69e-07 | 6 |
segmental subdivision of nervous system | 6.69e-07 | 6 |
hindbrain | 6.69e-07 | 6 |
presumptive hindbrain | 6.69e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.