FFCP PHASE1:Mm9::chr17:35138043..35138106,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22321|HGNC=|MCL_coexpression_id=0|UniProt=G3UY93|association_with_transcript=47bp_to_ENSMUST00000173584_5end|description=CAGE_peak_2_at_Vars_5end|id=chr17:35138043..35138106,+|ontology_enrichment_celltype=CL:0000988!1.26e-15!32;CL:0002032!1.26e-15!32;CL:0000037!1.26e-15!32;CL:0000566!1.26e-15!32;CL:0000837!1.26e-15!32;CL:0002031!9.00e-13!25;CL:0000049!2.03e-09!19;CL:0000763!4.17e-08!16;CL:0000738!1.92e-07!17;CL:0002087!1.92e-07!17;CL:0000542!2.31e-07!13;CL:0000051!2.31e-07!13;CL:0000838!2.89e-07!12;CL:0002320!3.36e-07!46;CL:0000134!3.36e-07!46;CL:0000050!5.51e-07!9;CL:0000839!7.61e-07!13|ontology_enrichment_celltype_v019_2=CL:0000988,1.26e-15,32;CL:0002032,1.26e-15,32;CL:0000037,1.26e-15,32;CL:0000837,1.26e-15,32;CL:0002031,9.00e-13,25;CL:0000049,2.03e-09,19;CL:0000763,4.17e-08,16;CL:0000738,1.92e-07,17;CL:0002087,1.92e-07,17;CL:0000542,2.31e-07,13;CL:0000051,2.31e-07,13;CL:0000838,2.89e-07,12;CL:0002320,3.36e-07,46;CL:0000134,3.36e-07,46;CL:0000050,5.51e-07,9;CL:0000839,7.61e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!6.13e-21!48;UBERON:0002390!6.50e-20!45;UBERON:0003061!6.50e-20!45;UBERON:0002405!2.45e-14!70;UBERON:0004177!1.12e-13!29;UBERON:0000072!1.05e-11!27;UBERON:0003408!3.49e-11!24;UBERON:0002370!4.46e-11!23;UBERON:0000974!4.46e-11!23;UBERON:0004807!4.46e-11!23;UBERON:0005058!4.46e-11!23;UBERON:0003351!4.46e-11!23;UBERON:0009113!4.46e-11!23;UBERON:0003295!4.46e-11!23;UBERON:0009722!4.46e-11!23;UBERON:0005562!4.46e-11!23;UBERON:0007690!4.46e-11!23;UBERON:0006562!1.18e-10!24;UBERON:0001557!1.18e-10!24;UBERON:0001042!1.18e-10!24;UBERON:0008814!1.18e-10!24;UBERON:0009145!1.18e-10!24;UBERON:0000063!9.79e-09!35;UBERON:0001041!6.06e-08!92;UBERON:0005057!9.66e-08!51;UBERON:0001004!3.35e-07!42;UBERON:0002384!3.36e-07!46;UBERON:0000065!4.95e-07!41;UBERON:0002371!4.99e-07!16;UBERON:0003081!8.79e-07!88|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.13e-21,48;UBERON:0002405,6.13e-21,48;UBERON:0002390,6.50e-20,45;UBERON:0003061,6.50e-20,45;UBERON:0004177,1.12e-13,29;UBERON:0005057,1.12e-13,29;UBERON:0000072,1.05e-11,27;UBERON:0003408,3.49e-11,24;UBERON:0002370,4.46e-11,23;UBERON:0000974,4.46e-11,23;UBERON:0004807,4.46e-11,23;UBERON:0005058,4.46e-11,23;UBERON:0003351,4.46e-11,23;UBERON:0009113,4.46e-11,23;UBERON:0003295,4.46e-11,23;UBERON:0009722,4.46e-11,23;UBERON:0005562,4.46e-11,23;UBERON:0007690,4.46e-11,23;UBERON:0006562,1.18e-10,24;UBERON:0001557,1.18e-10,24;UBERON:0001042,1.18e-10,24;UBERON:0008814,1.18e-10,24;UBERON:0009145,1.18e-10,24;UBERON:0000077,3.13e-09,35;UBERON:0001004,3.35e-07,42;UBERON:0002384,3.36e-07,46;UBERON:0000065,4.95e-07,41;UBERON:0002371,4.99e-07,16|phase1_expression=4.64431656603902,2.44282785347553,3.18499467572675,1.51232105653415,1.00179145989269,12.255186849568,14.4839837169226,31.8934608900693,36.8866452037367,36.982195158875,52.221480308779,50.3362323260573,24.8241058400248,21.5928393974924,37.9745128469855,30.7762406432535,62.261007153405,75.2377264379397,70.0654755725325,55.595044385542,92.0168399434575,22.3404640201992,15.9331871374751,17.5991665072747,14.4527847072317,4.59385571292016,6.8921919385452,9.26526300549323,4.75058548640935,5.79669298447841,13.7472916606289,74.2985887947768,54.1257013074422,31.6963362030877,13.8648777480612,14.4624141461888,18.3752420636132,5.02237956884289,8.5946887897618,5.75876118371178,2.35292595212406,3.41522742479223,4.36959317728038,5.66535680890098,7.29913904780505,5.87349606917381,9.38869613217647,8.72100625521786,6.81027166476863,6.41618666945135,4.89952475688769,12.9377307928474,57.5494338778036,26.1130371124084,37.9785993030984,4.88792928468299,5.15760191889762,5.67239301505187,11.3297218081375,10.5798195854407,7.60597684207415,4.74382344896785,2.66788438833342,10.7987966073768,28.6771245144423,22.7353636782752,12.583204641773,19.9793518767208,16.279269132431,17.1457541681247,14.7227472945967,10.5690864229407,7.95126747425809,11.8816075238505,12.9391385874619,19.3035945188104,13.2139057199266,9.44886301830389,8.60196586234964,8.96826756565318,8.5083508550241,6.77187381723788,13.6799669510677,5.06486349028512,8.55670187550137,7.36571463684169,5.97961059356232,10.9975673036927,14.1607981533054,9.74873125377533,6.66688324013859,3.44169550792555,3.39985666853875,3.77792234146472,5.84798775702902,3.58421509677868,22.8924404814756,8.862376774059,6.49465011507172,6.00677276667578,4.50698943285378,6.41632387071589,22.9324715735981,14.2213340630666,15.154372870785,21.2822286999083,28.8148933658426,20.3247305899927,31.3314839213078,6.38301197978747,15.9606500624845,9.13396434936424,6.6878494204257,4.97384713823654,6.34979018532806,7.28866229712118,2.71914464507811,5.35017620603673,14.153768831198,10.0295446967394,26.0592991783264,17.9403843660032,13.0474232852686,6.14839673724249,6.70229461803056,10.9846533739694,30.1934113754919,23.9961092397363,25.0328347333937,7.48953197024113,6.8625090422794,11.5602003943835,6.08385120672968,8.18289463457058,6.2336413367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| ||
|EntrezGene=22321 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=G3UY93 | |||
|association_with_transcript=47bp_to_ENSMUST00000173584_5end | |||
|description=CAGE_peak_2_at_Vars_5end | |||
|id=chr17:35138043..35138106,+ | |||
|ontology_enrichment_celltype=CL:0000988!1.26e-15!32;CL:0002032!1.26e-15!32;CL:0000037!1.26e-15!32;CL:0000566!1.26e-15!32;CL:0000837!1.26e-15!32;CL:0002031!9.00e-13!25;CL:0000049!2.03e-09!19;CL:0000763!4.17e-08!16;CL:0000738!1.92e-07!17;CL:0002087!1.92e-07!17;CL:0000542!2.31e-07!13;CL:0000051!2.31e-07!13;CL:0000838!2.89e-07!12;CL:0002320!3.36e-07!46;CL:0000134!3.36e-07!46;CL:0000050!5.51e-07!9;CL:0000839!7.61e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.26e-15,32;CL:0002032,1.26e-15,32;CL:0000037,1.26e-15,32;CL:0000837,1.26e-15,32;CL:0002031,9.00e-13,25;CL:0000049,2.03e-09,19;CL:0000763,4.17e-08,16;CL:0000738,1.92e-07,17;CL:0002087,1.92e-07,17;CL:0000542,2.31e-07,13;CL:0000051,2.31e-07,13;CL:0000838,2.89e-07,12;CL:0002320,3.36e-07,46;CL:0000134,3.36e-07,46;CL:0000050,5.51e-07,9;CL:0000839,7.61e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.13e-21!48;UBERON:0002390!6.50e-20!45;UBERON:0003061!6.50e-20!45;UBERON:0002405!2.45e-14!70;UBERON:0004177!1.12e-13!29;UBERON:0000072!1.05e-11!27;UBERON:0003408!3.49e-11!24;UBERON:0002370!4.46e-11!23;UBERON:0000974!4.46e-11!23;UBERON:0004807!4.46e-11!23;UBERON:0005058!4.46e-11!23;UBERON:0003351!4.46e-11!23;UBERON:0009113!4.46e-11!23;UBERON:0003295!4.46e-11!23;UBERON:0009722!4.46e-11!23;UBERON:0005562!4.46e-11!23;UBERON:0007690!4.46e-11!23;UBERON:0006562!1.18e-10!24;UBERON:0001557!1.18e-10!24;UBERON:0001042!1.18e-10!24;UBERON:0008814!1.18e-10!24;UBERON:0009145!1.18e-10!24;UBERON:0000063!9.79e-09!35;UBERON:0001041!6.06e-08!92;UBERON:0005057!9.66e-08!51;UBERON:0001004!3.35e-07!42;UBERON:0002384!3.36e-07!46;UBERON:0000065!4.95e-07!41;UBERON:0002371!4.99e-07!16;UBERON:0003081!8.79e-07!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.13e-21,48;UBERON:0002405,6.13e-21,48;UBERON:0002390,6.50e-20,45;UBERON:0003061,6.50e-20,45;UBERON:0004177,1.12e-13,29;UBERON:0005057,1.12e-13,29;UBERON:0000072,1.05e-11,27;UBERON:0003408,3.49e-11,24;UBERON:0002370,4.46e-11,23;UBERON:0000974,4.46e-11,23;UBERON:0004807,4.46e-11,23;UBERON:0005058,4.46e-11,23;UBERON:0003351,4.46e-11,23;UBERON:0009113,4.46e-11,23;UBERON:0003295,4.46e-11,23;UBERON:0009722,4.46e-11,23;UBERON:0005562,4.46e-11,23;UBERON:0007690,4.46e-11,23;UBERON:0006562,1.18e-10,24;UBERON:0001557,1.18e-10,24;UBERON:0001042,1.18e-10,24;UBERON:0008814,1.18e-10,24;UBERON:0009145,1.18e-10,24;UBERON:0000077,3.13e-09,35;UBERON:0001004,3.35e-07,42;UBERON:0002384,3.36e-07,46;UBERON:0000065,4.95e-07,41;UBERON:0002371,4.99e-07,16 | |||
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| |||
|short_description=p2@Vars | |||
}} |
Revision as of 14:19, 13 September 2013
Short description: | p2@Vars |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vars_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 47bp_to_ENSMUST00000173584_5end |
EntrezGene: | Vars |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.26e-15 | 32 |
hematopoietic oligopotent progenitor cell | 1.26e-15 | 32 |
hematopoietic stem cell | 1.26e-15 | 32 |
hematopoietic multipotent progenitor cell | 1.26e-15 | 32 |
hematopoietic lineage restricted progenitor cell | 9.00e-13 | 25 |
common myeloid progenitor | 2.03e-09 | 19 |
myeloid cell | 4.17e-08 | 16 |
leukocyte | 1.92e-07 | 17 |
nongranular leukocyte | 1.92e-07 | 17 |
lymphocyte | 2.31e-07 | 13 |
common lymphoid progenitor | 2.31e-07 | 13 |
lymphoid lineage restricted progenitor cell | 2.89e-07 | 12 |
connective tissue cell | 3.36e-07 | 46 |
mesenchymal cell | 3.36e-07 | 46 |
megakaryocyte-erythroid progenitor cell | 5.51e-07 | 9 |
myeloid lineage restricted progenitor cell | 7.61e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.13e-21 | 48 |
immune system | 6.13e-21 | 48 |
hematopoietic system | 6.50e-20 | 45 |
blood island | 6.50e-20 | 45 |
hemopoietic organ | 1.12e-13 | 29 |
immune organ | 1.12e-13 | 29 |
segment of respiratory tract | 1.05e-11 | 27 |
gland of gut | 3.49e-11 | 24 |
thymus | 4.46e-11 | 23 |
neck | 4.46e-11 | 23 |
respiratory system epithelium | 4.46e-11 | 23 |
hemolymphoid system gland | 4.46e-11 | 23 |
pharyngeal epithelium | 4.46e-11 | 23 |
thymic region | 4.46e-11 | 23 |
pharyngeal gland | 4.46e-11 | 23 |
entire pharyngeal arch endoderm | 4.46e-11 | 23 |
thymus primordium | 4.46e-11 | 23 |
early pharyngeal endoderm | 4.46e-11 | 23 |
pharynx | 1.18e-10 | 24 |
upper respiratory tract | 1.18e-10 | 24 |
chordate pharynx | 1.18e-10 | 24 |
pharyngeal arch system | 1.18e-10 | 24 |
pharyngeal region of foregut | 1.18e-10 | 24 |
mixed endoderm/mesoderm-derived structure | 3.13e-09 | 35 |
respiratory system | 3.35e-07 | 42 |
connective tissue | 3.36e-07 | 46 |
respiratory tract | 4.95e-07 | 41 |
bone marrow | 4.99e-07 | 16 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.