FFCP PHASE1:Mm9::chr18:24761965..24762031,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=106957|HGNC=|MCL_coexpression_id=335|UniProt=D3Z7N4|association_with_transcript=0bp_to_ENSMUST00000154205_5end|description=CAGE_peak_2_at_Slc39a6_5end|id=chr18:24761965..24762031,-|ontology_enrichment_celltype=CL:0000540!1.40e-19!33;CL:0000047!1.40e-19!33;CL:0000031!1.40e-19!33;CL:0000404!1.40e-19!33;CL:0000393!7.38e-18!39;CL:0000211!7.38e-18!39;CL:0000221!2.43e-16!44;CL:0000133!2.43e-16!44;CL:0002319!2.46e-16!43;CL:0000055!1.90e-14!50;CL:0000117!3.34e-14!23;CL:0000337!3.34e-14!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.34e-19,33;CL:0000047,1.34e-19,33;CL:0000031,1.34e-19,33;CL:0000404,1.34e-19,33;CL:0000393,7.14e-18,39;CL:0000211,7.14e-18,39;CL:0000221,2.36e-16,44;CL:0000133,2.36e-16,44;CL:0002319,2.39e-16,43;CL:0000117,3.26e-14,23;CL:0000337,3.26e-14,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!4.34e-28!102;UBERON:0000924!4.34e-28!102;UBERON:0006601!4.34e-28!102;UBERON:0000073!1.71e-27!75;UBERON:0001016!1.71e-27!75;UBERON:0001017!1.77e-26!73;UBERON:0005743!1.77e-26!73;UBERON:0002346!2.14e-21!71;UBERON:0003075!2.14e-21!71;UBERON:0007284!2.14e-21!71;UBERON:0000033!5.60e-19!63;UBERON:0001049!3.87e-18!52;UBERON:0005068!3.87e-18!52;UBERON:0006241!3.87e-18!52;UBERON:0007135!3.87e-18!52;UBERON:0003056!8.71e-18!49;UBERON:0000955!9.32e-17!50;UBERON:0006238!9.32e-17!50;UBERON:0002616!3.23e-16!49;UBERON:0002020!3.67e-15!34;UBERON:0000153!4.69e-15!94;UBERON:0003080!5.70e-15!40;UBERON:0002780!9.76e-15!39;UBERON:0001890!9.76e-15!39;UBERON:0006240!9.76e-15!39;UBERON:0007811!5.72e-13!86;UBERON:0002791!4.18e-12!29;UBERON:0003528!4.18e-12!29;UBERON:0001893!4.18e-12!29;UBERON:0000956!1.79e-08!21;UBERON:0001869!1.79e-08!21;UBERON:0000203!1.79e-08!21;UBERON:0000010!5.26e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.43e-29,95;UBERON:0000924,2.43e-29,95;UBERON:0006601,2.43e-29,95;UBERON:0001016,1.62e-27,75;UBERON:0001017,1.69e-26,73;UBERON:0010371,3.35e-23,73;UBERON:0002346,4.75e-23,64;UBERON:0003075,4.75e-23,64;UBERON:0007284,4.75e-23,64;UBERON:0000073,2.29e-19,54;UBERON:0001049,3.74e-18,52;UBERON:0005068,3.74e-18,52;UBERON:0006241,3.74e-18,52;UBERON:0007135,3.74e-18,52;UBERON:0003056,8.42e-18,49;UBERON:0000955,2.02e-15,47;UBERON:0006238,2.02e-15,47;UBERON:0002020,3.57e-15,34;UBERON:0003080,5.54e-15,40;UBERON:0002616,6.85e-15,46;UBERON:0002780,9.50e-15,39;UBERON:0001890,9.50e-15,39;UBERON:0006240,9.50e-15,39;UBERON:0010314,7.05e-14,92;UBERON:0003528,4.09e-12,29;UBERON:0002791,4.09e-12,29;UBERON:0001893,4.09e-12,29;UBERON:0000956,1.76e-08,21;UBERON:0001869,1.76e-08,21;UBERON:0000203,1.76e-08,21;UBERON:0000010,5.20e-07,11|phase1_expression=13.1322054625931,0.348975407639361,0,0,0,0.33575854382378,0,2.84071311571468,3.37892933164,5.61754863172784,2.39705155515707,3.35043067780413,3.76641605848653,4.10875891369288,2.33176833270964,1.82227740650843,0.699561878128147,3.47008381894061,3.15363197293199,2.97072756258621,19.1347402839907,8.93618560807968,10.4479915655574,1.11994695955385,1.83527424853736,0,0,0,0.380046838912748,1.00812051903972,0.221730510655305,0,1.23012957516914,0,0,0.166234645358492,0.204169356262369,0.837063261473815,1.5626706890476,2.09409497589519,0.588231488031014,0,0.485510353031154,6.6725313527056,7.29913904780505,7.15832333430558,6.25913075478431,4.79655344036982,6.37089929929968,9.3326351555656,7.55926676776958,7.18762821824858,3.85899993932794,3.62681071005672,7.39406358113421,9.00408026125814,8.88253663810146,10.8291139378263,42.8910897022347,47.609188134483,39.2975470173831,4.40497891689872,7.11435836888911,4.49949858640699,7.9109309005358,5.6838409195688,5.99200221036809,4.2264013585371,28.2035745479059,26.3261579746797,30.286794434599,22.8520787523043,25.1790136684839,34.4199145794021,32.3957692041639,27.5765635983006,18.7196997698961,16.8547286272448,15.6678663921368,51.699424790236,55.3500243794578,47.4031167206652,11.725685958058,18.0084035210138,18.9469827243245,35.9446874277875,42.85387592053,49.58225258953,13.3278100266404,22.9737542724628,4.05810284182349,0.860423876981386,0.679971333707751,0,0,0,3.7919993435573,5.96506129023202,7.53379413348319,6.36011234118612,9.57735254481427,2.56652954828636,7.64415719119937,21.3320010945999,4.11332977921307,4.05375784760158,3.0331466700887,4.11061966988616,5.43769555659061,5.78924342352817,10.5826049327343,8.22056791442781,7.14908041493781,8.89263579260473,8.11362079236363,3.64433114856059,4.6967043869531,1.87979163995885,1.76922110389975,7.60304194752823,3.3126227769059,2.90925151881133,0,11.1256702864388,13.4045892360611,1.02182822083437,8.74650408893218,5.99902730993408,8.25956475974921,11.9832511523858,9.60751265919116,35.8114903521664,16.6871347384585,20.4572365864264,10.5971902725376,13.9527486238272,11.915205570487,4.10543003013307,6.57079171927554,10.7325346502102,12.1012011955314,12.4147136394075,17.4660265911189,12.2070902446929,16.1246502988647,13.1957131893395,14.3363638576385,13.7112786491678,17.4610074275602,20.6125627382923,21.1141348996739,1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| ||
|EntrezGene=106957 | |||
|HGNC= | |||
|MCL_coexpression_id=335 | |||
|UniProt=D3Z7N4 | |||
|association_with_transcript=0bp_to_ENSMUST00000154205_5end | |||
|description=CAGE_peak_2_at_Slc39a6_5end | |||
|id=chr18:24761965..24762031,- | |||
|ontology_enrichment_celltype=CL:0000540!1.40e-19!33;CL:0000047!1.40e-19!33;CL:0000031!1.40e-19!33;CL:0000404!1.40e-19!33;CL:0000393!7.38e-18!39;CL:0000211!7.38e-18!39;CL:0000221!2.43e-16!44;CL:0000133!2.43e-16!44;CL:0002319!2.46e-16!43;CL:0000055!1.90e-14!50;CL:0000117!3.34e-14!23;CL:0000337!3.34e-14!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.34e-19,33;CL:0000047,1.34e-19,33;CL:0000031,1.34e-19,33;CL:0000404,1.34e-19,33;CL:0000393,7.14e-18,39;CL:0000211,7.14e-18,39;CL:0000221,2.36e-16,44;CL:0000133,2.36e-16,44;CL:0002319,2.39e-16,43;CL:0000117,3.26e-14,23;CL:0000337,3.26e-14,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.34e-28!102;UBERON:0000924!4.34e-28!102;UBERON:0006601!4.34e-28!102;UBERON:0000073!1.71e-27!75;UBERON:0001016!1.71e-27!75;UBERON:0001017!1.77e-26!73;UBERON:0005743!1.77e-26!73;UBERON:0002346!2.14e-21!71;UBERON:0003075!2.14e-21!71;UBERON:0007284!2.14e-21!71;UBERON:0000033!5.60e-19!63;UBERON:0001049!3.87e-18!52;UBERON:0005068!3.87e-18!52;UBERON:0006241!3.87e-18!52;UBERON:0007135!3.87e-18!52;UBERON:0003056!8.71e-18!49;UBERON:0000955!9.32e-17!50;UBERON:0006238!9.32e-17!50;UBERON:0002616!3.23e-16!49;UBERON:0002020!3.67e-15!34;UBERON:0000153!4.69e-15!94;UBERON:0003080!5.70e-15!40;UBERON:0002780!9.76e-15!39;UBERON:0001890!9.76e-15!39;UBERON:0006240!9.76e-15!39;UBERON:0007811!5.72e-13!86;UBERON:0002791!4.18e-12!29;UBERON:0003528!4.18e-12!29;UBERON:0001893!4.18e-12!29;UBERON:0000956!1.79e-08!21;UBERON:0001869!1.79e-08!21;UBERON:0000203!1.79e-08!21;UBERON:0000010!5.26e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.43e-29,95;UBERON:0000924,2.43e-29,95;UBERON:0006601,2.43e-29,95;UBERON:0001016,1.62e-27,75;UBERON:0001017,1.69e-26,73;UBERON:0010371,3.35e-23,73;UBERON:0002346,4.75e-23,64;UBERON:0003075,4.75e-23,64;UBERON:0007284,4.75e-23,64;UBERON:0000073,2.29e-19,54;UBERON:0001049,3.74e-18,52;UBERON:0005068,3.74e-18,52;UBERON:0006241,3.74e-18,52;UBERON:0007135,3.74e-18,52;UBERON:0003056,8.42e-18,49;UBERON:0000955,2.02e-15,47;UBERON:0006238,2.02e-15,47;UBERON:0002020,3.57e-15,34;UBERON:0003080,5.54e-15,40;UBERON:0002616,6.85e-15,46;UBERON:0002780,9.50e-15,39;UBERON:0001890,9.50e-15,39;UBERON:0006240,9.50e-15,39;UBERON:0010314,7.05e-14,92;UBERON:0003528,4.09e-12,29;UBERON:0002791,4.09e-12,29;UBERON:0001893,4.09e-12,29;UBERON:0000956,1.76e-08,21;UBERON:0001869,1.76e-08,21;UBERON:0000203,1.76e-08,21;UBERON:0000010,5.20e-07,11 | |||
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| |||
|short_description=p2@Slc39a6 | |||
}} |
Revision as of 15:50, 13 September 2013
Short description: | p2@Slc39a6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc39a6_5end |
Coexpression cluster: | MCL_coexpression_mm9:335 |
Association with transcript: | 0bp_to_ENSMUST00000154205_5end |
EntrezGene: | Slc39a6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.34e-19 | 33 |
neuronal stem cell | 1.34e-19 | 33 |
neuroblast | 1.34e-19 | 33 |
electrically signaling cell | 1.34e-19 | 33 |
electrically responsive cell | 7.14e-18 | 39 |
electrically active cell | 7.14e-18 | 39 |
ectodermal cell | 2.36e-16 | 44 |
neurectodermal cell | 2.36e-16 | 44 |
neural cell | 2.39e-16 | 43 |
CNS neuron (sensu Vertebrata) | 3.26e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.26e-14 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.43e-29 | 95 |
ectoderm | 2.43e-29 | 95 |
presumptive ectoderm | 2.43e-29 | 95 |
nervous system | 1.62e-27 | 75 |
central nervous system | 1.69e-26 | 73 |
ecto-epithelium | 3.35e-23 | 73 |
neurectoderm | 4.75e-23 | 64 |
neural plate | 4.75e-23 | 64 |
presumptive neural plate | 4.75e-23 | 64 |
regional part of nervous system | 2.29e-19 | 54 |
neural tube | 3.74e-18 | 52 |
neural rod | 3.74e-18 | 52 |
future spinal cord | 3.74e-18 | 52 |
neural keel | 3.74e-18 | 52 |
pre-chordal neural plate | 8.42e-18 | 49 |
brain | 2.02e-15 | 47 |
future brain | 2.02e-15 | 47 |
gray matter | 3.57e-15 | 34 |
anterior neural tube | 5.54e-15 | 40 |
regional part of brain | 6.85e-15 | 46 |
regional part of forebrain | 9.50e-15 | 39 |
forebrain | 9.50e-15 | 39 |
future forebrain | 9.50e-15 | 39 |
structure with developmental contribution from neural crest | 7.05e-14 | 92 |
brain grey matter | 4.09e-12 | 29 |
regional part of telencephalon | 4.09e-12 | 29 |
telencephalon | 4.09e-12 | 29 |
cerebral cortex | 1.76e-08 | 21 |
cerebral hemisphere | 1.76e-08 | 21 |
pallium | 1.76e-08 | 21 |
peripheral nervous system | 5.20e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.