FFCP PHASE1:Hg19::chr5:82835000..82835031,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C456|description=CAGE_peak_at_chr5:82835000..82835031,+|id=chr5:82835000..82835031,+|ontology_enrichment_celltype=CL:0002057!7.65e-23!42;CL:0000860!4.21e-20!45;CL:0002194!4.05e-12!63;CL:0000576!4.05e-12!63;CL:0000040!4.05e-12!63;CL:0000559!4.05e-12!63;CL:0002009!2.93e-11!65;CL:0000839!2.25e-09!70;CL:0000034!2.64e-09!444;CL:0000557!4.90e-09!71;CL:0000048!9.48e-09!430;CL:0000723!9.70e-09!436;CL:0000766!6.28e-08!76;CL:0002334!4.39e-07!12;CL:0000055!8.62e-07!180|ontology_enrichment_celltype_v019=CL:0000860;1.27e-36;33!CL:0002057;1.27e-36;33!CL:0000473;8.75e-26;39!CL:0000234;8.75e-26;39!CL:0000576;1.52e-20;48!CL:0000766;6.58e-11;69!CL:0002334;8.53e-11;12!CL:1000306;1.00e-07;4!CL:0002547;1.00e-07;4|ontology_enrichment_celltype_v019_2=CL:0000860,7.37e-38,42;CL:0002057,7.37e-38,42;CL:0000473,7.59e-32,48;CL:0000234,7.59e-32,48;CL:0002194,1.76e-23,59;CL:0000576,1.76e-23,59;CL:0000040,1.76e-23,59;CL:0000559,1.76e-23,59;CL:0002009,2.08e-22,61;CL:0000839,5.12e-20,66;CL:0000557,1.39e-19,67;CL:0000766,1.36e-17,72;CL:0000134,6.38e-12,354;CL:0002320,7.56e-12,361;CL:0000048,3.25e-11,427;CL:0000723,9.08e-11,433;CL:0000034,1.10e-10,441;CL:0002334,1.57e-10,12;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0000219,1.06e-09,386;CL:0002087,1.53e-08,115;CL:0002031,7.43e-08,120;CL:1000306,8.08e-08,4;CL:0002547,8.08e-08,4|ontology_enrichment_development_v019=CL:0002057;1.56e-27;42|ontology_enrichment_disease=DOID:2394!9.82e-11!14|ontology_enrichment_disease_v019=DOID:2394;5.91e-15;14!DOID:120;8.20e-08;27!DOID:193;4.45e-07;29|ontology_enrichment_disease_v019_2=DOID:2394,3.87e-15,14;DOID:120,6.04e-08,27;DOID:193,3.36e-07,29|ontology_enrichment_uberon=UBERON:0002204!2.18e-12!167;UBERON:0000468!9.87e-09!659;UBERON:0002371!1.34e-07!80;UBERON:0001474!7.47e-07!86|ontology_enrichment_uberon_v019=UBERON:0002118;7.42e-10;5!UBERON:0004797;1.00e-07;4!UBERON:0000415;1.00e-07;4!UBERON:0007240;1.00e-07;4!UBERON:0005742;1.00e-07;4!UBERON:0005734;1.00e-07;4!UBERON:0004664;1.00e-07;4!UBERON:0004663;1.00e-07;4!UBERON:0000992;8.50e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.26e-17,76;UBERON:0001474,1.17e-15,82;UBERON:0004765,2.07e-14,90;UBERON:0001434,5.77e-13,100;UBERON:0002405,9.67e-13,93;UBERON:0002384,3.09e-12,371;UBERON:0002204,3.65e-12,167;UBERON:0002390,1.21e-11,98;UBERON:0003061,1.21e-11,98;UBERON:0000926,1.26e-11,315;UBERON:0004120,1.26e-11,315;UBERON:0006603,1.26e-11,315;UBERON:0003081,5.95e-10,203;UBERON:0002118,8.12e-10,5;UBERON:0002193,8.92e-10,108;UBERON:0000415,8.08e-08,4;UBERON:0007240,8.08e-08,4;UBERON:0005742,8.08e-08,4;UBERON:0005734,8.08e-08,4;UBERON:0004664,8.08e-08,4;UBERON:0004663,8.08e-08,4;UBERON:0000992,8.91e-07,13|phase1_expression=0.908391896352783,1.71280419112787,0.986680828671798,1.0007329835313,0,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,2.6893005858071,1.20538905604795,0,1.46379839637152,0,0,0,0,0.821246550437305,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,6.41742231904453,3.25516306073778,0,0,0,4.21654892460738,0.755751887377619,0.727752183563449,6.74044207026485,2.46700732813095,3.40677007984614,4.60307827715441,2.56160706529101,1.41889337933151,4.13694816883942,4.51839278508678,2.70852973188684,6.96496656307637,4.36649840092553,0.898893937780338,3.67300670845083,1.28371610830437,1.91801137739712,2.30895910130701,4.3882004676759,2.55734850319616,16.8321358404579,0,2.4912889959823,8.79370328398601,10.9511412868242,1.95469960234605,4.23779651843358,0.736555271975129,1.89877432464531,0.845021145247767,0,0.209658645508376,1.57260083605093,1.05123824989054,2.57160938715328,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,1.24930726552346,0,0,0,0,0,4.87613732627923,0.670700859703636,0,1.0843174571537,0.50133791063589,0.289693037921647,0,0,0.189069634328136,1.33037638477538,1.58102614247627,0,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,3.97577561356255,1.64619665163954,1.45650098894541,3.72887606973458,2.12801029319014,0,0,0.98667019366864,0,0.134710672069688,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0.368502951935304,0.103325781175765,0,0.494533858557114,0,0,0,0,0,0,0,0.300476117813194,0.567160915800105,2.33206526395521,0.213557388818567,0.635795703478686,0.300091096084402,0.103052529238439,0.772921620136887,0,2.19409231913646,0,1.00973509697646,0.0920498986422993,0.161646056818812,1.42003837006646,0.10075209822764,0.169560592310488,0,0,0,0.243947412259191,0.265059536642971,0.348581828608555,0.829288440122964,1.00928340350251,0.72995471815166,0,1.92972281457866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0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}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_at_chr5:82835000..82835031,+ | |||
|id=chr5:82835000..82835031,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.65e-23!42;CL:0000860!4.21e-20!45;CL:0002194!4.05e-12!63;CL:0000576!4.05e-12!63;CL:0000040!4.05e-12!63;CL:0000559!4.05e-12!63;CL:0002009!2.93e-11!65;CL:0000839!2.25e-09!70;CL:0000034!2.64e-09!444;CL:0000557!4.90e-09!71;CL:0000048!9.48e-09!430;CL:0000723!9.70e-09!436;CL:0000766!6.28e-08!76;CL:0002334!4.39e-07!12;CL:0000055!8.62e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.27e-36;33!CL:0002057;1.27e-36;33!CL:0000473;8.75e-26;39!CL:0000234;8.75e-26;39!CL:0000576;1.52e-20;48!CL:0000766;6.58e-11;69!CL:0002334;8.53e-11;12!CL:1000306;1.00e-07;4!CL:0002547;1.00e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.37e-38,42;CL:0002057,7.37e-38,42;CL:0000473,7.59e-32,48;CL:0000234,7.59e-32,48;CL:0002194,1.76e-23,59;CL:0000576,1.76e-23,59;CL:0000040,1.76e-23,59;CL:0000559,1.76e-23,59;CL:0002009,2.08e-22,61;CL:0000839,5.12e-20,66;CL:0000557,1.39e-19,67;CL:0000766,1.36e-17,72;CL:0000134,6.38e-12,354;CL:0002320,7.56e-12,361;CL:0000048,3.25e-11,427;CL:0000723,9.08e-11,433;CL:0000034,1.10e-10,441;CL:0002334,1.57e-10,12;CL:0000763,1.00e-09,108;CL:0000049,1.00e-09,108;CL:0000219,1.06e-09,386;CL:0002087,1.53e-08,115;CL:0002031,7.43e-08,120;CL:1000306,8.08e-08,4;CL:0002547,8.08e-08,4 | |||
|ontology_enrichment_development_v019=CL:0002057;1.56e-27;42 | |||
|ontology_enrichment_disease=DOID:2394!9.82e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.91e-15;14!DOID:120;8.20e-08;27!DOID:193;4.45e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.87e-15,14;DOID:120,6.04e-08,27;DOID:193,3.36e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002204!2.18e-12!167;UBERON:0000468!9.87e-09!659;UBERON:0002371!1.34e-07!80;UBERON:0001474!7.47e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002118;7.42e-10;5!UBERON:0004797;1.00e-07;4!UBERON:0000415;1.00e-07;4!UBERON:0007240;1.00e-07;4!UBERON:0005742;1.00e-07;4!UBERON:0005734;1.00e-07;4!UBERON:0004664;1.00e-07;4!UBERON:0004663;1.00e-07;4!UBERON:0000992;8.50e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.26e-17,76;UBERON:0001474,1.17e-15,82;UBERON:0004765,2.07e-14,90;UBERON:0001434,5.77e-13,100;UBERON:0002405,9.67e-13,93;UBERON:0002384,3.09e-12,371;UBERON:0002204,3.65e-12,167;UBERON:0002390,1.21e-11,98;UBERON:0003061,1.21e-11,98;UBERON:0000926,1.26e-11,315;UBERON:0004120,1.26e-11,315;UBERON:0006603,1.26e-11,315;UBERON:0003081,5.95e-10,203;UBERON:0002118,8.12e-10,5;UBERON:0002193,8.92e-10,108;UBERON:0000415,8.08e-08,4;UBERON:0007240,8.08e-08,4;UBERON:0005742,8.08e-08,4;UBERON:0005734,8.08e-08,4;UBERON:0004664,8.08e-08,4;UBERON:0004663,8.08e-08,4;UBERON:0000992,8.91e-07,13 | |||
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| |||
|short_description=p@chr5:82835000..82835031,+ | |||
}} |
Revision as of 16:43, 13 September 2013
Short description: | p@chr5:82835000..82835031, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:82835000..82835031, + |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.37e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.37e-38 | 42 |
defensive cell | 7.59e-32 | 48 |
phagocyte | 7.59e-32 | 48 |
monopoietic cell | 1.76e-23 | 59 |
monocyte | 1.76e-23 | 59 |
monoblast | 1.76e-23 | 59 |
promonocyte | 1.76e-23 | 59 |
macrophage dendritic cell progenitor | 2.08e-22 | 61 |
myeloid lineage restricted progenitor cell | 5.12e-20 | 66 |
granulocyte monocyte progenitor cell | 1.39e-19 | 67 |
myeloid leukocyte | 1.36e-17 | 72 |
mesenchymal cell | 6.38e-12 | 354 |
connective tissue cell | 7.56e-12 | 361 |
multi fate stem cell | 3.25e-11 | 427 |
somatic stem cell | 9.08e-11 | 433 |
stem cell | 1.10e-10 | 441 |
preadipocyte | 1.57e-10 | 12 |
myeloid cell | 1.00e-09 | 108 |
common myeloid progenitor | 1.00e-09 | 108 |
motile cell | 1.06e-09 | 386 |
nongranular leukocyte | 1.53e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 7.43e-08 | 120 |
fibroblast of tunica adventitia of artery | 8.08e-08 | 4 |
fibroblast of the aortic adventitia | 8.08e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.26e-17 | 76 |
bone element | 1.17e-15 | 82 |
skeletal element | 2.07e-14 | 90 |
skeletal system | 5.77e-13 | 100 |
immune system | 9.67e-13 | 93 |
connective tissue | 3.09e-12 | 371 |
musculoskeletal system | 3.65e-12 | 167 |
hematopoietic system | 1.21e-11 | 98 |
blood island | 1.21e-11 | 98 |
mesoderm | 1.26e-11 | 315 |
mesoderm-derived structure | 1.26e-11 | 315 |
presumptive mesoderm | 1.26e-11 | 315 |
lateral plate mesoderm | 5.95e-10 | 203 |
right ovary | 8.12e-10 | 5 |
hemolymphoid system | 8.92e-10 | 108 |
artery wall | 8.08e-08 | 4 |
tunica adventitia of artery | 8.08e-08 | 4 |
adventitia | 8.08e-08 | 4 |
tunica adventitia of blood vessel | 8.08e-08 | 4 |
aorta tunica adventitia | 8.08e-08 | 4 |
aorta wall | 8.08e-08 | 4 |
female gonad | 8.91e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.87e-15 | 14 |
female reproductive organ cancer | 6.04e-08 | 27 |
reproductive organ cancer | 3.36e-07 | 29 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.