FFCP PHASE1:Hg19::chr6:160113895..160113906,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6648|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11180|TSSclassifier=S|UniProt=|association_with_transcript=-213bp_to_ENST00000540491_5end|coexpression_cluster_id=C0|description=CAGE_peak_28_at_SOD2_5end|id=chr6:160113895..160113906,-|ontology_enrichment_celltype=CL:0002057!4.21e-29!42;CL:0000860!3.82e-27!45;CL:0000766!5.70e-22!76;CL:0002194!6.96e-22!63;CL:0000576!6.96e-22!63;CL:0000040!6.96e-22!63;CL:0000559!6.96e-22!63;CL:0002009!1.05e-21!65;CL:0000557!2.25e-18!71;CL:0000839!5.92e-18!70;CL:0000763!5.20e-12!112;CL:0000049!5.20e-12!112;CL:0002087!8.60e-10!119;CL:0000738!1.23e-09!140;CL:0002031!3.76e-08!124;CL:0000048!6.95e-07!430|ontology_enrichment_celltype_v019=CL:0000860;4.86e-68;33!CL:0002057;4.86e-68;33!CL:0000473;1.57e-47;39!CL:0000234;1.57e-47;39!CL:0000576;2.39e-38;48!CL:0000766;6.14e-25;69!CL:0000763;4.28e-11;100!CL:0000775;6.17e-11;3!CL:0002087;5.03e-09;104!CL:0002593;2.27e-07;2!CL:0002561;4.39e-07;2!CL:0000738;4.62e-07;136!CL:0000094;8.03e-07;8|ontology_enrichment_celltype_v019_2=CL:0000860,5.98e-71,42;CL:0002057,5.98e-71,42;CL:0000473,5.07e-61,48;CL:0000234,5.07e-61,48;CL:0000766,8.85e-49,72;CL:0002194,3.96e-47,59;CL:0000576,3.96e-47,59;CL:0000040,3.96e-47,59;CL:0000559,3.96e-47,59;CL:0002009,2.45e-45,61;CL:0000839,2.51e-41,66;CL:0000557,1.35e-40,67;CL:0000763,1.29e-29,108;CL:0000049,1.29e-29,108;CL:0000738,3.75e-23,136;CL:0002087,6.89e-22,115;CL:0002031,3.27e-19,120;CL:0000037,4.89e-17,168;CL:0002032,5.59e-17,161;CL:0000837,5.59e-17,161;CL:0000988,1.02e-15,177;CL:0000775,3.99e-11,3;CL:0000048,7.10e-11,427;CL:0000723,1.48e-10,433;CL:0000034,3.81e-10,441;CL:0000134,6.32e-08,354;CL:0002320,1.40e-07,361;CL:0002593,2.46e-07,2;CL:0002561,2.90e-07,2;CL:0000094,6.35e-07,8|ontology_enrichment_development_v019=CL:0002057;2.10e-52;42!CL:0000049;1.31e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.72e-16!112;UBERON:0002390!1.69e-15!102;UBERON:0003061!1.69e-15!102;UBERON:0002371!3.33e-15!80;UBERON:0002204!7.43e-14!167;UBERON:0001474!1.12e-13!86;UBERON:0002405!5.52e-13!115;UBERON:0004765!8.35e-13!101;UBERON:0001434!8.35e-13!101;UBERON:0003081!2.13e-10!216;UBERON:0000926!2.86e-09!448;UBERON:0004120!2.86e-09!448;UBERON:0006603!2.86e-09!448|ontology_enrichment_uberon_v019=UBERON:0002456;2.27e-07;2!UBERON:0005933;4.39e-07;2!UBERON:0005942;4.39e-07;2!UBERON:0005932;4.39e-07;2!UBERON:0000178;5.25e-07;15!UBERON:0000179;5.25e-07;15!UBERON:0000463;5.25e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.66e-37,108;UBERON:0002390,1.77e-37,98;UBERON:0003061,1.77e-37,98;UBERON:0002371,7.14e-35,76;UBERON:0001474,9.46e-32,82;UBERON:0002405,2.95e-31,93;UBERON:0001434,2.19e-28,100;UBERON:0004765,3.13e-28,90;UBERON:0002204,5.10e-25,167;UBERON:0003081,9.20e-24,203;UBERON:0000926,5.07e-14,315;UBERON:0004120,5.07e-14,315;UBERON:0006603,5.07e-14,315;UBERON:0002456,2.46e-07,2;UBERON:0005933,2.90e-07,2;UBERON:0005942,2.90e-07,2;UBERON:0005932,2.90e-07,2;UBERON:0002384,4.11e-07,371;UBERON:0000178,6.71e-07,15;UBERON:0000179,6.71e-07,15;UBERON:0000463,6.71e-07,15|phase1_expression=0,0.428201047781966,0,0,0,0,0,0.631719873426831,0.522371256399677,0,0,0,0,0.123766352960047,0,2.01697543935533,1.20538905604795,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0.767658796194425,0.154816123316076,0,0,0,0,0,0,2.21598163412751,2.20598892217156,1.08505435357926,0,0,0.257575567634187,0.581592955118259,0.377875943688809,1.21292030593908,3.95129362739664,5.34518254428373,2.47765096716083,6.32923263108731,4.61089271752381,2.12834006899727,9.99762474136194,5.16387746867061,1.35426486594342,3.9530891303947,1.09162460023138,1.79778787556068,11.0190201253525,2.56743221660875,3.83602275479425,3.62836430205388,2.79249120670285,1.27867425159808,12.1887880224005,10.7803192691317,7.4738669879469,4.01997864410789,6.77927793946262,2.82345498116652,11.502590550034,5.15588690382591,7.27863491114034,0,0.212604299965044,0,0.22465726229299,0.150176892841506,0.16072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0.538842688278752,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0.122834317311768,0.206651562351531,0,1.23633464639278,0,0,0,0,0,0.438977620880838,0,0.901428353439581,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0.643240938192885,0,1.85747171212792,1.44375896333917,0,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,5.89696330006576,1.18157981336281,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,2.021130268655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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-213bp_to_ENST00000540491_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_28_at_SOD2_5end | |||
|id=chr6:160113895..160113906,- | |||
|ontology_enrichment_celltype=CL:0002057!4.21e-29!42;CL:0000860!3.82e-27!45;CL:0000766!5.70e-22!76;CL:0002194!6.96e-22!63;CL:0000576!6.96e-22!63;CL:0000040!6.96e-22!63;CL:0000559!6.96e-22!63;CL:0002009!1.05e-21!65;CL:0000557!2.25e-18!71;CL:0000839!5.92e-18!70;CL:0000763!5.20e-12!112;CL:0000049!5.20e-12!112;CL:0002087!8.60e-10!119;CL:0000738!1.23e-09!140;CL:0002031!3.76e-08!124;CL:0000048!6.95e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.86e-68;33!CL:0002057;4.86e-68;33!CL:0000473;1.57e-47;39!CL:0000234;1.57e-47;39!CL:0000576;2.39e-38;48!CL:0000766;6.14e-25;69!CL:0000763;4.28e-11;100!CL:0000775;6.17e-11;3!CL:0002087;5.03e-09;104!CL:0002593;2.27e-07;2!CL:0002561;4.39e-07;2!CL:0000738;4.62e-07;136!CL:0000094;8.03e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.98e-71,42;CL:0002057,5.98e-71,42;CL:0000473,5.07e-61,48;CL:0000234,5.07e-61,48;CL:0000766,8.85e-49,72;CL:0002194,3.96e-47,59;CL:0000576,3.96e-47,59;CL:0000040,3.96e-47,59;CL:0000559,3.96e-47,59;CL:0002009,2.45e-45,61;CL:0000839,2.51e-41,66;CL:0000557,1.35e-40,67;CL:0000763,1.29e-29,108;CL:0000049,1.29e-29,108;CL:0000738,3.75e-23,136;CL:0002087,6.89e-22,115;CL:0002031,3.27e-19,120;CL:0000037,4.89e-17,168;CL:0002032,5.59e-17,161;CL:0000837,5.59e-17,161;CL:0000988,1.02e-15,177;CL:0000775,3.99e-11,3;CL:0000048,7.10e-11,427;CL:0000723,1.48e-10,433;CL:0000034,3.81e-10,441;CL:0000134,6.32e-08,354;CL:0002320,1.40e-07,361;CL:0002593,2.46e-07,2;CL:0002561,2.90e-07,2;CL:0000094,6.35e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.10e-52;42!CL:0000049;1.31e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.72e-16!112;UBERON:0002390!1.69e-15!102;UBERON:0003061!1.69e-15!102;UBERON:0002371!3.33e-15!80;UBERON:0002204!7.43e-14!167;UBERON:0001474!1.12e-13!86;UBERON:0002405!5.52e-13!115;UBERON:0004765!8.35e-13!101;UBERON:0001434!8.35e-13!101;UBERON:0003081!2.13e-10!216;UBERON:0000926!2.86e-09!448;UBERON:0004120!2.86e-09!448;UBERON:0006603!2.86e-09!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002456;2.27e-07;2!UBERON:0005933;4.39e-07;2!UBERON:0005942;4.39e-07;2!UBERON:0005932;4.39e-07;2!UBERON:0000178;5.25e-07;15!UBERON:0000179;5.25e-07;15!UBERON:0000463;5.25e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.66e-37,108;UBERON:0002390,1.77e-37,98;UBERON:0003061,1.77e-37,98;UBERON:0002371,7.14e-35,76;UBERON:0001474,9.46e-32,82;UBERON:0002405,2.95e-31,93;UBERON:0001434,2.19e-28,100;UBERON:0004765,3.13e-28,90;UBERON:0002204,5.10e-25,167;UBERON:0003081,9.20e-24,203;UBERON:0000926,5.07e-14,315;UBERON:0004120,5.07e-14,315;UBERON:0006603,5.07e-14,315;UBERON:0002456,2.46e-07,2;UBERON:0005933,2.90e-07,2;UBERON:0005942,2.90e-07,2;UBERON:0005932,2.90e-07,2;UBERON:0002384,4.11e-07,371;UBERON:0000178,6.71e-07,15;UBERON:0000179,6.71e-07,15;UBERON:0000463,6.71e-07,15 | |||
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| |||
|short_description=p28@SOD2 | |||
}} |
Revision as of 19:07, 13 September 2013
Short description: | p28@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_28_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -213bp_to_ENST00000540491_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.66e-37 | 108 |
hematopoietic system | 1.77e-37 | 98 |
blood island | 1.77e-37 | 98 |
bone marrow | 7.14e-35 | 76 |
bone element | 9.46e-32 | 82 |
immune system | 2.95e-31 | 93 |
skeletal system | 2.19e-28 | 100 |
skeletal element | 3.13e-28 | 90 |
musculoskeletal system | 5.10e-25 | 167 |
lateral plate mesoderm | 9.20e-24 | 203 |
mesoderm | 5.07e-14 | 315 |
mesoderm-derived structure | 5.07e-14 | 315 |
presumptive mesoderm | 5.07e-14 | 315 |
internal thoracic artery | 2.46e-07 | 2 |
hair root sheath | 2.90e-07 | 2 |
hair outer root sheath | 2.90e-07 | 2 |
bulb of hair follicle | 2.90e-07 | 2 |
connective tissue | 4.11e-07 | 371 |
blood | 6.71e-07 | 15 |
haemolymphatic fluid | 6.71e-07 | 15 |
organism substance | 6.71e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.