FFCP PHASE1:Mm9::chr4:134470925..134470934,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71817|HGNC=|UniProt=Q9CXL1|association_with_transcript=0bp_to_ENSMUST00000105863_5end|description=CAGE_peak_3_at_Tmem50a_5end|id=chr4:134470925..134470934,-|ontology_enrichment_celltype=CL:0000055!4.36e-12!50;CL:0000221!1.35e-10!44;CL:0000133!1.35e-10!44;CL:0002319!2.20e-10!43;CL:0000393!4.28e-08!39;CL:0000211!4.28e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.35e-10,44;CL:0000133,1.35e-10,44;CL:0002319,2.20e-10,43;CL:0000393,4.28e-08,39;CL:0000211,4.28e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.62e-15!75;UBERON:0001016!9.62e-15!75;UBERON:0001017!7.16e-14!73;UBERON:0005743!7.16e-14!73;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0002346!2.91e-11!71;UBERON:0003075!2.91e-11!71;UBERON:0007284!2.91e-11!71;UBERON:0001049!2.11e-10!52;UBERON:0005068!2.11e-10!52;UBERON:0006241!2.11e-10!52;UBERON:0007135!2.11e-10!52;UBERON:0002616!4.14e-10!49;UBERON:0002020!4.34e-10!34;UBERON:0000955!1.83e-09!50;UBERON:0006238!1.83e-09!50;UBERON:0003080!2.48e-09!40;UBERON:0002780!4.24e-09!39;UBERON:0001890!4.24e-09!39;UBERON:0006240!4.24e-09!39;UBERON:0002791!1.20e-08!29;UBERON:0003528!1.20e-08!29;UBERON:0001893!1.20e-08!29;UBERON:0000033!3.38e-08!63;UBERON:0003056!8.98e-08!49;UBERON:0002619!8.34e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.61e-15,75;UBERON:0001017,7.16e-14,73;UBERON:0000073,1.36e-11,54;UBERON:0004121,2.85e-11,95;UBERON:0000924,2.85e-11,95;UBERON:0006601,2.85e-11,95;UBERON:0010314,3.24e-11,92;UBERON:0001049,2.11e-10,52;UBERON:0005068,2.11e-10,52;UBERON:0006241,2.11e-10,52;UBERON:0007135,2.11e-10,52;UBERON:0002020,4.34e-10,34;UBERON:0003080,2.48e-09,40;UBERON:0002616,3.25e-09,46;UBERON:0002346,4.09e-09,64;UBERON:0003075,4.09e-09,64;UBERON:0007284,4.09e-09,64;UBERON:0002780,4.24e-09,39;UBERON:0001890,4.24e-09,39;UBERON:0006240,4.24e-09,39;UBERON:0003528,1.20e-08,29;UBERON:0002791,1.20e-08,29;UBERON:0001893,1.20e-08,29;UBERON:0000955,1.37e-08,47;UBERON:0006238,1.37e-08,47;UBERON:0010371,7.38e-08,73;UBERON:0003056,8.98e-08,49;UBERON:0002619,8.34e-07,17|phase1_expression=6.72625157840135,1.74487703819681,3.18499467572675,2.11724947914781,0.500895729946347,1.51091344720701,3.97141489012394,6.45616617207881,0.703943610758334,0.468129052643987,1.54096171402954,1.35612670292072,5.30722262786738,8.21751782738576,3.33109761815663,3.44207954562704,3.49780939064073,3.94327706697797,4.52477630898938,1.27316895539409,3.57181818634493,6.25532992565577,4.70159620450084,4.95976510659561,4.5881856213434,3.44539178469012,2.58457197695445,2.58565479223067,3.23039813075836,1.76421090831952,5.54326276638262,1.90509202037889,1.23012957516914,0,2.88851619751275,2.65975432573588,3.26670970019791,14.2300754450549,16.4080422349998,14.1351410872926,11.1763982725893,9.56263678941824,16.0218416500281,5.66535680890098,4.76471576731718,5.68994931701213,7.04152209913235,6.75877984779384,8.78744730937887,9.52706505463989,8.67915814077248,11.5002051491977,1.34226084846189,5.07753499407941,4.36921938885203,13.3774906738692,8.88253663810146,10.3134418455488,4.45096213891115,6.34789175126439,6.97214543856797,11.8595586224196,4.4464739805557,16.6481447697059,15.8218618010716,10.6572017241915,5.99200221036809,8.83702102239575,3.11068836925433,4.18518408828241,4.6271491497304,6.28432165688368,9.27647871996777,5.14461356702807,6.13411014516713,8.27296907949019,5.50579404996943,6.76742891851495,7.98753972932466,5.53922408466814,7.95942499340964,9.37644067002168,5.30447698102624,10.1297269805702,10.5430790965999,7.07108605136802,7.11858403995515,4.65998614563251,6.81535739998656,8.76630097238712,3.18850937571846,4.30211938490693,0,3.77792234146472,1.94932925234301,0.448026887097336,3.93244376368905,6.64678258054425,9.61208217030615,7.42013106471715,5.7745802108439,11.5493829672886,5.09610479413291,0,6.92771331235885,6.58735650235256,7.07734223020697,3.19714863213368,4.40194402200192,4.89859058913922,5.72501578328248,7.00270600117925,9.4552353874984,10.2491395575783,6.34979018532806,6.6603293404728,5.19109432242185,4.33798070759735,10.6153266233985,4.04417124868523,3.5334642953663,4.363877278217,1.86391761218122,2.92780797011547,3.97948742945565,4.85368404896324,4.79260498023681,7.19883277192089,5.84523044536098,5.99162557619291,6.40500843946077,5.6544458450789,9.90798625095976,5.62574006126727,5.40248915854856,4.05603157669394,4.88828946481518,3.98102305952298,5.81262344397452,3.57751155007006,4.94457683258274,6.89706313300419,5.40186389416048,4.67184935290717,3.81004395247436,3.71529788826064,3.5606655332697,3.10444044886819,3.44908788692548,4.72765200419548,5.63043597324636,5.69908904311695,5.83899223373756,4.52727816478817,6.37924622864625,2.7864797354589,8.42655824775882,4.63226232806487,7.672414483681,4.97101854085205,5.39409937956521,4.68161359798639,3.78791576936336,6.68998387941173,4.01094493507183,4.88321283975857,5.09719462659276,3.97002164048376,4.11399624783701,4.59668899421467,2.99954595319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| ||
|EntrezGene=71817 | |||
|HGNC= | |||
|UniProt=Q9CXL1 | |||
|association_with_transcript=0bp_to_ENSMUST00000105863_5end | |||
|description=CAGE_peak_3_at_Tmem50a_5end | |||
|id=chr4:134470925..134470934,- | |||
|ontology_enrichment_celltype=CL:0000055!4.36e-12!50;CL:0000221!1.35e-10!44;CL:0000133!1.35e-10!44;CL:0002319!2.20e-10!43;CL:0000393!4.28e-08!39;CL:0000211!4.28e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.35e-10,44;CL:0000133,1.35e-10,44;CL:0002319,2.20e-10,43;CL:0000393,4.28e-08,39;CL:0000211,4.28e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.62e-15!75;UBERON:0001016!9.62e-15!75;UBERON:0001017!7.16e-14!73;UBERON:0005743!7.16e-14!73;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0002346!2.91e-11!71;UBERON:0003075!2.91e-11!71;UBERON:0007284!2.91e-11!71;UBERON:0001049!2.11e-10!52;UBERON:0005068!2.11e-10!52;UBERON:0006241!2.11e-10!52;UBERON:0007135!2.11e-10!52;UBERON:0002616!4.14e-10!49;UBERON:0002020!4.34e-10!34;UBERON:0000955!1.83e-09!50;UBERON:0006238!1.83e-09!50;UBERON:0003080!2.48e-09!40;UBERON:0002780!4.24e-09!39;UBERON:0001890!4.24e-09!39;UBERON:0006240!4.24e-09!39;UBERON:0002791!1.20e-08!29;UBERON:0003528!1.20e-08!29;UBERON:0001893!1.20e-08!29;UBERON:0000033!3.38e-08!63;UBERON:0003056!8.98e-08!49;UBERON:0002619!8.34e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.61e-15,75;UBERON:0001017,7.16e-14,73;UBERON:0000073,1.36e-11,54;UBERON:0004121,2.85e-11,95;UBERON:0000924,2.85e-11,95;UBERON:0006601,2.85e-11,95;UBERON:0010314,3.24e-11,92;UBERON:0001049,2.11e-10,52;UBERON:0005068,2.11e-10,52;UBERON:0006241,2.11e-10,52;UBERON:0007135,2.11e-10,52;UBERON:0002020,4.34e-10,34;UBERON:0003080,2.48e-09,40;UBERON:0002616,3.25e-09,46;UBERON:0002346,4.09e-09,64;UBERON:0003075,4.09e-09,64;UBERON:0007284,4.09e-09,64;UBERON:0002780,4.24e-09,39;UBERON:0001890,4.24e-09,39;UBERON:0006240,4.24e-09,39;UBERON:0003528,1.20e-08,29;UBERON:0002791,1.20e-08,29;UBERON:0001893,1.20e-08,29;UBERON:0000955,1.37e-08,47;UBERON:0006238,1.37e-08,47;UBERON:0010371,7.38e-08,73;UBERON:0003056,8.98e-08,49;UBERON:0002619,8.34e-07,17 | |||
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| |||
|short_description=p3@Tmem50a | |||
}} |
Revision as of 04:05, 14 September 2013
Short description: | p3@Tmem50a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tmem50a_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000105863_5end |
EntrezGene: | Tmem50a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.35e-10 | 44 |
neurectodermal cell | 1.35e-10 | 44 |
neural cell | 2.20e-10 | 43 |
electrically responsive cell | 4.28e-08 | 39 |
electrically active cell | 4.28e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.61e-15 | 75 |
central nervous system | 7.16e-14 | 73 |
regional part of nervous system | 1.36e-11 | 54 |
ectoderm-derived structure | 2.85e-11 | 95 |
ectoderm | 2.85e-11 | 95 |
presumptive ectoderm | 2.85e-11 | 95 |
structure with developmental contribution from neural crest | 3.24e-11 | 92 |
neural tube | 2.11e-10 | 52 |
neural rod | 2.11e-10 | 52 |
future spinal cord | 2.11e-10 | 52 |
neural keel | 2.11e-10 | 52 |
gray matter | 4.34e-10 | 34 |
anterior neural tube | 2.48e-09 | 40 |
regional part of brain | 3.25e-09 | 46 |
neurectoderm | 4.09e-09 | 64 |
neural plate | 4.09e-09 | 64 |
presumptive neural plate | 4.09e-09 | 64 |
regional part of forebrain | 4.24e-09 | 39 |
forebrain | 4.24e-09 | 39 |
future forebrain | 4.24e-09 | 39 |
brain grey matter | 1.20e-08 | 29 |
regional part of telencephalon | 1.20e-08 | 29 |
telencephalon | 1.20e-08 | 29 |
brain | 1.37e-08 | 47 |
future brain | 1.37e-08 | 47 |
ecto-epithelium | 7.38e-08 | 73 |
pre-chordal neural plate | 8.98e-08 | 49 |
regional part of cerebral cortex | 8.34e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.