FFCP PHASE1:Mm9::chr6:113573982..113574031,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22346|HGNC=|MCL_coexpression_id=1410|UniProt=P40338,Q3TTE7|association_with_transcript=0bp_to_NM_009507,uc009dha.1_5end|description=CAGE_peak_1_at_Vhl_5end|id=chr6:113573982..113574031,+|ontology_enrichment_celltype=CL:0000117!6.70e-13!23;CL:0000337!6.70e-13!23;CL:0000221!5.08e-10!44;CL:0000133!5.08e-10!44;CL:0000540!7.99e-10!33;CL:0000047!7.99e-10!33;CL:0000031!7.99e-10!33;CL:0000404!7.99e-10!33;CL:0002319!1.41e-09!43;CL:0000393!1.61e-07!39;CL:0000211!1.61e-07!39;CL:0000055!2.32e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.70e-13,23;CL:0000337,6.70e-13,23;CL:0000221,5.08e-10,44;CL:0000133,5.08e-10,44;CL:0000540,7.99e-10,33;CL:0000047,7.99e-10,33;CL:0000031,7.99e-10,33;CL:0000404,7.99e-10,33;CL:0002319,1.41e-09,43;CL:0000393,1.61e-07,39;CL:0000211,1.61e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.88e-14!73;UBERON:0005743!2.88e-14!73;UBERON:0002346!5.20e-13!71;UBERON:0003075!5.20e-13!71;UBERON:0007284!5.20e-13!71;UBERON:0000073!5.33e-13!75;UBERON:0001016!5.33e-13!75;UBERON:0001049!8.69e-13!52;UBERON:0005068!8.69e-13!52;UBERON:0006241!8.69e-13!52;UBERON:0007135!8.69e-13!52;UBERON:0000033!1.16e-11!63;UBERON:0000955!4.19e-11!50;UBERON:0006238!4.19e-11!50;UBERON:0002616!5.57e-11!49;UBERON:0007811!8.59e-11!86;UBERON:0000153!9.83e-11!94;UBERON:0004121!3.03e-10!102;UBERON:0000924!3.03e-10!102;UBERON:0006601!3.03e-10!102;UBERON:0003056!3.29e-10!49;UBERON:0002020!6.41e-10!34;UBERON:0002780!1.08e-09!39;UBERON:0001890!1.08e-09!39;UBERON:0006240!1.08e-09!39;UBERON:0003080!3.69e-09!40;UBERON:0002791!2.92e-07!29;UBERON:0003528!2.92e-07!29;UBERON:0001893!2.92e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.88e-14,73;UBERON:0000073,9.74e-14,54;UBERON:0002346,4.35e-13,64;UBERON:0003075,4.35e-13,64;UBERON:0007284,4.35e-13,64;UBERON:0001016,5.33e-13,75;UBERON:0001049,8.69e-13,52;UBERON:0005068,8.69e-13,52;UBERON:0006241,8.69e-13,52;UBERON:0007135,8.69e-13,52;UBERON:0003056,3.29e-10,49;UBERON:0000955,3.39e-10,47;UBERON:0006238,3.39e-10,47;UBERON:0002616,4.48e-10,46;UBERON:0004121,5.33e-10,95;UBERON:0000924,5.33e-10,95;UBERON:0006601,5.33e-10,95;UBERON:0002020,6.41e-10,34;UBERON:0010371,7.80e-10,73;UBERON:0002780,1.08e-09,39;UBERON:0001890,1.08e-09,39;UBERON:0006240,1.08e-09,39;UBERON:0003080,3.69e-09,40;UBERON:0010314,6.10e-09,92;UBERON:0003528,2.92e-07,29;UBERON:0002791,2.92e-07,29;UBERON:0001893,2.92e-07,29|phase1_expression=16.335182404689,12.9120900826564,9.09998478779072,8.16653370528441,14.0250804384977,6.21153306073992,10.2789561862031,12.0084690800666,9.57363310631334,9.59664557920173,9.93064215707929,9.89174771542172,10.6144452557348,10.9275503023747,3.66420737997229,3.44207954562704,2.79824751251259,13.4071420277251,11.1062691220648,14.429248161133,22.0262121491271,11.0212955832983,10.1867917764185,3.99981056983517,6.65286915094793,14.3557991028755,9.90752591165872,6.89507944594845,8.17100703662408,7.81293402255785,4.43461021310609,6.98533740805594,7.38077745101484,0,11.554064790051,6.98185510505668,5.10423390655923,25.5304294749514,28.1280724028568,17.7998072951091,29.9998058895817,27.3218193983378,34.4712350652119,5.79125362687656,6.48812359804893,7.34187008646726,10.9534788208725,13.0815093828268,12.3024262331304,12.2490836416799,8.53917171914711,4.31257693094915,12.9192606664457,10.1550699881588,8.06625117941913,6.43148590089868,7.16333599846892,9.28209766099396,24.0756588422921,22.7466121086974,18.3811107016792,9.4876468979357,2.66788438833342,8.99899717281399,7.9109309005358,7.8152812644071,17.6764065205859,18.4424786554346,18.5604406032175,21.3309382564071,21.8737959805437,23.7090317055157,20.9825113904033,21.435889862617,23.0029130443767,22.9804696652505,13.2139057199266,11.1087984134113,11.981309593987,22.6844414895933,19.3038928001084,15.6274011167028,10.8881369610539,11.2552522006336,12.5294563176984,25.6326869362091,16.9422300150933,19.7583412574819,6.05809546665472,3.55186332501892,7.24661221754194,6.88339101585109,8.15965600449301,2.69851595818909,1.94932925234301,1.34408066129201,7.8648875273781,8.18065548374677,8.83272415649754,6.71345191569646,14.9294024963281,6.41632387071589,5.09610479413291,7.11066703153331,5.62876706629157,5.57391704045217,5.56076889516262,7.19358442230078,6.73238497482646,5.64080128446334,9.36820764537134,12.7875500891099,9.4552353874984,10.5505848386836,9.05433044944927,8.92232798440696,10.3821886448437,3.7595832799177,5.30766331169925,4.20593809863264,5.30019644304944,4.363877278217,3.72783522436244,10.8328894894272,11.1006754611131,4.59822699375465,11.981512450592,10.7982491578813,12.1987417990142,6.29120685500255,9.15001205637253,13.8219787324151,9.38651329038293,10.7400492078739,10.5971902725376,8.76102820565891,12.9335992089902,7.71323217782577,7.32895999457657,6.73413938836717,12.1012011955314,12.1848115349741,12.2442248267637,11.6042709733501,13.0630078370549,11.0177799444971,11.056803498048,6.20888089773638,9.26942369611222,8.88798576788751,10.7330185740009,14.46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| ||
|EntrezGene=22346 | |||
|HGNC= | |||
|MCL_coexpression_id=1410 | |||
|UniProt=P40338,Q3TTE7 | |||
|association_with_transcript=0bp_to_NM_009507,uc009dha.1_5end | |||
|description=CAGE_peak_1_at_Vhl_5end | |||
|id=chr6:113573982..113574031,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.70e-13!23;CL:0000337!6.70e-13!23;CL:0000221!5.08e-10!44;CL:0000133!5.08e-10!44;CL:0000540!7.99e-10!33;CL:0000047!7.99e-10!33;CL:0000031!7.99e-10!33;CL:0000404!7.99e-10!33;CL:0002319!1.41e-09!43;CL:0000393!1.61e-07!39;CL:0000211!1.61e-07!39;CL:0000055!2.32e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.70e-13,23;CL:0000337,6.70e-13,23;CL:0000221,5.08e-10,44;CL:0000133,5.08e-10,44;CL:0000540,7.99e-10,33;CL:0000047,7.99e-10,33;CL:0000031,7.99e-10,33;CL:0000404,7.99e-10,33;CL:0002319,1.41e-09,43;CL:0000393,1.61e-07,39;CL:0000211,1.61e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.88e-14!73;UBERON:0005743!2.88e-14!73;UBERON:0002346!5.20e-13!71;UBERON:0003075!5.20e-13!71;UBERON:0007284!5.20e-13!71;UBERON:0000073!5.33e-13!75;UBERON:0001016!5.33e-13!75;UBERON:0001049!8.69e-13!52;UBERON:0005068!8.69e-13!52;UBERON:0006241!8.69e-13!52;UBERON:0007135!8.69e-13!52;UBERON:0000033!1.16e-11!63;UBERON:0000955!4.19e-11!50;UBERON:0006238!4.19e-11!50;UBERON:0002616!5.57e-11!49;UBERON:0007811!8.59e-11!86;UBERON:0000153!9.83e-11!94;UBERON:0004121!3.03e-10!102;UBERON:0000924!3.03e-10!102;UBERON:0006601!3.03e-10!102;UBERON:0003056!3.29e-10!49;UBERON:0002020!6.41e-10!34;UBERON:0002780!1.08e-09!39;UBERON:0001890!1.08e-09!39;UBERON:0006240!1.08e-09!39;UBERON:0003080!3.69e-09!40;UBERON:0002791!2.92e-07!29;UBERON:0003528!2.92e-07!29;UBERON:0001893!2.92e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.88e-14,73;UBERON:0000073,9.74e-14,54;UBERON:0002346,4.35e-13,64;UBERON:0003075,4.35e-13,64;UBERON:0007284,4.35e-13,64;UBERON:0001016,5.33e-13,75;UBERON:0001049,8.69e-13,52;UBERON:0005068,8.69e-13,52;UBERON:0006241,8.69e-13,52;UBERON:0007135,8.69e-13,52;UBERON:0003056,3.29e-10,49;UBERON:0000955,3.39e-10,47;UBERON:0006238,3.39e-10,47;UBERON:0002616,4.48e-10,46;UBERON:0004121,5.33e-10,95;UBERON:0000924,5.33e-10,95;UBERON:0006601,5.33e-10,95;UBERON:0002020,6.41e-10,34;UBERON:0010371,7.80e-10,73;UBERON:0002780,1.08e-09,39;UBERON:0001890,1.08e-09,39;UBERON:0006240,1.08e-09,39;UBERON:0003080,3.69e-09,40;UBERON:0010314,6.10e-09,92;UBERON:0003528,2.92e-07,29;UBERON:0002791,2.92e-07,29;UBERON:0001893,2.92e-07,29 | |||
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| |||
|short_description=p1@Vhl | |||
}} |
Revision as of 08:33, 14 September 2013
Short description: | p1@Vhl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vhl_5end |
Coexpression cluster: | MCL_coexpression_mm9:1410 |
Association with transcript: | 0bp_to_NM_009507, uc009dha.1_5end |
EntrezGene: | Vhl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.70e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.70e-13 | 23 |
ectodermal cell | 5.08e-10 | 44 |
neurectodermal cell | 5.08e-10 | 44 |
neuron | 7.99e-10 | 33 |
neuronal stem cell | 7.99e-10 | 33 |
neuroblast | 7.99e-10 | 33 |
electrically signaling cell | 7.99e-10 | 33 |
neural cell | 1.41e-09 | 43 |
electrically responsive cell | 1.61e-07 | 39 |
electrically active cell | 1.61e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.88e-14 | 73 |
regional part of nervous system | 9.74e-14 | 54 |
neurectoderm | 4.35e-13 | 64 |
neural plate | 4.35e-13 | 64 |
presumptive neural plate | 4.35e-13 | 64 |
nervous system | 5.33e-13 | 75 |
neural tube | 8.69e-13 | 52 |
neural rod | 8.69e-13 | 52 |
future spinal cord | 8.69e-13 | 52 |
neural keel | 8.69e-13 | 52 |
pre-chordal neural plate | 3.29e-10 | 49 |
brain | 3.39e-10 | 47 |
future brain | 3.39e-10 | 47 |
regional part of brain | 4.48e-10 | 46 |
ectoderm-derived structure | 5.33e-10 | 95 |
ectoderm | 5.33e-10 | 95 |
presumptive ectoderm | 5.33e-10 | 95 |
gray matter | 6.41e-10 | 34 |
ecto-epithelium | 7.80e-10 | 73 |
regional part of forebrain | 1.08e-09 | 39 |
forebrain | 1.08e-09 | 39 |
future forebrain | 1.08e-09 | 39 |
anterior neural tube | 3.69e-09 | 40 |
structure with developmental contribution from neural crest | 6.10e-09 | 92 |
brain grey matter | 2.92e-07 | 29 |
regional part of telencephalon | 2.92e-07 | 29 |
telencephalon | 2.92e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.