FFCP PHASE1:Mm9::chr6:29559794..29559805,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=320938|HGNC=|MCL_coexpression_id=7|UniProt=E9Q0H8|association_with_transcript=5bp_to_ENSMUST00000170350_5end|description=CAGE_peak_3_at_Tnpo3_5end|id=chr6:29559794..29559805,-|ontology_enrichment_celltype=CL:0000838!1.94e-07!12;CL:0000542!2.22e-07!13;CL:0000051!2.22e-07!13;CL:0000791!5.00e-07!9;CL:0000789!5.00e-07!9;CL:0002420!5.00e-07!9;CL:0002419!5.00e-07!9;CL:0000790!5.00e-07!9;CL:0000084!6.56e-07!11;CL:0000827!6.56e-07!11;CL:0000988!7.73e-07!32;CL:0002032!7.73e-07!32;CL:0000037!7.73e-07!32;CL:0000566!7.73e-07!32;CL:0000837!7.73e-07!32|ontology_enrichment_celltype_v019_2=CL:0000838,6.55e-15,12;CL:0000791,1.52e-14,9;CL:0000789,1.52e-14,9;CL:0002420,1.52e-14,9;CL:0002419,1.52e-14,9;CL:0000790,1.52e-14,9;CL:0000084,1.16e-13,11;CL:0000827,1.16e-13,11;CL:0000542,1.56e-13,13;CL:0000051,1.56e-13,13;CL:0000624,6.43e-13,8;CL:0000988,3.18e-12,32;CL:0002032,3.18e-12,32;CL:0000037,3.18e-12,32;CL:0000837,3.18e-12,32;CL:0000738,1.42e-11,17;CL:0002087,1.42e-11,17;CL:0002320,2.49e-11,46;CL:0000134,2.49e-11,46;CL:0000034,1.20e-10,97;CL:0000893,1.32e-10,6;CL:0002489,1.32e-10,6;CL:0000898,1.32e-10,6;CL:0000809,1.32e-10,6;CL:0000810,1.32e-10,6;CL:0000895,1.32e-10,6;CL:0000808,1.32e-10,6;CL:0000894,1.32e-10,6;CL:0000806,1.32e-10,6;CL:0000807,1.32e-10,6;CL:0000805,1.32e-10,6;CL:0002425,1.32e-10,6;CL:0002436,1.32e-10,6;CL:0002427,1.32e-10,6;CL:0002428,1.32e-10,6;CL:0002429,1.32e-10,6;CL:0002433,1.32e-10,6;CL:0002431,1.32e-10,6;CL:0002432,1.32e-10,6;CL:0000219,9.86e-10,54;CL:0002031,3.03e-08,25;CL:0000723,1.89e-07,91;CL:0000048,1.89e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005057!5.09e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.49e-11,46;UBERON:0006562,3.08e-08,24;UBERON:0001557,3.08e-08,24;UBERON:0001042,3.08e-08,24;UBERON:0008814,3.08e-08,24;UBERON:0009145,3.08e-08,24;UBERON:0000072,4.68e-08,27;UBERON:0000077,1.83e-07,35;UBERON:0002370,2.63e-07,23;UBERON:0000974,2.63e-07,23;UBERON:0004807,2.63e-07,23;UBERON:0005058,2.63e-07,23;UBERON:0003351,2.63e-07,23;UBERON:0009113,2.63e-07,23;UBERON:0003295,2.63e-07,23;UBERON:0009722,2.63e-07,23;UBERON:0005562,2.63e-07,23;UBERON:0007690,2.63e-07,23;UBERON:0003408,6.98e-07,24|phase1_expression=0.320297694209588,0.697950815278722,0,1.20985684522732,0,1.17515490338323,0.467225281191051,1.03298658753261,18.161745157565,15.2141942109296,4.28044920563762,3.5099749957948,2.05440875917447,1.39872643870396,0.333109761815663,0.809901069559304,0.699561878128147,0.788655413395594,0.548457734422955,0.84877930359606,0.510259740906419,0.496454756004426,1.04479915655574,0.47997726838022,0.22940928106717,0.57423196411502,0.430761996159075,0.430942465371778,0,0,0,0,1.84519436275371,0,0,0.166234645358492,0.816677425049476,1.25559489221072,0.7813353445238,1.0470474879476,0.588231488031014,0,1.45653105909346,0.251793635951155,0.304130793658544,0.183546752161682,0,0,0,0,0.279972843250725,0,1.51004345451963,5.80289713609076,7.05796978199174,0.257259436035947,1.14613375975503,0.515672092277442,0,0.528990979272033,0.633831403506179,0,0,0.449949858640699,0,0,0,0,0.622137673850866,0.135005938331691,0,0.571301968807607,0.220868540951614,0.244981598429908,0.191690942036473,0,0,0.638436690425939,0.768032666281217,0.395658863190582,0.548925861614458,0,0.279182999001381,0,0.45839474333043,0.294628585473668,0.569486723196412,0,1.21161909333094,0.982430281388212,1.73918693221007,0,1.3599426674155,0,1.29955283489534,0.896053774194671,0.421333260395256,1.36344258062446,0.259786004602869,0,0,0,0,0,1.08245520505607,0.506719730950197,0.505524445014783,0.5709193985953,0.517875767294343,0.148442139064825,0.520455980298408,0.304465478312141,0.461230994512117,0.904335843315735,0.823120949949934,0.502666365318702,1.23597483867187,0.144599356919912,0.884610551949874,0,0.220841518460394,0,1.86391761218122,0,0,0.766371165625774,1.43778149407104,1.79970819298022,1.52484272487678,0.449371918214468,0.457500602818626,0.251308704225729,0.521472960576829,1.02286182932132,0,0.486723789203273,0.305518091550949,0.870848794270651,0.252722758433675,0.420883711772948,0.910843100738926,0.459804208866946,0.360124259610698,0.452114453507145,0.544291993210623,0.2562274405697,0.374806898238915,0,0.431135985865684,0.189106080167819,0.351902248327898,0.43839146485515,0,1.39300866608867,0.205782136407943,0,2.1066395619397,0.257347907114715,1.70498099637356,0.828503090142008,0.234526059981096,0.180062061461015,0.23674473558521,0.196764231747404,0.462801338662135,0,0.268273401399619,0.233530684734339,0,0.164167464079095,0.243206428637567,0,0.219550115291051,0.134206418760372,0.630869845692382,0.308713837137853,0.660837565967596,0,0.639864751605702,0.928946687441754,0.902072229254653,0.605050573870028,0.667134131534611,0.190225626112559,0,0,0,0.795825888164603,0.58489226135736,0,0.432276099749388,0.796565093017469,0.569003702859245,0.456994050438915,0,1.22190796707189,0,0.631222379012867,0.126473074248515,0.442830443938806,0.470996183524124,0.616985819609003,0.296452627087149,0.667380422864376,0.589676985339609,0.899448449539415,0.811440485554012,0.482354319504834,0.763877555344259,0.287696137450811,0.810676133875177,0.274561413188081,1.43768206527355,2.23284568601102,0.936113019343682,0.757736633841335,0.538192240565737,0.964887042726734,0.184753190166605,0.568474235311454,0.488894929326078,0.509235257325564,0,0.502518772325447,0.476087281772027,0.390267295715598,0,0,0,0.163863314715738,0,0.578596234326046,1.50791283939272,0.54390568381871,0,0.275936746304732,0.321101179975584,0.468846746368813,0.655739781506702,0.757412781613119,0.94652465824877,1.17131623288992,0.646270193198397,1.19484398976276,0.222798674082394,1.13230612315533,0.404810701674894,1.16902343164525,2.37172666767914,0,0.425820255624806,0.534196811001766,0,0.164970122972535,0,0.485561272309963,0.302323556964751,0.377210159511796,0.295301892880773,0,0.516856586336442,1.81766864738753,0,0.948110273807448,0,0,0.340439605753788,0.18006109403131,0.517434735131018,0.643011105094777,0.532020700926821,0.178368817602071,0.164549020602121,0,1.17335854031855,0.42366414172764,0.220528398054962,0.49465875882444,0.484393280087717,0.663442174209714,0.596861720015682,0.656563598980245,0,0.556275906031529,0.170870880797853,1.03193433981611,0.925972636848558,0.565105371014073,0.956859594047176,0.686334519619568,1.86976272993241,2.51912614182584,2.07299960706636,0.954670618015114,1.10717597753397,0.609958401380546,0.86404272657441,0.627264888043406,0.218362563746178,0.809186078308924,0.495920734352016,0.523511883968059,0.259229946583586,0,0.56369293868419,0.897099276263873,0.165458490457098,0.583353565032143,0.516639293910924,0.337912250981556,0,0.5208175393758,1.04859344425711,0.241584120826006,0.864090018773596,1.89606672376907,0.405450430580328,0.410843828659309,0.25984164595559,1.07416017400489,1.19208812868759,0.841368146639782,1.18151621739662,1.51449674922221,0.762068066549998,0.504130925684203,0.877120926657772,0.865906574762965,1.05189211963412,1.58711268530648,1.10992976687032,0.986852422704233,2.3503846290971,0.19318959403219,0.375364950902364,0.183151624267265,2.57242054894879,0,0.564751842617067,0.460325236507177,2.86447756719698,0.859265911718438,0.685082519770642,0,2.02506750069542,0.900642406448441,0,0.51776031175182,1.3492355185943,0.798049746802062,0.853668028770671,0.486213434136588,0.628839487883947,0.735374033800057,0.222246727801615,0,0,0.758091635291392,0.25347929989024,0.754505365544305,0.280924522409647,0.704276676453562,0.229741875822453,0.476293691283074,0.811190281613988,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0.532427418478012,0,0.872078499793971,0.376437521661322,0.507687647350059,0.365855945745545,0,0.407412341537585,0,0.237270036248348,0.394017929502254,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,0.467863216890817,0.644613162144895,0.191288332068843,0.661774257358546,0.463735671240843|short_description=p3@Tnpo3}} | ||
|EntrezGene=320938 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=E9Q0H8 | |||
|association_with_transcript=5bp_to_ENSMUST00000170350_5end | |||
|description=CAGE_peak_3_at_Tnpo3_5end | |||
|id=chr6:29559794..29559805,- | |||
|ontology_enrichment_celltype=CL:0000838!1.94e-07!12;CL:0000542!2.22e-07!13;CL:0000051!2.22e-07!13;CL:0000791!5.00e-07!9;CL:0000789!5.00e-07!9;CL:0002420!5.00e-07!9;CL:0002419!5.00e-07!9;CL:0000790!5.00e-07!9;CL:0000084!6.56e-07!11;CL:0000827!6.56e-07!11;CL:0000988!7.73e-07!32;CL:0002032!7.73e-07!32;CL:0000037!7.73e-07!32;CL:0000566!7.73e-07!32;CL:0000837!7.73e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.55e-15,12;CL:0000791,1.52e-14,9;CL:0000789,1.52e-14,9;CL:0002420,1.52e-14,9;CL:0002419,1.52e-14,9;CL:0000790,1.52e-14,9;CL:0000084,1.16e-13,11;CL:0000827,1.16e-13,11;CL:0000542,1.56e-13,13;CL:0000051,1.56e-13,13;CL:0000624,6.43e-13,8;CL:0000988,3.18e-12,32;CL:0002032,3.18e-12,32;CL:0000037,3.18e-12,32;CL:0000837,3.18e-12,32;CL:0000738,1.42e-11,17;CL:0002087,1.42e-11,17;CL:0002320,2.49e-11,46;CL:0000134,2.49e-11,46;CL:0000034,1.20e-10,97;CL:0000893,1.32e-10,6;CL:0002489,1.32e-10,6;CL:0000898,1.32e-10,6;CL:0000809,1.32e-10,6;CL:0000810,1.32e-10,6;CL:0000895,1.32e-10,6;CL:0000808,1.32e-10,6;CL:0000894,1.32e-10,6;CL:0000806,1.32e-10,6;CL:0000807,1.32e-10,6;CL:0000805,1.32e-10,6;CL:0002425,1.32e-10,6;CL:0002436,1.32e-10,6;CL:0002427,1.32e-10,6;CL:0002428,1.32e-10,6;CL:0002429,1.32e-10,6;CL:0002433,1.32e-10,6;CL:0002431,1.32e-10,6;CL:0002432,1.32e-10,6;CL:0000219,9.86e-10,54;CL:0002031,3.03e-08,25;CL:0000723,1.89e-07,91;CL:0000048,1.89e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!5.09e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.49e-11,46;UBERON:0006562,3.08e-08,24;UBERON:0001557,3.08e-08,24;UBERON:0001042,3.08e-08,24;UBERON:0008814,3.08e-08,24;UBERON:0009145,3.08e-08,24;UBERON:0000072,4.68e-08,27;UBERON:0000077,1.83e-07,35;UBERON:0002370,2.63e-07,23;UBERON:0000974,2.63e-07,23;UBERON:0004807,2.63e-07,23;UBERON:0005058,2.63e-07,23;UBERON:0003351,2.63e-07,23;UBERON:0009113,2.63e-07,23;UBERON:0003295,2.63e-07,23;UBERON:0009722,2.63e-07,23;UBERON:0005562,2.63e-07,23;UBERON:0007690,2.63e-07,23;UBERON:0003408,6.98e-07,24 | |||
|phase1_expression=0.320297694209588,0.697950815278722,0,1.20985684522732,0,1.17515490338323,0.467225281191051,1.03298658753261,18.161745157565,15.2141942109296,4.28044920563762,3.5099749957948,2.05440875917447,1.39872643870396,0.333109761815663,0.809901069559304,0.699561878128147,0.788655413395594,0.548457734422955,0.84877930359606,0.510259740906419,0.496454756004426,1.04479915655574,0.47997726838022,0.22940928106717,0.57423196411502,0.430761996159075,0.430942465371778,0,0,0,0,1.84519436275371,0,0,0.166234645358492,0.816677425049476,1.25559489221072,0.7813353445238,1.0470474879476,0.588231488031014,0,1.45653105909346,0.251793635951155,0.304130793658544,0.183546752161682,0,0,0,0,0.279972843250725,0,1.51004345451963,5.80289713609076,7.05796978199174,0.257259436035947,1.14613375975503,0.515672092277442,0,0.528990979272033,0.633831403506179,0,0,0.449949858640699,0,0,0,0,0.622137673850866,0.135005938331691,0,0.571301968807607,0.220868540951614,0.244981598429908,0.191690942036473,0,0,0.638436690425939,0.768032666281217,0.395658863190582,0.548925861614458,0,0.279182999001381,0,0.45839474333043,0.294628585473668,0.569486723196412,0,1.21161909333094,0.982430281388212,1.73918693221007,0,1.3599426674155,0,1.29955283489534,0.896053774194671,0.421333260395256,1.36344258062446,0.259786004602869,0,0,0,0,0,1.08245520505607,0.506719730950197,0.505524445014783,0.5709193985953,0.517875767294343,0.148442139064825,0.520455980298408,0.304465478312141,0.461230994512117,0.904335843315735,0.823120949949934,0.502666365318702,1.23597483867187,0.144599356919912,0.884610551949874,0,0.220841518460394,0,1.86391761218122,0,0,0.766371165625774,1.43778149407104,1.79970819298022,1.52484272487678,0.449371918214468,0.457500602818626,0.251308704225729,0.521472960576829,1.02286182932132,0,0.486723789203273,0.305518091550949,0.870848794270651,0.252722758433675,0.420883711772948,0.910843100738926,0.459804208866946,0.360124259610698,0.452114453507145,0.544291993210623,0.2562274405697,0.374806898238915,0,0.431135985865684,0.189106080167819,0.351902248327898,0.43839146485515,0,1.39300866608867,0.205782136407943,0,2.1066395619397,0.257347907114715,1.70498099637356,0.828503090142008,0.234526059981096,0.180062061461015,0.23674473558521,0.196764231747404,0.462801338662135,0,0.268273401399619,0.233530684734339,0,0.164167464079095,0.243206428637567,0,0.219550115291051,0.134206418760372,0.630869845692382,0.308713837137853,0.660837565967596,0,0.639864751605702,0.928946687441754,0.902072229254653,0.605050573870028,0.667134131534611,0.190225626112559,0,0,0,0.795825888164603,0.58489226135736,0,0.432276099749388,0.796565093017469,0.569003702859245,0.456994050438915,0,1.22190796707189,0,0.631222379012867,0.126473074248515,0.442830443938806,0.470996183524124,0.616985819609003,0.296452627087149,0.667380422864376,0.589676985339609,0.899448449539415,0.811440485554012,0.482354319504834,0.763877555344259,0.287696137450811,0.810676133875177,0.274561413188081,1.43768206527355,2.23284568601102,0.936113019343682,0.757736633841335,0.538192240565737,0.964887042726734,0.184753190166605,0.568474235311454,0.488894929326078,0.509235257325564,0,0.502518772325447,0.476087281772027,0.390267295715598,0,0,0,0.163863314715738,0,0.578596234326046,1.50791283939272,0.54390568381871,0,0.275936746304732,0.321101179975584,0.468846746368813,0.655739781506702,0.757412781613119,0.94652465824877,1.17131623288992,0.646270193198397,1.19484398976276,0.222798674082394,1.13230612315533,0.404810701674894,1.16902343164525,2.37172666767914,0,0.425820255624806,0.534196811001766,0,0.164970122972535,0,0.485561272309963,0.302323556964751,0.377210159511796,0.295301892880773,0,0.516856586336442,1.81766864738753,0,0.948110273807448,0,0,0.340439605753788,0.18006109403131,0.517434735131018,0.643011105094777,0.532020700926821,0.178368817602071,0.164549020602121,0,1.17335854031855,0.42366414172764,0.220528398054962,0.49465875882444,0.484393280087717,0.663442174209714,0.596861720015682,0.656563598980245,0,0.556275906031529,0.170870880797853,1.03193433981611,0.925972636848558,0.565105371014073,0.956859594047176,0.686334519619568,1.86976272993241,2.51912614182584,2.07299960706636,0.954670618015114,1.10717597753397,0.609958401380546,0.86404272657441,0.627264888043406,0.218362563746178,0.809186078308924,0.495920734352016,0.523511883968059,0.259229946583586,0,0.56369293868419,0.897099276263873,0.165458490457098,0.583353565032143,0.516639293910924,0.337912250981556,0,0.5208175393758,1.04859344425711,0.241584120826006,0.864090018773596,1.89606672376907,0.405450430580328,0.410843828659309,0.25984164595559,1.07416017400489,1.19208812868759,0.841368146639782,1.18151621739662,1.51449674922221,0.762068066549998,0.504130925684203,0.877120926657772,0.865906574762965,1.05189211963412,1.58711268530648,1.10992976687032,0.986852422704233,2.3503846290971,0.19318959403219,0.375364950902364,0.183151624267265,2.57242054894879,0,0.564751842617067,0.460325236507177,2.86447756719698,0.859265911718438,0.685082519770642,0,2.02506750069542,0.900642406448441,0,0.51776031175182,1.3492355185943,0.798049746802062,0.853668028770671,0.486213434136588,0.628839487883947,0.735374033800057,0.222246727801615,0,0,0.758091635291392,0.25347929989024,0.754505365544305,0.280924522409647,0.704276676453562,0.229741875822453,0.476293691283074,0.811190281613988,0.38581844092741,0.412085900803307,0.147198920134397,0.342869252385415,0.532427418478012,0,0.872078499793971,0.376437521661322,0.507687647350059,0.365855945745545,0,0.407412341537585,0,0.237270036248348,0.394017929502254,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,0.467863216890817,0.644613162144895,0.191288332068843,0.661774257358546,0.463735671240843 | |||
|short_description=p3@Tnpo3 | |||
}} |
Revision as of 09:34, 14 September 2013
Short description: | p3@Tnpo3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tnpo3_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 5bp_to_ENSMUST00000170350_5end |
EntrezGene: | Tnpo3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.49e-11 | 46 |
pharynx | 3.08e-08 | 24 |
upper respiratory tract | 3.08e-08 | 24 |
chordate pharynx | 3.08e-08 | 24 |
pharyngeal arch system | 3.08e-08 | 24 |
pharyngeal region of foregut | 3.08e-08 | 24 |
segment of respiratory tract | 4.68e-08 | 27 |
mixed endoderm/mesoderm-derived structure | 1.83e-07 | 35 |
thymus | 2.63e-07 | 23 |
neck | 2.63e-07 | 23 |
respiratory system epithelium | 2.63e-07 | 23 |
hemolymphoid system gland | 2.63e-07 | 23 |
pharyngeal epithelium | 2.63e-07 | 23 |
thymic region | 2.63e-07 | 23 |
pharyngeal gland | 2.63e-07 | 23 |
entire pharyngeal arch endoderm | 2.63e-07 | 23 |
thymus primordium | 2.63e-07 | 23 |
early pharyngeal endoderm | 2.63e-07 | 23 |
gland of gut | 6.98e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.