FFCP PHASE1:Mm9::chr7:134376741..134376831,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=233887|HGNC=|UniProt=Q3US17|association_with_transcript=0bp_to_ENSMUST00000056232,uc009jur.1,uc009jus.1_5end|description=CAGE_peak_1_at_Zfp553_5end|id=chr7:134376741..134376831,+|ontology_enrichment_celltype=CL:0000540!4.98e-10!33;CL:0000047!4.98e-10!33;CL:0000031!4.98e-10!33;CL:0000404!4.98e-10!33;CL:0000117!5.35e-09!23;CL:0000337!5.35e-09!23;CL:0002319!6.10e-09!43;CL:0000221!1.19e-08!44;CL:0000133!1.19e-08!44;CL:0000393!8.21e-07!39;CL:0000211!8.21e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,4.98e-10,33;CL:0000047,4.98e-10,33;CL:0000031,4.98e-10,33;CL:0000404,4.98e-10,33;CL:0000117,5.35e-09,23;CL:0000337,5.35e-09,23;CL:0002319,6.10e-09,43;CL:0000221,1.19e-08,44;CL:0000133,1.19e-08,44;CL:0000393,8.21e-07,39;CL:0000211,8.21e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.94e-20!94;UBERON:0007811!9.58e-19!86;UBERON:0001017!2.38e-16!73;UBERON:0005743!2.38e-16!73;UBERON:0000073!2.94e-15!75;UBERON:0001016!2.94e-15!75;UBERON:0002346!2.45e-13!71;UBERON:0003075!2.45e-13!71;UBERON:0007284!2.45e-13!71;UBERON:0001049!2.46e-13!52;UBERON:0005068!2.46e-13!52;UBERON:0006241!2.46e-13!52;UBERON:0007135!2.46e-13!52;UBERON:0004121!4.80e-13!102;UBERON:0000924!4.80e-13!102;UBERON:0006601!4.80e-13!102;UBERON:0003056!7.22e-13!49;UBERON:0000033!9.29e-13!63;UBERON:0002616!2.06e-12!49;UBERON:0000955!2.21e-12!50;UBERON:0006238!2.21e-12!50;UBERON:0003080!2.61e-11!40;UBERON:0002780!2.68e-11!39;UBERON:0001890!2.68e-11!39;UBERON:0006240!2.68e-11!39;UBERON:0002020!2.63e-08!34;UBERON:0002791!2.09e-07!29;UBERON:0003528!2.09e-07!29;UBERON:0001893!2.09e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.38e-16,73;UBERON:0001016,2.94e-15,75;UBERON:0002346,4.75e-15,64;UBERON:0003075,4.75e-15,64;UBERON:0007284,4.75e-15,64;UBERON:0004121,3.40e-14,95;UBERON:0000924,3.40e-14,95;UBERON:0006601,3.40e-14,95;UBERON:0000073,2.02e-13,54;UBERON:0001049,2.46e-13,52;UBERON:0005068,2.46e-13,52;UBERON:0006241,2.46e-13,52;UBERON:0007135,2.46e-13,52;UBERON:0003056,7.22e-13,49;UBERON:0010371,1.03e-12,73;UBERON:0002616,2.64e-12,46;UBERON:0000955,2.88e-12,47;UBERON:0006238,2.88e-12,47;UBERON:0003080,2.61e-11,40;UBERON:0002780,2.68e-11,39;UBERON:0001890,2.68e-11,39;UBERON:0006240,2.68e-11,39;UBERON:0002020,2.63e-08,34;UBERON:0000153,5.97e-08,43;UBERON:0010314,1.50e-07,92;UBERON:0003528,2.09e-07,29;UBERON:0002791,2.09e-07,29;UBERON:0001893,2.09e-07,29|phase1_expression=11.69086583865,9.07336059862339,7.27998783023258,8.46899791659124,11.520601788766,19.6418748136911,18.4553986070465,14.332688902015,23.9340827657833,21.2998718953014,22.6007718057667,22.7350653136709,19.174481752295,15.5608316305815,10.9926221399169,8.70643649776252,9.79386629379405,12.7762176970086,13.0258711925452,17.3999757237192,9.35476191661768,14.4964788753293,8.61959304158487,8.95957567643077,10.3234176480227,10.9104073181854,12.4920978886132,10.1271479362368,6.65081968097309,7.81293402255785,7.98229838359097,23.4961349180064,14.7615549020297,0,12.4206196493048,13.9637102101134,12.8626694445293,2.92972141515835,2.3440060335714,1.57057123192139,2.35292595212406,3.41522742479223,4.85510353031154,9.81995180209503,9.7321853970734,11.1963518818626,13.3006528539167,17.4420125104357,12.5221124158649,14.387812531497,10.6389680435276,8.62515386189829,8.55691290894455,7.97898356212479,7.39406358113421,3.60163210450326,7.16333599846892,3.09403255366465,25.6941905291689,32.797440714866,38.0298842103708,18.6364492638023,16.8966011261116,9.44894703145469,6.92206453796882,5.6838409195688,10.4860038681442,17.6740420447915,28.9294018340653,26.8661817280064,29.8661445118962,13.9968982357864,12.3686382932904,25.3555954374955,23.5779858704861,29.4150011715207,13.2139057199266,11.6195477657521,13.5173749265494,28.2236655742615,23.2378614750121,25.0038417867245,8.65467296904281,14.069065250792,16.5022107598955,14.4368006882097,12.6710795911202,22.927131836512,9.0114170066489,6.87701196971748,8.11620568364698,3.44169550792555,6.11974200336975,4.31762553310254,4.54843492213368,3.58421509677868,5.75822122540183,7.49893419343454,5.71529210126311,7.77347063922748,9.85903938436764,6.41632387071589,35.6727335589304,49.7746692207332,11.2575341325831,7.09407623330276,6.0662933401774,6.8510327831436,8.02707439306232,10.0940654564081,16.1341353892506,9.13396434936424,10.1470818792666,7.38540938707851,9.05433044944927,11.1843266283411,10.1349936771093,5.92857363371638,3.5384422077995,7.117741397686,8.17113618303456,3.87900202508178,7.45567044872489,16.1029438356351,17.8029700791437,7.40825460104915,3.47463861067169,4.19931911695385,4.19331749341113,12.5824137100051,15.5550204958333,29.1518096901845,11.8200537730748,12.5300574091862,12.259494629014,14.1149898868949,13.7483141197927,11.1966273549084,12.6361379216837,10.9429765060966,19.9084277732937,20.4612872945791,14.5850325142333,17.3310540511072,15.2401758098974,13.9643955110486,15.7418897260344,8.2785078636485,23.7124792226126,20.8016688184601,20.4103304030181,17.75485432663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| ||
|EntrezGene=233887 | |||
|HGNC= | |||
|UniProt=Q3US17 | |||
|association_with_transcript=0bp_to_ENSMUST00000056232,uc009jur.1,uc009jus.1_5end | |||
|description=CAGE_peak_1_at_Zfp553_5end | |||
|id=chr7:134376741..134376831,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.98e-10!33;CL:0000047!4.98e-10!33;CL:0000031!4.98e-10!33;CL:0000404!4.98e-10!33;CL:0000117!5.35e-09!23;CL:0000337!5.35e-09!23;CL:0002319!6.10e-09!43;CL:0000221!1.19e-08!44;CL:0000133!1.19e-08!44;CL:0000393!8.21e-07!39;CL:0000211!8.21e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.98e-10,33;CL:0000047,4.98e-10,33;CL:0000031,4.98e-10,33;CL:0000404,4.98e-10,33;CL:0000117,5.35e-09,23;CL:0000337,5.35e-09,23;CL:0002319,6.10e-09,43;CL:0000221,1.19e-08,44;CL:0000133,1.19e-08,44;CL:0000393,8.21e-07,39;CL:0000211,8.21e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.94e-20!94;UBERON:0007811!9.58e-19!86;UBERON:0001017!2.38e-16!73;UBERON:0005743!2.38e-16!73;UBERON:0000073!2.94e-15!75;UBERON:0001016!2.94e-15!75;UBERON:0002346!2.45e-13!71;UBERON:0003075!2.45e-13!71;UBERON:0007284!2.45e-13!71;UBERON:0001049!2.46e-13!52;UBERON:0005068!2.46e-13!52;UBERON:0006241!2.46e-13!52;UBERON:0007135!2.46e-13!52;UBERON:0004121!4.80e-13!102;UBERON:0000924!4.80e-13!102;UBERON:0006601!4.80e-13!102;UBERON:0003056!7.22e-13!49;UBERON:0000033!9.29e-13!63;UBERON:0002616!2.06e-12!49;UBERON:0000955!2.21e-12!50;UBERON:0006238!2.21e-12!50;UBERON:0003080!2.61e-11!40;UBERON:0002780!2.68e-11!39;UBERON:0001890!2.68e-11!39;UBERON:0006240!2.68e-11!39;UBERON:0002020!2.63e-08!34;UBERON:0002791!2.09e-07!29;UBERON:0003528!2.09e-07!29;UBERON:0001893!2.09e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.38e-16,73;UBERON:0001016,2.94e-15,75;UBERON:0002346,4.75e-15,64;UBERON:0003075,4.75e-15,64;UBERON:0007284,4.75e-15,64;UBERON:0004121,3.40e-14,95;UBERON:0000924,3.40e-14,95;UBERON:0006601,3.40e-14,95;UBERON:0000073,2.02e-13,54;UBERON:0001049,2.46e-13,52;UBERON:0005068,2.46e-13,52;UBERON:0006241,2.46e-13,52;UBERON:0007135,2.46e-13,52;UBERON:0003056,7.22e-13,49;UBERON:0010371,1.03e-12,73;UBERON:0002616,2.64e-12,46;UBERON:0000955,2.88e-12,47;UBERON:0006238,2.88e-12,47;UBERON:0003080,2.61e-11,40;UBERON:0002780,2.68e-11,39;UBERON:0001890,2.68e-11,39;UBERON:0006240,2.68e-11,39;UBERON:0002020,2.63e-08,34;UBERON:0000153,5.97e-08,43;UBERON:0010314,1.50e-07,92;UBERON:0003528,2.09e-07,29;UBERON:0002791,2.09e-07,29;UBERON:0001893,2.09e-07,29 | |||
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| |||
|short_description=p1@Zfp553 | |||
}} |
Revision as of 11:55, 14 September 2013
Short description: | p1@Zfp553 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zfp553_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000056232, uc009jur.1, uc009jus.1_5end |
EntrezGene: | Zfp553 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.98e-10 | 33 |
neuronal stem cell | 4.98e-10 | 33 |
neuroblast | 4.98e-10 | 33 |
electrically signaling cell | 4.98e-10 | 33 |
CNS neuron (sensu Vertebrata) | 5.35e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.35e-09 | 23 |
neural cell | 6.10e-09 | 43 |
ectodermal cell | 1.19e-08 | 44 |
neurectodermal cell | 1.19e-08 | 44 |
electrically responsive cell | 8.21e-07 | 39 |
electrically active cell | 8.21e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.38e-16 | 73 |
nervous system | 2.94e-15 | 75 |
neurectoderm | 4.75e-15 | 64 |
neural plate | 4.75e-15 | 64 |
presumptive neural plate | 4.75e-15 | 64 |
ectoderm-derived structure | 3.40e-14 | 95 |
ectoderm | 3.40e-14 | 95 |
presumptive ectoderm | 3.40e-14 | 95 |
regional part of nervous system | 2.02e-13 | 54 |
neural tube | 2.46e-13 | 52 |
neural rod | 2.46e-13 | 52 |
future spinal cord | 2.46e-13 | 52 |
neural keel | 2.46e-13 | 52 |
pre-chordal neural plate | 7.22e-13 | 49 |
ecto-epithelium | 1.03e-12 | 73 |
regional part of brain | 2.64e-12 | 46 |
brain | 2.88e-12 | 47 |
future brain | 2.88e-12 | 47 |
anterior neural tube | 2.61e-11 | 40 |
regional part of forebrain | 2.68e-11 | 39 |
forebrain | 2.68e-11 | 39 |
future forebrain | 2.68e-11 | 39 |
gray matter | 2.63e-08 | 34 |
anterior region of body | 5.97e-08 | 43 |
structure with developmental contribution from neural crest | 1.50e-07 | 92 |
brain grey matter | 2.09e-07 | 29 |
regional part of telencephalon | 2.09e-07 | 29 |
telencephalon | 2.09e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.