FFCP PHASE1:Mm9::chr9:60535684..60535753,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=102747|HGNC=|MCL_coexpression_id=376|UniProt=|association_with_transcript=0bp_to_ENSMUST00000128877_5end|description=CAGE_peak_1_at_Lrrc49_5end|id=chr9:60535684..60535753,-|ontology_enrichment_celltype=CL:0000540!3.12e-13!33;CL:0000047!3.12e-13!33;CL:0000031!3.12e-13!33;CL:0000404!3.12e-13!33;CL:0000117!7.19e-12!23;CL:0000337!7.19e-12!23;CL:0000393!7.78e-12!39;CL:0000211!7.78e-12!39;CL:0002319!1.46e-10!43;CL:0000221!1.56e-10!44;CL:0000133!1.56e-10!44;CL:0000055!2.54e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.75e-13,33;CL:0000047,1.75e-13,33;CL:0000031,1.75e-13,33;CL:0000404,1.75e-13,33;CL:0000117,4.31e-12,23;CL:0000337,4.31e-12,23;CL:0000393,4.67e-12,39;CL:0000211,4.67e-12,39;CL:0002319,1.41e-10,43;CL:0000221,1.50e-10,44;CL:0000133,1.50e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.30e-27!73;UBERON:0005743!1.30e-27!73;UBERON:0000073!4.98e-27!75;UBERON:0001016!4.98e-27!75;UBERON:0002346!1.03e-26!71;UBERON:0003075!1.03e-26!71;UBERON:0007284!1.03e-26!71;UBERON:0004121!1.64e-25!102;UBERON:0000924!1.64e-25!102;UBERON:0006601!1.64e-25!102;UBERON:0000033!3.06e-25!63;UBERON:0003056!1.37e-24!49;UBERON:0001049!4.03e-22!52;UBERON:0005068!4.03e-22!52;UBERON:0006241!4.03e-22!52;UBERON:0007135!4.03e-22!52;UBERON:0000955!5.70e-22!50;UBERON:0006238!5.70e-22!50;UBERON:0002616!2.59e-21!49;UBERON:0003080!2.91e-19!40;UBERON:0002780!1.38e-18!39;UBERON:0001890!1.38e-18!39;UBERON:0006240!1.38e-18!39;UBERON:0002020!1.13e-15!34;UBERON:0002791!6.28e-14!29;UBERON:0003528!6.28e-14!29;UBERON:0001893!6.28e-14!29;UBERON:0000153!2.14e-10!94;UBERON:0007811!4.17e-10!86;UBERON:0000956!1.95e-09!21;UBERON:0001869!1.95e-09!21;UBERON:0000203!1.95e-09!21;UBERON:0002619!1.11e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.79e-29,64;UBERON:0003075,6.79e-29,64;UBERON:0007284,6.79e-29,64;UBERON:0001017,6.19e-28,73;UBERON:0001016,2.42e-27,75;UBERON:0004121,2.48e-26,95;UBERON:0000924,2.48e-26,95;UBERON:0006601,2.48e-26,95;UBERON:0003056,4.34e-25,49;UBERON:0000073,1.68e-23,54;UBERON:0010371,2.41e-23,73;UBERON:0001049,2.56e-22,52;UBERON:0005068,2.56e-22,52;UBERON:0006241,2.56e-22,52;UBERON:0007135,2.56e-22,52;UBERON:0000955,1.49e-20,47;UBERON:0006238,1.49e-20,47;UBERON:0010314,3.34e-20,92;UBERON:0002616,6.77e-20,46;UBERON:0003080,1.21e-19,40;UBERON:0002780,5.92e-19,39;UBERON:0001890,5.92e-19,39;UBERON:0006240,5.92e-19,39;UBERON:0002020,5.59e-16,34;UBERON:0003528,3.40e-14,29;UBERON:0002791,3.40e-14,29;UBERON:0001893,3.40e-14,29;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0002619,8.18e-08,17|phase1_expression=4.00372117761985,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,0.516493293766305,0,0,0,0,0,0,0,0.202475267389826,0,0.473193248037357,0.137114433605739,0.42438965179803,33.0818398687661,0.893618560807968,0,0.47997726838022,0.45881856213434,0,0,0.215471232685889,0.570070258369122,0,0.886922042621219,0,0,0,0,0.664938581433969,0.204169356262369,0,0,0.523523743973798,0,0,0,4.15459499319405,3.95370031756107,3.85448179539531,0.782391344348039,3.48840250208714,1.31811709640683,3.30530828426282,4.75953833526233,2.87505128729943,0,0,0,1.54355661621568,3.43840127926508,3.09403255366465,28.3243045203437,33.8554226734101,19.0149421051854,0.338844532069132,1.77858959222228,0.449949858640699,0,0,3.89480143673926,3.45796474789399,23.226473157099,17.4157660447881,15.5640471400023,7.7125765789027,10.3808214247258,27.6829206225796,30.5747052548174,21.1420320920305,20.9220173898839,23.111408193419,25.3450779872802,37.3238194276449,43.9140689291566,34.3802824567462,11.725685958058,30.3891809417107,23.6837284054056,17.6777151284201,22.067610523861,21.4359362699096,1.66597625333005,4.53429360640713,3.76823835312181,0.860423876981386,0,0,0,0,5.33688796500657,2.72688516124892,1.81850203222008,2.47337702157238,4.22530259330042,1.28326477414318,0,0,0.216491041011214,0.506719730950197,1.51657333504435,5.02409070763864,1.55362730188303,3.11728492036132,2.94925055502431,4.56698217468212,2.53677046981664,3.16517545160507,5.99702406392095,2.13633205260448,1.23597483867187,3.18118585223806,0,2.91180329905337,0.662524555381181,2.90925151881133,1.86391761218122,14.3462590535658,15.0801628905688,0.510914110417183,1.1981512450592,0,1.14363204365758,36.0995440965623,30.1950397860293,43.0994427747125,30.2454317134561,26.5944075623544,33.6616632186487,27.418773458451,5.29564692021645,3.23458123586242,2.27450482590307,6.52369753248069,30.5783040962354,26.6686441142829,47.1762780090015,41.7452345404931,58.4433527709906,52.3985115965036,35.3255501590178,18.8853460639481,12.287375597172,8.88798576788751,5.63043597324636,3.28793598641362,3.89266148915837,2.089512999133,4.7329891373827,7.16523360546575,0,0.51469581422943,0,3.10688658803253,2.11073453982987,3.42117916775928,3.07768156260773,1.77087808572663,1.85120535464854,2.55787339225449,3.21928081679543,1.86824547787471,1.48103864922132,1.80584210487005,1.37816976227955,1.169599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| ||
|EntrezGene=102747 | |||
|HGNC= | |||
|MCL_coexpression_id=376 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000128877_5end | |||
|description=CAGE_peak_1_at_Lrrc49_5end | |||
|id=chr9:60535684..60535753,- | |||
|ontology_enrichment_celltype=CL:0000540!3.12e-13!33;CL:0000047!3.12e-13!33;CL:0000031!3.12e-13!33;CL:0000404!3.12e-13!33;CL:0000117!7.19e-12!23;CL:0000337!7.19e-12!23;CL:0000393!7.78e-12!39;CL:0000211!7.78e-12!39;CL:0002319!1.46e-10!43;CL:0000221!1.56e-10!44;CL:0000133!1.56e-10!44;CL:0000055!2.54e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.75e-13,33;CL:0000047,1.75e-13,33;CL:0000031,1.75e-13,33;CL:0000404,1.75e-13,33;CL:0000117,4.31e-12,23;CL:0000337,4.31e-12,23;CL:0000393,4.67e-12,39;CL:0000211,4.67e-12,39;CL:0002319,1.41e-10,43;CL:0000221,1.50e-10,44;CL:0000133,1.50e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.30e-27!73;UBERON:0005743!1.30e-27!73;UBERON:0000073!4.98e-27!75;UBERON:0001016!4.98e-27!75;UBERON:0002346!1.03e-26!71;UBERON:0003075!1.03e-26!71;UBERON:0007284!1.03e-26!71;UBERON:0004121!1.64e-25!102;UBERON:0000924!1.64e-25!102;UBERON:0006601!1.64e-25!102;UBERON:0000033!3.06e-25!63;UBERON:0003056!1.37e-24!49;UBERON:0001049!4.03e-22!52;UBERON:0005068!4.03e-22!52;UBERON:0006241!4.03e-22!52;UBERON:0007135!4.03e-22!52;UBERON:0000955!5.70e-22!50;UBERON:0006238!5.70e-22!50;UBERON:0002616!2.59e-21!49;UBERON:0003080!2.91e-19!40;UBERON:0002780!1.38e-18!39;UBERON:0001890!1.38e-18!39;UBERON:0006240!1.38e-18!39;UBERON:0002020!1.13e-15!34;UBERON:0002791!6.28e-14!29;UBERON:0003528!6.28e-14!29;UBERON:0001893!6.28e-14!29;UBERON:0000153!2.14e-10!94;UBERON:0007811!4.17e-10!86;UBERON:0000956!1.95e-09!21;UBERON:0001869!1.95e-09!21;UBERON:0000203!1.95e-09!21;UBERON:0002619!1.11e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,6.79e-29,64;UBERON:0003075,6.79e-29,64;UBERON:0007284,6.79e-29,64;UBERON:0001017,6.19e-28,73;UBERON:0001016,2.42e-27,75;UBERON:0004121,2.48e-26,95;UBERON:0000924,2.48e-26,95;UBERON:0006601,2.48e-26,95;UBERON:0003056,4.34e-25,49;UBERON:0000073,1.68e-23,54;UBERON:0010371,2.41e-23,73;UBERON:0001049,2.56e-22,52;UBERON:0005068,2.56e-22,52;UBERON:0006241,2.56e-22,52;UBERON:0007135,2.56e-22,52;UBERON:0000955,1.49e-20,47;UBERON:0006238,1.49e-20,47;UBERON:0010314,3.34e-20,92;UBERON:0002616,6.77e-20,46;UBERON:0003080,1.21e-19,40;UBERON:0002780,5.92e-19,39;UBERON:0001890,5.92e-19,39;UBERON:0006240,5.92e-19,39;UBERON:0002020,5.59e-16,34;UBERON:0003528,3.40e-14,29;UBERON:0002791,3.40e-14,29;UBERON:0001893,3.40e-14,29;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0002619,8.18e-08,17 | |||
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| |||
|short_description=p1@Lrrc49 | |||
}} |
Revision as of 18:25, 14 September 2013
Short description: | p1@Lrrc49 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lrrc49_5end |
Coexpression cluster: | MCL_coexpression_mm9:376 |
Association with transcript: | 0bp_to_ENSMUST00000128877_5end |
EntrezGene: | Lrrc49 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.75e-13 | 33 |
neuronal stem cell | 1.75e-13 | 33 |
neuroblast | 1.75e-13 | 33 |
electrically signaling cell | 1.75e-13 | 33 |
CNS neuron (sensu Vertebrata) | 4.31e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.31e-12 | 23 |
electrically responsive cell | 4.67e-12 | 39 |
electrically active cell | 4.67e-12 | 39 |
neural cell | 1.41e-10 | 43 |
ectodermal cell | 1.50e-10 | 44 |
neurectodermal cell | 1.50e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 6.79e-29 | 64 |
neural plate | 6.79e-29 | 64 |
presumptive neural plate | 6.79e-29 | 64 |
central nervous system | 6.19e-28 | 73 |
nervous system | 2.42e-27 | 75 |
ectoderm-derived structure | 2.48e-26 | 95 |
ectoderm | 2.48e-26 | 95 |
presumptive ectoderm | 2.48e-26 | 95 |
pre-chordal neural plate | 4.34e-25 | 49 |
regional part of nervous system | 1.68e-23 | 54 |
ecto-epithelium | 2.41e-23 | 73 |
neural tube | 2.56e-22 | 52 |
neural rod | 2.56e-22 | 52 |
future spinal cord | 2.56e-22 | 52 |
neural keel | 2.56e-22 | 52 |
brain | 1.49e-20 | 47 |
future brain | 1.49e-20 | 47 |
structure with developmental contribution from neural crest | 3.34e-20 | 92 |
regional part of brain | 6.77e-20 | 46 |
anterior neural tube | 1.21e-19 | 40 |
regional part of forebrain | 5.92e-19 | 39 |
forebrain | 5.92e-19 | 39 |
future forebrain | 5.92e-19 | 39 |
gray matter | 5.59e-16 | 34 |
brain grey matter | 3.40e-14 | 29 |
regional part of telencephalon | 3.40e-14 | 29 |
telencephalon | 3.40e-14 | 29 |
cerebral cortex | 1.32e-09 | 21 |
cerebral hemisphere | 1.32e-09 | 21 |
pallium | 1.32e-09 | 21 |
regional part of cerebral cortex | 8.18e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.