FFCP PHASE1:Hg19::chr1:112162433..112162469,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5906 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9855 | |||
|TSSclassifier=strong | |||
|UniProt=P62834,A8KAH9 | |||
|association_with_transcript=28bp_to_ENST00000369709,ENST00000436150,NM_001010935,NM_002884,uc001ebk.2,uc001ebl.2_5end | |||
|description=CAGE_peak_1_at_RAP1A_5end | |||
|id=chr1:112162433..112162469,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.09e-43!140;CL:0000037!2.06e-39!172;CL:0000566!2.06e-39!172;CL:0002031!8.31e-39!124;CL:0002032!6.20e-38!165;CL:0000837!6.20e-38!165;CL:0002087!1.05e-35!119;CL:0000988!1.12e-33!182;CL:0000766!3.93e-31!76;CL:0000839!1.21e-27!70;CL:0000763!4.49e-26!112;CL:0000049!4.49e-26!112;CL:0000557!6.99e-26!71;CL:0002009!5.30e-25!65;CL:0002194!2.75e-24!63;CL:0000576!2.75e-24!63;CL:0000040!2.75e-24!63;CL:0000559!2.75e-24!63;CL:0002057!2.37e-23!42;CL:0000860!7.35e-22!45;CL:0000134!2.62e-13!358;CL:0002320!3.36e-12!365;CL:0000838!9.39e-11!52;CL:0000542!1.18e-10!53;CL:0000051!1.18e-10!53;CL:0000791!5.89e-09!18;CL:0000789!5.89e-09!18;CL:0002420!5.89e-09!18;CL:0002419!5.89e-09!18;CL:0000790!5.89e-09!18;CL:0000048!1.64e-08!430;CL:0000723!5.57e-08!436;CL:0000219!1.40e-07!390;CL:0000034!2.12e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.69e-17;33!CL:0002057;5.69e-17;33!CL:0000473;5.34e-16;39!CL:0000234;5.34e-16;39!CL:0000576;3.00e-15;48!CL:0000766;8.09e-14;69!CL:0002087;1.27e-10;104!CL:0000738;1.20e-09;136!CL:0000791;5.94e-09;18!CL:0000789;5.94e-09;18!CL:0002419;5.94e-09;18!CL:0000763;3.21e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.50e-44,136;CL:0000037,1.89e-40,168;CL:0002031,3.05e-40,120;CL:0002032,5.55e-39,161;CL:0000837,5.55e-39,161;CL:0002087,4.28e-37,115;CL:0000988,6.55e-35,177;CL:0000766,4.77e-33,72;CL:0000839,1.67e-29,66;CL:0000557,1.31e-27,67;CL:0000763,3.47e-27,108;CL:0000049,3.47e-27,108;CL:0002009,7.98e-27,61;CL:0002194,4.08e-26,59;CL:0000576,4.08e-26,59;CL:0000040,4.08e-26,59;CL:0000559,4.08e-26,59;CL:0000473,2.57e-25,48;CL:0000234,2.57e-25,48;CL:0000860,2.37e-23,42;CL:0002057,2.37e-23,42;CL:0000134,1.63e-13,354;CL:0002320,2.17e-12,361;CL:0000838,9.39e-11,52;CL:0000542,1.18e-10,53;CL:0000051,1.18e-10,53;CL:0000791,5.89e-09,18;CL:0000789,5.89e-09,18;CL:0002420,5.89e-09,18;CL:0002419,5.89e-09,18;CL:0000790,5.89e-09,18;CL:0000048,1.64e-08,427;CL:0000723,5.59e-08,433;CL:0000219,1.04e-07,386;CL:0000034,2.13e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.88e-17;42!CL:0000790;5.94e-09;18!CL:0000049;6.98e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.37e-29!102;UBERON:0003061!4.37e-29!102;UBERON:0002193!3.24e-26!112;UBERON:0002371!8.43e-22!80;UBERON:0007023!7.46e-21!115;UBERON:0001474!1.40e-18!86;UBERON:0002405!3.47e-16!115;UBERON:0004765!2.49e-15!101;UBERON:0001434!2.49e-15!101;UBERON:0002384!6.27e-11!375;UBERON:0003081!1.60e-10!216;UBERON:0002204!3.24e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.97e-30,98;UBERON:0003061,1.97e-30,98;UBERON:0002193,2.47e-27,108;UBERON:0002371,4.13e-23,76;UBERON:0002405,1.45e-22,93;UBERON:0007023,9.34e-21,114;UBERON:0001474,1.24e-19,82;UBERON:0004765,1.17e-18,90;UBERON:0001434,2.40e-15,100;UBERON:0003081,3.13e-13,203;UBERON:0002384,4.22e-11,371;UBERON:0002204,5.47e-09,167;UBERON:0000926,1.02e-07,315;UBERON:0004120,1.02e-07,315;UBERON:0006603,1.02e-07,315 | |||
|phase1_expression=14.8976271001856,13.274232481241,12.9678051768293,17.0124607200322,20.113249249228,13.0850778615055,7.59899634504932,24.6370750636464,10.9697963843932,6.88055022204225,2.09340350391728,10.9220686065086,8.44054330331051,11.0152054134441,10.6047160232933,13.4465029290355,12.0538905604795,10.9546513558106,13.1741855673437,4.80172126499473,2.04000691244253,2.19418305034661,10.304495536718,10.5393307306121,8.03472893406738,39.276490554447,43.5133124084713,40.8508955017995,35.0094206395525,56.0390921221931,42.729250035237,8.27479102031034,4.819294700452,12.5716363456708,21.3809473601633,14.0747540162547,11.1568166947242,49.859586767869,44.7214117858416,47.3083698160557,58.2180233023803,54.7380295572075,53.0605669326424,59.3224814220624,67.2619179766081,45.3632194421216,52.5289623406847,41.9391245782262,53.888908535748,57.5384784644301,33.8132132618413,70.2352222769098,54.1250718756491,39.3745656986134,62.2961838333972,69.2731809516785,55.3999484617427,77.080155164664,63.3593657207768,50.7067862780228,54.9829928187175,60.6926392343558,44.0814683343806,57.5403413219137,74.0033558502889,49.9298997728203,49.2029576706504,58.2896903395644,54.2342235157009,56.2519107786252,47.8265607080361,63.3437533898611,68.355875687231,60.2077565989034,69.9468146884993,75.0577950919986,42.1232366799357,53.3127969587347,51.4321877430656,38.7617331488098,54.5031695525507,56.0778952057426,19.3595868907455,29.4914850081551,25.7957683620431,23.8968924637244,25.2249471832688,18.9668305184979,31.0691090208885,29.5756663905963,14.7995371968457,19.9660644386119,21.789574003138,26.4342657158052,82.3947587582858,16.5931973408299,40.7189224135634,47.1612915298998,52.2227807458753,39.7903859029814,38.7847497293973,44.5040937390649,31.1722765452658,69.8543564670038,60.9834228472913,76.4291936313493,63.0973002572486,59.4343723527133,58.5267064019452,24.9945614997588,24.5951515829405,43.1806597745228,31.2884648271947,29.1619502617787,32.4060123795428,43.3974782531678,41.7710338026094,53.6058814952903,52.8811156320761,39.1835459618639,37.7628403236723,48.4730542668671,56.7668198923203,54.5222963517822,28.7340671070395,46.4083414006273,64.8691117567627,44.5550902526659,43.0578715211447,31.5717200464502,24.3806866313962,13.4140171940727,18.6679340291554,4.69870898099936,19.5521785147997,8.83563765661025,29.4255800408907,18.0054902011975,11.4387128768522,8.20398770611487,6.67544371267758,11.1987109550544,4.00724817121796,5.56176664176644,110.995208629902,97.6867826248889,88.9488755871208,29.3343467895571,36.0356793791481,36.4028351302974,11.9257444420023,5.16140757063675,10.7613555498354,13.5673906061762,6.71199097935849,8.52865930014209,11.4947231595246,17.0555061051757,18.4998456597089,11.7152214467635,4.83395180530976,22.8081631715554,4.63717909341522,13.2358708924513,6.48113558305408,14.0200573406005,12.3491154944393,11.8242054507488,15.3316637465883,9.49265659568129,10.9921046358244,227.980122164389,236.545961130478,6.10531672999548,15.4061305025549,11.7766375848059,8.60659675285922,6.88407889797153,10.2853830837524,4.48542080113846,12.8098794875646,5.18001851676036,8.71390899119346,11.9892498142022,17.3269617300266,7.26515652695671,13.82822218752,3.98346434117454,8.11616199758833,13.1208518955223,11.3580997219369,10.9214083738701,8.41739310714284,11.2360645361799,14.4949461590974,8.84407084644729,10.4359038987523,7.12801714369232,8.65434252474949,4.55080680969013,3.59309070908119,10.7735112930602,9.25877047052535,12.4678851967882,11.8523957637826,12.8724874235588,8.41333129876942,18.6028780382434,8.61070251306537,14.5219024396626,15.8948925869671,6.90209520994125,17.3128249120577,7.72921620136887,19.7283867711485,5.40084263172052,19.0976530115949,6.81571190459109,16.7530815528985,15.8413135682436,8.52023022039874,22.3669658065361,17.8038621926012,19.519346169493,9.54611422067921,12.3325976017272,3.04934265323988,5.16866096453793,5.6935032006064,5.49403591581463,5.2987378683882,4.01475094983413,17.2094485562798,12.2215778256648,6.90674606762403,12.5379340568634,7.21879481669586,14.7883500049805,16.6898843177321,19.2808823906786,15.3308622098028,10.8939722046203,18.0325670524433,14.8314438976181,13.3430596285235,12.3119090222845,2.21446636387394,1.40241773803446,4.115740113314,2.94017422771084,21.5483559197112,14.7424082501644,14.7697476670351,9.71218818712231,6.51838724278502,10.4656364282101,13.4992851052609,12.3641928583382,10.1534262135747,11.6661440899747,3.58389135841357,4.15973914111831,4.3299402607582,9.04257158805599,8.6882433734508,8.08452107462013,9.72269576410883,11.0347408296067,4.74122638775565,4.29243081047436,53.1828733148778,43.0567847856197,47.8592342569705,23.4334584966942,31.076693716789,23.2511159477514,17.732587495164,11.3347236020445,12.2682457332868,36.9497428421958,41.3827639862162,38.3557013750428,39.9212270964983,40.2713362630152,9.65167993240969,5.34783795781589,5.86087236050235,10.2643467613623,8.7403368797825,10.2116639666932,11.1472308725925,5.04589879554123,4.79556075716608,11.2207577306054,8.27338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| |||
|short_description=p1@RAP1A | |||
}} |
Revision as of 20:10, 10 January 2014
Short description: | p1@RAP1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAP1A_5end |
Coexpression cluster: | NA |
Association with transcript: | 28bp_to_ENST00000369709, ENST00000436150, NM_001010935, NM_002884, uc001ebk.2, uc001ebl.2_5end |
EntrezGene: | RAP1A |
HGNC: | 9855 |
UniProt: | P62834A8KAH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.97e-30 | 98 |
blood island | 1.97e-30 | 98 |
hemolymphoid system | 2.47e-27 | 108 |
bone marrow | 4.13e-23 | 76 |
immune system | 1.45e-22 | 93 |
adult organism | 9.34e-21 | 114 |
bone element | 1.24e-19 | 82 |
skeletal element | 1.17e-18 | 90 |
skeletal system | 2.40e-15 | 100 |
lateral plate mesoderm | 3.13e-13 | 203 |
connective tissue | 4.22e-11 | 371 |
musculoskeletal system | 5.47e-09 | 167 |
mesoderm | 1.02e-07 | 315 |
mesoderm-derived structure | 1.02e-07 | 315 |
presumptive mesoderm | 1.02e-07 | 315 |