FFCP PHASE1:Hg19::chr10:104404712..104404726,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81603 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15579 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=43bp_to_ENST00000462202_5end | |||
|description=CAGE_peak_8_at_TRIM8_5end | |||
|id=chr10:104404712..104404726,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.62e-20!53;CL:0000051!3.62e-20!53;CL:0000838!5.63e-20!52;CL:0000084!2.20e-10!25;CL:0000827!2.20e-10!25;CL:0000738!1.93e-09!140;CL:0000791!3.98e-09!18;CL:0000789!3.98e-09!18;CL:0002420!3.98e-09!18;CL:0002419!3.98e-09!18;CL:0000790!3.98e-09!18;CL:0000945!4.63e-09!24;CL:0000826!4.63e-09!24;CL:0002087!1.46e-08!119;CL:0000988!8.15e-07!182;CL:0000236!9.40e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.04e-18;18!CL:0000789;1.04e-18;18!CL:0002419;1.04e-18;18!CL:0000624;2.37e-18;6!CL:0000084;2.72e-15;25!CL:0000542;4.95e-15;53!CL:0000236;4.97e-11;13!CL:0000898;2.66e-10;3!CL:0000784;9.08e-10;3!CL:0000815;1.33e-07;2!CL:0000792;1.33e-07;2!CL:0002677;1.33e-07;2!CL:0000945;4.27e-07;24!CL:0002575;4.64e-07;2!CL:0000625;7.07e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.19e-23,52;CL:0000542,4.29e-23,53;CL:0000051,4.29e-23,53;CL:0000791,3.04e-19,18;CL:0000789,3.04e-19,18;CL:0002420,3.04e-19,18;CL:0002419,3.04e-19,18;CL:0000790,3.04e-19,18;CL:0000624,1.48e-18,6;CL:0000084,1.48e-15,25;CL:0000827,1.48e-15,25;CL:0000738,7.81e-13,136;CL:0000988,1.19e-11,177;CL:0002087,1.86e-11,115;CL:0000037,9.79e-11,168;CL:0000236,2.32e-10,14;CL:0000898,5.56e-10,3;CL:0000784,1.03e-09,3;CL:0002031,9.30e-09,120;CL:0002032,4.84e-08,161;CL:0000837,4.84e-08,161;CL:0002575,1.56e-07,2;CL:0000815,1.89e-07,2;CL:0000792,1.89e-07,2;CL:0002677,1.89e-07,2;CL:0000945,3.49e-07,24;CL:0000826,3.49e-07,24;CL:0000625,3.55e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.04e-18;18!CL:0000051;4.95e-15;53!UBERON:0006215;1.09e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!4.61e-09!69;UBERON:0006238!4.61e-09!69;UBERON:0002616!1.70e-08!59;UBERON:0007023!4.12e-08!115;UBERON:0001049!7.85e-08!57;UBERON:0005068!7.85e-08!57;UBERON:0006241!7.85e-08!57;UBERON:0007135!7.85e-08!57;UBERON:0001017!1.36e-07!82;UBERON:0000073!6.10e-07!94;UBERON:0001016!6.10e-07!94;UBERON:0005743!7.79e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.78e-07;2!UBERON:0005058;1.78e-07;2!UBERON:0009113;1.78e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.36e-07,4;UBERON:0005058,1.36e-07,4;UBERON:0009113,1.36e-07,4;UBERON:0003295,1.36e-07,4;UBERON:0005562,1.36e-07,4 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0,0,0.495065411840187,0,0.672325146451775,0.602694528023977,0,0,0.246242116153576,0.816002764977012,0.626909442956176,0,0,0,0.305653622991805,0.328402357799783,0.236132343941038,0.393364276848904,0.767658796194425,0.928896739896456,0,0.30120591877825,0.369754010166788,0.852139206383318,0.995184627411951,0,0,0.200544447470142,0,0,0,0.257575567634187,0,0.377875943688809,0.485168122375632,0,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0.376484679085209,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,1.21079900526674,0.368277635987565,0,0.422510572623884,0.212604299965044,0,0.22465726229299,0.150176892841506,0,0.285012743741249,0.59675003159727,0.365328307529268,3.51992488922645,1.09227722252426,0,0.426730222566507,0.400395987036012,1.72425731986345,1.98313461835459,1.90810750907073,1.1384259382189,0.587237189370939,2.29363936875137,3.96513985737078,1.12101712596307,0.526768169550154,1.37696839079683,1.96505381374582,1.64481199199607,0.83593247695339,4.56291173287027,1.4203434172042,0,1.00269411196656,1.17842362989935,1.55073726208535,0.812411591295047,1.0247305578054,1.30059347559878,0.493313713811028,0.829050053357545,0.579606171470105,0.444859689486181,0.267540828089713,1.04535523804977,0.679856056185397,1.14966148080576,0.34362744548263,1.26509846009751,0.637130828648193,1.95325036156926,0,0.752875595388864,0.511946444617674,1.24930726552346,0.947109008176067,0,1.61285394579786,1.87208137048455,2.75166367377318,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0.378139268656271,0.221729397462564,0.263504357079378,0.523916301990851,0.364295288292542,0,0.324547393654683,0.174129737299267,0.132957960518865,1.19245312152671,1.14398982156026,1.85728750664782,0,0,0,0,0,0.275118041940067,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0,1.53316637465883,0,0.366403487860815,2.63560834872127,0,0,0,0.25326102332916,0.397227542439656,0,0,0,0,0,0.311211035399766,0.134710672069688,0,0.756787138224657,0.576175924479999,0.234321431833797,0,0,0.298897361103602,0.117434498643765,0.323745888736263,0.140450806702248,0,0.122834317311768,0,0,0,0.910161361938026,0.718618141816238,0,0.125118519871964,0,0,0,0,0,0,0,0.211931901159562,0.600182192168805,0,0,0,0,0,0,0,0.161646056818812,0,0,0.339121184620975,0,0.272746120590835,0,0,0,0,0.207322110030741,0,0,0,0,2.76269842704961,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0.34779121492523,0,0.144366447761074,0.462985512576611,0,1.58040879591855,0,0.246217006087397,0,0,0,0.16798212819886,0,0.179117045405697,0,0.383382679165211,0,0.088048434013226,0,0.144119953416961,0,0.063497894292169,0,0,0,0,0.600686115687835,0,0.336393253036082,0,0.1466765716419,0.129271715757778,0,0.845302752556,0.531876233169741,0,1.02882949704857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0.410952645100767,0,0.896681151948218,0.985153801009636,1.50939302401662,1.54011643535698,0,0,0,0.167516265334349,0,0.749007023947182,2.99161459204025,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0.468565659970853,0,0,0,0,0,0.0868836144680828,1.76221041716467,1.71571711905428,1.44737618286021,0.431428401637234,1.28073069364133,0,0,0,0,0,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0,0,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0,0.114814448164607,0.364182336013434,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0.501689773854853,0.509752546090077,1.66215201785745,0.223874754722178,0.219259876645935,0,0,0,0,0,0,0,0,1.30012049207304,1.6068392984416,0.386682873168488,0.154048617114644,0,0.275673144969061,0.107420244868274,0,0.170453254832202,0.356128142586949,0.165284915360978,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0.767693373934002,0.42793898803392,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0.551365343546124,0,0,1.15755106853338,0,0.405820753925408,0,0,0,0,0.35667105148125,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.411362273086194,0.648473311192717,0,0,0.106824071127473,0,0,0.371606350251437,0.721346064882224,0.355709216742071,0.159426272728822,0,0.5745161103971,0.635020748171649,0,0,0.228234679033192,0.156679895773023,0,0.169291777801603,0.321176150207399,0,0,0,0,0,0,0,0.278406173895242,1.23087398947712,0,0,0,0.18714054040822,0.293016358543788,0,0.445773537109913,0,0,0,0,0.994147647766298,0.562677665642051,0.111308705022906,0.494411622680279,0.422250816255987,0,0.828851746593443,0,0,0.369254416383208,0,0.359473404589307,0.179021174675609,0.511572370226872,0,0,0,0.969332746095218,0.834912883456661,0,0,0.174919999992391,0,0.341380344856499,0,0,0,0,0.173624994933292,0.885741385813839,2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| |||
|short_description=p8@TRIM8 | |||
}} |
Revision as of 04:43, 11 January 2014
Short description: | p8@TRIM8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TRIM8_5end |
Coexpression cluster: | NA |
Association with transcript: | 43bp_to_ENST00000462202_5end |
EntrezGene: | TRIM8 |
HGNC: | 15579 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.19e-23 | 52 |
lymphocyte | 4.29e-23 | 53 |
common lymphoid progenitor | 4.29e-23 | 53 |
mature alpha-beta T cell | 3.04e-19 | 18 |
alpha-beta T cell | 3.04e-19 | 18 |
immature T cell | 3.04e-19 | 18 |
mature T cell | 3.04e-19 | 18 |
immature alpha-beta T cell | 3.04e-19 | 18 |
CD4-positive, alpha-beta T cell | 1.48e-18 | 6 |
T cell | 1.48e-15 | 25 |
pro-T cell | 1.48e-15 | 25 |
leukocyte | 7.81e-13 | 136 |
hematopoietic cell | 1.19e-11 | 177 |
nongranular leukocyte | 1.86e-11 | 115 |
hematopoietic stem cell | 9.79e-11 | 168 |
B cell | 2.32e-10 | 14 |
naive T cell | 5.56e-10 | 3 |
plasmacytoid dendritic cell | 1.03e-09 | 3 |
hematopoietic lineage restricted progenitor cell | 9.30e-09 | 120 |
hematopoietic oligopotent progenitor cell | 4.84e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.84e-08 | 161 |
central nervous system pericyte | 1.56e-07 | 2 |
regulatory T cell | 1.89e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.89e-07 | 2 |
naive regulatory T cell | 1.89e-07 | 2 |
lymphocyte of B lineage | 3.49e-07 | 24 |
pro-B cell | 3.49e-07 | 24 |
CD8-positive, alpha-beta T cell | 3.55e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.36e-07 | 4 |
hemolymphoid system gland | 1.36e-07 | 4 |
thymic region | 1.36e-07 | 4 |
pharyngeal gland | 1.36e-07 | 4 |
thymus primordium | 1.36e-07 | 4 |