FFCP PHASE1:Hg19::chr12:13044488..13044506,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9052 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9836 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000537783_5end | |||
|coexpression_cluster_id=C814 | |||
|description=CAGE_peak_1_at_GPRC5A_5end | |||
|id=chr12:13044488..13044506,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.54e-34!254;CL:0000220!5.91e-12!246;CL:0002321!2.08e-11!248;CL:0000222!1.25e-10!119;CL:0000077!1.71e-10!19;CL:0000076!4.16e-09!62;CL:0002076!2.22e-07!43;CL:1000497!6.00e-07!18;CL:0002518!6.00e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.11e-10;19!CL:1000497;2.24e-07;17!CL:0002518;2.24e-07;17!CL:1000507;6.78e-07;10!CL:1000494;6.78e-07;10!CL:0000349;8.09e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.41e-34,253;CL:0002321,2.94e-11,250;CL:0000222,7.67e-11,121;CL:0000077,1.20e-10,19;CL:0000076,1.58e-08,63;CL:0002076,4.18e-08,42;CL:1000497,2.28e-07,17;CL:0002518,2.28e-07,17;CL:1000507,6.79e-07,10;CL:1000494,6.79e-07,10;CL:0000349,8.32e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.54e-08;29 | |||
|ontology_enrichment_disease=DOID:305!1.47e-17!106;DOID:0050687!1.13e-12!143;DOID:299!1.06e-07!25;DOID:1749!4.28e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;5.93e-08;25!DOID:1749;3.38e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.66e-18,106;DOID:0050687,8.88e-13,143;DOID:299,5.87e-08,25;DOID:1749,3.44e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.43e-18!238;UBERON:0009142!1.43e-18!238;UBERON:0004119!1.85e-18!169;UBERON:0000925!1.85e-18!169;UBERON:0006595!1.85e-18!169;UBERON:0000481!2.56e-16!347;UBERON:0001007!4.56e-15!155;UBERON:0001555!4.56e-15!155;UBERON:0007026!4.56e-15!155;UBERON:0002100!1.68e-14!216;UBERON:0000468!4.23e-13!659;UBERON:0004921!5.33e-13!129;UBERON:0004185!5.33e-13!129;UBERON:0000062!1.47e-12!511;UBERON:0000077!6.88e-12!130;UBERON:0000467!1.78e-11!625;UBERON:0000480!2.75e-11!626;UBERON:0001008!5.06e-11!45;UBERON:0001048!6.88e-11!168;UBERON:0006554!6.94e-11!44;UBERON:0000926!7.90e-11!448;UBERON:0004120!7.90e-11!448;UBERON:0006603!7.90e-11!448;UBERON:0003064!1.49e-10!37;UBERON:0000464!2.18e-10!104;UBERON:0000466!1.11e-09!126;UBERON:0008947!2.01e-09!38;UBERON:0003258!2.01e-09!38;UBERON:0005177!2.61e-09!107;UBERON:0005256!3.26e-09!143;UBERON:0000065!3.33e-09!53;UBERON:0000477!4.91e-09!286;UBERON:0002050!5.37e-09!605;UBERON:0005423!5.37e-09!605;UBERON:0005911!6.03e-09!82;UBERON:0000923!6.11e-09!604;UBERON:0005291!6.11e-09!604;UBERON:0006598!6.11e-09!604;UBERON:0002532!6.11e-09!604;UBERON:0005156!7.48e-09!59;UBERON:0000990!7.48e-09!59;UBERON:0000490!9.47e-09!138;UBERON:0000922!1.08e-08!612;UBERON:0003914!1.33e-08!118;UBERON:0000475!1.95e-08!365;UBERON:0009569!2.27e-08!113;UBERON:0005153!2.57e-08!37;UBERON:0000063!5.79e-08!97;UBERON:0000064!6.93e-08!219;UBERON:0000119!7.27e-08!312;UBERON:0000058!9.17e-08!26;UBERON:0001004!1.24e-07!72;UBERON:0003886!1.27e-07!63;UBERON:0005157!1.28e-07!51;UBERON:0000483!2.85e-07!309;UBERON:0004122!4.15e-07!15;UBERON:0003103!5.16e-07!69;UBERON:0001041!5.33e-07!98;UBERON:0000072!5.99e-07!46;UBERON:0000915!7.24e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;9.70e-08;44!UBERON:0006554;2.01e-07;30!UBERON:0001008;2.01e-07;30!UBERON:0004211;6.78e-07;10!UBERON:0009773;6.78e-07;10!UBERON:0001231;6.78e-07;10!UBERON:0004810;6.78e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.85e-16,160;UBERON:0000925,1.85e-16,160;UBERON:0006595,1.85e-16,160;UBERON:0002100,9.37e-15,199;UBERON:0001007,3.07e-13,145;UBERON:0001555,3.07e-13,145;UBERON:0007026,3.07e-13,145;UBERON:0001008,5.92e-12,48;UBERON:0006554,8.19e-12,47;UBERON:0004921,2.19e-11,118;UBERON:0003104,9.69e-11,160;UBERON:0009142,9.69e-11,160;UBERON:0005177,1.29e-09,101;UBERON:0008947,1.62e-09,38;UBERON:0003258,1.62e-09,38;UBERON:0000065,3.76e-09,54;UBERON:0005156,4.36e-09,59;UBERON:0000990,4.36e-09,59;UBERON:0005911,5.87e-09,82;UBERON:0009569,1.09e-08,112;UBERON:0003914,1.13e-08,117;UBERON:0001048,1.27e-08,160;UBERON:0005153,2.16e-08,37;UBERON:0005157,1.31e-07,47;UBERON:0001004,2.25e-07,74;UBERON:0000915,2.30e-07,52;UBERON:0004122,3.34e-07,15;UBERON:0003103,4.32e-07,68;UBERON:0000490,4.46e-07,148;UBERON:0003064,5.01e-07,28;UBERON:0004810,6.79e-07,10;UBERON:0000072,6.91e-07,47;UBERON:0000162,9.06e-07,14;UBERON:0001353,9.06e-07,14;UBERON:0000163,9.06e-07,14;UBERON:0006866,9.06e-07,14;UBERON:0000164,9.06e-07,14;UBERON:0000931,9.06e-07,14 | |||
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| |||
|short_description=p1@GPRC5A | |||
}} |
Revision as of 12:19, 11 January 2014
Short description: | p1@GPRC5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPRC5A_5end |
Coexpression cluster: | C814_Alveolar_mesothelioma_bile_Renal_papillotubular_papillary_serous |
Association with transcript: | 0bp_to_ENST00000537783_5end |
EntrezGene: | GPRC5A |
HGNC: | 9836 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.41e-34 | 253 |
embryonic cell | 2.94e-11 | 250 |
mesodermal cell | 7.67e-11 | 121 |
mesothelial cell | 1.20e-10 | 19 |
squamous epithelial cell | 1.58e-08 | 63 |
endo-epithelial cell | 4.18e-08 | 42 |
kidney cell | 2.28e-07 | 17 |
kidney epithelial cell | 2.28e-07 | 17 |
kidney tubule cell | 6.79e-07 | 10 |
nephron tubule epithelial cell | 6.79e-07 | 10 |
extraembryonic cell | 8.32e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.66e-18 | 106 |
cell type cancer | 8.88e-13 | 143 |
adenocarcinoma | 5.87e-08 | 25 |
squamous cell carcinoma | 3.44e-07 | 14 |