FFCP PHASE1:Hg19::chr12:49525175..49525180,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10376 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18809 | |||
|TSSclassifier=strong | |||
|UniProt=P68363,E7ET24,F8VX09,F8VU66,F8VVB9,F8VRK0 | |||
|association_with_transcript=0bp_to_ENST00000332858,ENST00000336023,ENST00000429203,ENST00000547476,ENST00000547765,ENST00000550367,ENST00000551324,ENST00000552984,uc001rtl.2_5end | |||
|description=CAGE_peak_1_at_TUBA1B_5end | |||
|id=chr12:49525175..49525180,- | |||
|ontology_enrichment_celltype=CL:0000055!2.73e-18!180;CL:0000222!6.86e-15!119;CL:0002321!1.05e-12!248;CL:0000220!1.07e-12!246;CL:0000548!2.67e-12!679;CL:0000004!2.67e-12!679;CL:0000255!2.67e-12!679;CL:0000012!6.67e-12!682;CL:0000144!1.15e-10!625;CL:0002371!1.34e-09!591;CL:0000393!1.92e-09!60;CL:0000211!1.92e-09!60;CL:0000183!5.42e-09!59;CL:0000187!1.87e-08!54;CL:0000680!2.06e-08!57;CL:0000056!2.06e-08!57;CL:0000355!2.06e-08!57;CL:0000057!2.37e-08!75;CL:0000192!6.12e-08!42;CL:0000514!6.12e-08!42;CL:1000497!1.99e-07!18;CL:0002518!1.99e-07!18;CL:1000449!2.90e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.13e-08;17!CL:0002518;3.13e-08;17!CL:1000449;3.97e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,7.97e-15,121;CL:0002321,9.85e-13,250;CL:0000393,4.75e-09,61;CL:0000211,4.75e-09,61;CL:1000497,3.15e-08,17;CL:0002518,3.15e-08,17;CL:0000057,3.64e-08,76;CL:1000449,4.00e-08,15;CL:0000187,4.54e-08,55;CL:0000680,4.84e-08,58;CL:0000056,4.84e-08,58;CL:0000355,4.84e-08,58;CL:0000192,1.65e-07,43;CL:0000514,1.65e-07,43;CL:0000115,5.95e-07,36;CL:0000213,7.50e-07,58;CL:0000215,7.50e-07,58;CL:0002078,9.24e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!2.44e-08!51;DOID:0060083!2.44e-08!51;DOID:1240!2.71e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.44e-08,51;DOID:0060083,2.44e-08,51;DOID:1240,2.71e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000119!1.61e-15!312;UBERON:0000483!1.43e-14!309;UBERON:0000475!6.71e-10!365;UBERON:0000025!2.48e-09!194;UBERON:0002049!2.52e-09!79;UBERON:0007798!2.52e-09!79;UBERON:0001981!1.04e-08!60;UBERON:0007500!1.04e-08!60;UBERON:0004537!1.04e-08!60;UBERON:0006965!1.04e-08!60;UBERON:0003914!1.40e-08!118;UBERON:0000914!1.60e-08!83;UBERON:0002329!1.60e-08!83;UBERON:0003077!1.60e-08!83;UBERON:0003059!1.60e-08!83;UBERON:0007282!1.60e-08!83;UBERON:0009618!1.60e-08!83;UBERON:0007285!1.60e-08!83;UBERON:0005256!2.07e-08!143;UBERON:0000055!2.26e-08!69;UBERON:0004290!2.70e-08!70;UBERON:0004872!5.47e-08!84;UBERON:0001637!7.82e-08!42;UBERON:0003509!7.82e-08!42;UBERON:0004572!7.82e-08!42;UBERON:0000490!1.27e-07!138;UBERON:0000477!2.02e-07!286;UBERON:0000486!2.57e-07!82;UBERON:0004211!2.90e-07!16;UBERON:0001285!2.90e-07!16;UBERON:0007684!2.90e-07!16;UBERON:0003220!2.90e-07!16;UBERON:0004208!2.90e-07!16;UBERON:0000064!3.81e-07!219;UBERON:0001134!9.89e-07!61;UBERON:0002036!9.89e-07!61;UBERON:0003082!9.89e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.97e-08;15!UBERON:0004819;3.97e-08;15!UBERON:0001285;3.97e-08;15!UBERON:0007684;3.97e-08;15!UBERON:0003914;6.52e-08;74!UBERON:0007500;7.81e-07;56!UBERON:0001981;7.81e-07;56!UBERON:0004537;7.81e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.01e-15,309;UBERON:0000483,2.62e-14,306;UBERON:0007503,3.41e-10,78;UBERON:0000025,9.52e-10,192;UBERON:0002049,1.58e-09,78;UBERON:0007798,1.58e-09,78;UBERON:0007500,6.02e-09,59;UBERON:0001981,6.02e-09,59;UBERON:0004537,6.02e-09,59;UBERON:0006965,6.02e-09,59;UBERON:0003914,7.86e-09,117;UBERON:0000490,8.38e-09,148;UBERON:0000055,1.41e-08,68;UBERON:0004872,3.69e-08,83;UBERON:0004211,4.00e-08,15;UBERON:0009773,4.00e-08,15;UBERON:0001231,4.00e-08,15;UBERON:0001285,4.00e-08,15;UBERON:0007684,4.00e-08,15;UBERON:0004208,4.00e-08,15;UBERON:0003077,5.05e-08,72;UBERON:0007285,5.05e-08,72;UBERON:0002329,5.69e-08,71;UBERON:0003059,5.69e-08,71;UBERON:0007282,5.69e-08,71;UBERON:0004290,5.69e-08,71;UBERON:0009618,5.69e-08,71;UBERON:0007524,7.27e-08,73;UBERON:0001637,7.82e-08,42;UBERON:0003509,7.82e-08,42;UBERON:0004572,7.82e-08,42;UBERON:0006555,4.49e-07,16;UBERON:0004819,4.49e-07,16;UBERON:0000486,4.76e-07,83 | |||
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| |||
|short_description=p1@TUBA1B | |||
}} |
Revision as of 13:18, 11 January 2014
Short description: | p1@TUBA1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TUBA1B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000332858, ENST00000336023, ENST00000429203, ENST00000547476, ENST00000547765, ENST00000550367, ENST00000551324, ENST00000552984, uc001rtl.2_5end |
EntrezGene: | TUBA1B |
HGNC: | 18809 |
UniProt: | P68363E7ET24F8VX09F8VU66F8VVB9F8VRK0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 7.97e-15 | 121 |
embryonic cell | 9.85e-13 | 250 |
electrically responsive cell | 4.75e-09 | 61 |
electrically active cell | 4.75e-09 | 61 |
kidney cell | 3.15e-08 | 17 |
kidney epithelial cell | 3.15e-08 | 17 |
fibroblast | 3.64e-08 | 76 |
epithelial cell of nephron | 4.00e-08 | 15 |
muscle cell | 4.54e-08 | 55 |
muscle precursor cell | 4.84e-08 | 58 |
myoblast | 4.84e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.84e-08 | 58 |
smooth muscle cell | 1.65e-07 | 43 |
smooth muscle myoblast | 1.65e-07 | 43 |
endothelial cell | 5.95e-07 | 36 |
lining cell | 7.50e-07 | 58 |
barrier cell | 7.50e-07 | 58 |
meso-epithelial cell | 9.24e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
cell layer | 3.01e-15 | 309 |
epithelium | 2.62e-14 | 306 |
epithelial vesicle | 3.41e-10 | 78 |
tube | 9.52e-10 | 192 |
vasculature | 1.58e-09 | 78 |
vascular system | 1.58e-09 | 78 |
epithelial tube open at both ends | 6.02e-09 | 59 |
blood vessel | 6.02e-09 | 59 |
blood vasculature | 6.02e-09 | 59 |
vascular cord | 6.02e-09 | 59 |
epithelial tube | 7.86e-09 | 117 |
unilaminar epithelium | 8.38e-09 | 148 |
vessel | 1.41e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 3.69e-08 | 83 |
nephron epithelium | 4.00e-08 | 15 |
renal tubule | 4.00e-08 | 15 |
nephron tubule | 4.00e-08 | 15 |
nephron | 4.00e-08 | 15 |
uriniferous tubule | 4.00e-08 | 15 |
nephrogenic mesenchyme | 4.00e-08 | 15 |
paraxial mesoderm | 5.05e-08 | 72 |
presumptive paraxial mesoderm | 5.05e-08 | 72 |
somite | 5.69e-08 | 71 |
presomitic mesoderm | 5.69e-08 | 71 |
presumptive segmental plate | 5.69e-08 | 71 |
dermomyotome | 5.69e-08 | 71 |
trunk paraxial mesoderm | 5.69e-08 | 71 |
dense mesenchyme tissue | 7.27e-08 | 73 |
artery | 7.82e-08 | 42 |
arterial blood vessel | 7.82e-08 | 42 |
arterial system | 7.82e-08 | 42 |
excretory tube | 4.49e-07 | 16 |
kidney epithelium | 4.49e-07 | 16 |
multilaminar epithelium | 4.76e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.44e-08 | 51 |
immune system cancer | 2.44e-08 | 51 |
leukemia | 2.71e-07 | 39 |