FFCP PHASE1:Hg19::chr12:117319236..117319252,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8739 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5185 | |||
|TSSclassifier=strong | |||
|UniProt=O00198 | |||
|association_with_transcript=-4bp_to_ENST00000257572,NM_003806,uc001twe.2_5end | |||
|description=CAGE_peak_1_at_HRK_5end | |||
|id=chr12:117319236..117319252,- | |||
|ontology_enrichment_celltype=CL:0000148!2.21e-09!10;CL:0000541!2.21e-09!10;CL:0000236!5.21e-09!14;CL:0000147!1.03e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.59e-15;10!CL:0000236;5.28e-11;13!CL:0000147;2.68e-10;14!CL:0000039;1.30e-09;7!CL:0000586;1.30e-09;7!CL:0000945;2.81e-09;24!CL:0002567;4.41e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.00e-15,10;CL:0000541,2.00e-15,10;CL:0000147,2.25e-10,14;CL:0000236,5.36e-10,14;CL:0000039,8.75e-10,7;CL:0000586,8.75e-10,7;CL:0000945,3.15e-09,24;CL:0000826,3.15e-09,24;CL:0002567,4.40e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!7.83e-18!143;DOID:305!7.14e-12!106;DOID:162!4.54e-10!235;DOID:14566!4.69e-10!239;DOID:3095!2.40e-08!22;DOID:2994!2.40e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.42e-09;22!DOID:2994;1.42e-09;22!DOID:169;3.11e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.73e-14,143;DOID:3095,1.15e-09,22;DOID:2994,1.15e-09,22;DOID:162,8.15e-09,235;DOID:14566,2.33e-08,239;DOID:305,4.20e-08,106;DOID:169,3.27e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.84e-19!94;UBERON:0001016!2.84e-19!94;UBERON:0005743!8.64e-17!86;UBERON:0001017!6.75e-16!82;UBERON:0007023!3.03e-15!115;UBERON:0001049!4.47e-15!57;UBERON:0005068!4.47e-15!57;UBERON:0006241!4.47e-15!57;UBERON:0007135!4.47e-15!57;UBERON:0003080!1.55e-14!42;UBERON:0002780!7.38e-14!41;UBERON:0001890!7.38e-14!41;UBERON:0006240!7.38e-14!41;UBERON:0002616!2.20e-12!59;UBERON:0000955!2.25e-12!69;UBERON:0006238!2.25e-12!69;UBERON:0001893!1.27e-11!34;UBERON:0002020!3.39e-11!34;UBERON:0003528!3.39e-11!34;UBERON:0002791!4.04e-11!33;UBERON:0002619!4.90e-11!22;UBERON:0002346!6.77e-11!90;UBERON:0001869!7.45e-11!32;UBERON:0003075!3.32e-10!86;UBERON:0007284!3.32e-10!86;UBERON:0003056!1.31e-09!61;UBERON:0001950!1.84e-09!20;UBERON:0000956!7.09e-09!25;UBERON:0000203!7.09e-09!25;UBERON:0000924!3.56e-08!173;UBERON:0006601!3.56e-08!173;UBERON:0004121!1.29e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.06e-09;22!UBERON:0000349;1.49e-09;5!UBERON:0002780;2.87e-08;41!UBERON:0001890;2.87e-08;41!UBERON:0000956;3.13e-08;25!UBERON:0000203;3.13e-08;25!UBERON:0001893;2.02e-07;34!UBERON:0001869;2.11e-07;32!UBERON:0001950;2.79e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,5.85e-10,22;UBERON:0002780,8.10e-10,41;UBERON:0001890,8.10e-10,41;UBERON:0003080,8.10e-10,41;UBERON:0006240,8.10e-10,41;UBERON:0000349,1.22e-09,5;UBERON:0001016,1.33e-09,89;UBERON:0000073,1.57e-08,53;UBERON:0002616,1.57e-08,53;UBERON:0001893,1.77e-08,34;UBERON:0000956,1.89e-08,25;UBERON:0000203,1.89e-08,25;UBERON:0001869,4.37e-08,32;UBERON:0001017,6.90e-08,81;UBERON:0001049,8.19e-08,56;UBERON:0005068,8.19e-08,56;UBERON:0006241,8.19e-08,56;UBERON:0007135,8.19e-08,56;UBERON:0001950,1.65e-07,20;UBERON:0002791,4.99e-07,32;UBERON:0000955,5.86e-07,68;UBERON:0006238,5.86e-07,68 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0,0,7.66925285744986,2.55904618477359,0.880801318004542,0,0,0.217010870715852,0,0,0,0,0,0,0,0.822335776043652,0,0,0,0,0,0,1.35426486594342,0.188242339542605,0,0,0,0.320929027076094,0,0,0.398927315243264,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18455444504853,0.889509253863555,2.13365111283254,2.40237592221607,4.02326707968138,0.661044872784862,4.77026877267682,5.12291672198504,4.69789751496751,8.02773779062981,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46368447355514,0.662648841607426,1.85910308591229,4.45742536566093,0.504641701751257,0.36497735907583,0,0,0,0,0,0.473227200159376,0,0.241011029883482,0.330881918197182,0.217879444092406,0,0,0,1.15424147083917,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0,0,0.651616610620649,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0.468008530278475,0.445893486866185,0,0,0,0,0,0,0,0,0,0.144119953416961,0,4.00036734040665,11.0776643411901,3.51652341630141,8.55362230113526,9.15164685059579,6.9078903304101,8.28896654628677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,2.61460037580088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.8083912314573,2.31986643833309,0.502548796003046,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0,0.106727557803444,0.303127571446259,0,0.30239029332968,0,0,0.280660094433074,0.256278298511402,0,0,0,0,0,0,0,0,0.241718899183244,0,0.828728900423067,0,0,0,2.25599806453706,0.308061348417659,0,0,0,0,0,0,0,0,0,0.509752546090077,4.98645605357235,0,0,0,0.256450125116389,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,1.70894156152249,0.238231775457789,0.822724546172388,0.648473311192717,1.08006287447623,0.79312517629427,0.640944426764839,0.962479855263359,0.980160863924127,0.185803175125719,0.721346064882224,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.23874448473769,0,0,1.9882952955326,7.59614848616769,0.111308705022906,0,0,0.398495976502139,0.828851746593443,0.755798243562828,0.511343412510774,0,0,0.179736702294654,0.358042349351218,0,0,0,0,0,0.556608588971108,1.99613798001194,6.51069402713083,0.0874599999961957,2.89999830173917,0.682760689712998,0,0,0.344743373241465,0.291604613383254,1.38899995946634,0.885741385813839,0.844175070377856,0,0.110579259931225,0.295547618953547,1.09692698576986,1.63407695278485,5.29810228258692,0,2.16489906109302,3.91958637459702,0.359030577639089,2.82483166997221,0.638002319463839,0.641183153813036,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0.865554558968364,0,0,0.611030144933625,0.296521128680622,0.494255755786011,0.313265848516366,1.07841812769083,0,0.468528891450678,43.7891494117598,3.52196314077761,0.971121518136371,0,1.20990716048664,0.30607276163049,0.126373159256976,5.56196651833622,0.518440956986236,1.32930774541437,0.992975867626496,0.941798755221676,0,0,1.24807205711825,0,0.293977192243133,2.69883540399248,0.17472666824203,1.20390222730132,0.483781656445426,1.24251839046515,0.410577285266046,0,1.85337866052151,0,0,0,1.89932387867636,2.54216797555244,0.0801588202515337,0,1.79828648623917,3.89044126316086,1.25990255782507,0.171594997861965,0,2.48505071130865,2.12124631155116,0,0.313808538937,0,0,0,0.684526894459965,0,0,0,0,0.458320848023367,0,0.798716001995964,0,0.223171457441873,3.56072404179649,0,1.16495949527454,0,0,0,2.85439696392771,0,8.74752658790234,5.0395260261283,0.803765742325096,0.962776056180637,0.415440338029185,0,0,1.94398581305679,0.670869375198532,0.157611414598396,0.104909176269996,0,0,0.767660789277781,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0.387848869084652,0.52893040697076,0.855434189421647,0,0.320362237703084,0,0.828478110694391,0.992332043623902,0,0,18.5118964753353,0,0,0,0,1.88464915500281,0.886068179966986,0.732157589411779,2.003054891304,3.44045517414043,1.77486482458964,0.620964029413834,2.07522952404346,0,2.42638588066636,1.42732666772484,0,0,7.68081451637373,0,0,0,0,0.251567901752575,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0,0,0,6.54907423384831,0,0.521988583930423,0,0,0.97894681802587,0,0,0,1.59020231351293,0.38582807654183,0,1.28120759293973,1.72715170865599,0,0.829550616910385,0.194860308839388,0,0,0.655219697692825,2.70350199629091,0.211312123358627,0,1.28030075632969,3.2720846135555,0,0.920529751259204,0,0,3.19735928259129,0.431299245586727,1.72992536041486,6.22494937694479,0,0.850299680406731,4.95743057036009,1.67593475391973,0,0.0788617450012534,0,0,0,1.22035527683273,0,0.798169295285756,1.43581454968528,0.252071696221718,1.24483054435592,0.645902582527404,0,0,1.41563668017288,1.28400018965175,9.81968162277875,0,0,0,0.225630985047772,0.60511520611056,0,0.785720083444267,0.327543835020193,0.147856086217045,1.08060135389431,0,0.413373593002368,1.77564268542939,0.546974809018219,1.09651553371436,0,0.175871244359621,2.6830109804315,1.60710550763486,0.672567444437648,6.67662164660295,2.04895972216168,0.177404740325278,0.345701962667338,0,0.475788130837822,1.51277379194553,0,0,0.078493092850514,0.471346769748006,0.560544326627578,0.913158720509496,0,0,0.0714765441766563,0.316027223465453,0.464965701472501,0,0,0,0,0,0,0.709992004383392,0.681707238073262,0,1.8328549483524,3.1020638566432,0,0.111855431797792,0,0,0,0.205325613712494,0,0,0.467878926924211,0.397901550322736,0.118920090777569,1.6941912305844,0.769583617218004,28.5319774341013,0,0.218559560503957,0,0,1.17838273550813,0.392616934229891,0.891139200981258,0,0,0.187967835959707,0.45120521581504,0,3.57107877211315,0,0.481448200135009,0,0,0.430018749454354,0,1.76777874496378,0.872701380680755,0,0,0,0,0.252332849670158,0.764859003745869,0,3.3656313814854,6.94765253690457,16.4491870167372,1.75495277504663,0.606229585745915,0,0,0.413731983447581,0,0,1.0334225573761,2.04846557176331,0.672791175483681,1.14564884900697,0,0.217716747896961,0,0.5388164241167,0.573777643141411,0.332660356546013,0.488419611665847,0.213454691755431,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p1@HRK | |||
}} |
Revision as of 16:08, 11 January 2014
Short description: | p1@HRK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HRK_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENST00000257572, NM_003806, uc001twe.2_5end |
EntrezGene: | HRK |
HGNC: | 5185 |
UniProt: | O00198 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.00e-15 | 10 |
melanoblast | 2.00e-15 | 10 |
pigment cell | 2.25e-10 | 14 |
B cell | 5.36e-10 | 14 |
germ line cell | 8.75e-10 | 7 |
germ cell | 8.75e-10 | 7 |
lymphocyte of B lineage | 3.15e-09 | 24 |
pro-B cell | 3.15e-09 | 24 |
light melanocyte | 4.40e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 5.85e-10 | 22 |
regional part of forebrain | 8.10e-10 | 41 |
forebrain | 8.10e-10 | 41 |
anterior neural tube | 8.10e-10 | 41 |
future forebrain | 8.10e-10 | 41 |
limbic system | 1.22e-09 | 5 |
nervous system | 1.33e-09 | 89 |
regional part of nervous system | 1.57e-08 | 53 |
regional part of brain | 1.57e-08 | 53 |
telencephalon | 1.77e-08 | 34 |
cerebral cortex | 1.89e-08 | 25 |
pallium | 1.89e-08 | 25 |
cerebral hemisphere | 4.37e-08 | 32 |
central nervous system | 6.90e-08 | 81 |
neural tube | 8.19e-08 | 56 |
neural rod | 8.19e-08 | 56 |
future spinal cord | 8.19e-08 | 56 |
neural keel | 8.19e-08 | 56 |
neocortex | 1.65e-07 | 20 |
regional part of telencephalon | 4.99e-07 | 32 |
brain | 5.86e-07 | 68 |
future brain | 5.86e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.73e-14 | 143 |
germ cell and embryonal cancer | 1.15e-09 | 22 |
germ cell cancer | 1.15e-09 | 22 |
cancer | 8.15e-09 | 235 |
disease of cellular proliferation | 2.33e-08 | 239 |
carcinoma | 4.20e-08 | 106 |
neuroendocrine tumor | 3.27e-07 | 6 |