FFCP PHASE1:Hg19::chr15:41186727..41186758,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57617 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15972 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=62bp_to_ENST00000558474_5end | |||
|description=CAGE_peak_3_at_VPS18_5end | |||
|id=chr15:41186727..41186758,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.61e-29!254;CL:0002076!1.64e-12!43;CL:0000223!2.35e-11!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.87e-12;42!CL:0002368;1.12e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.56e-28,253;CL:0002076,1.16e-16,42;CL:0000223,2.08e-11,58;CL:0002368,9.29e-09,13 | |||
|ontology_enrichment_development_v019=CL:0000223;9.63e-07;58 | |||
|ontology_enrichment_disease=DOID:305!2.54e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.00e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.99e-11!169;UBERON:0000925!1.99e-11!169;UBERON:0006595!1.99e-11!169;UBERON:0001004!4.04e-11!72;UBERON:0000481!2.65e-10!347;UBERON:0000062!3.31e-10!511;UBERON:0000065!2.07e-09!53;UBERON:0004921!8.14e-09!129;UBERON:0004185!8.14e-09!129;UBERON:0000922!9.50e-09!612;UBERON:0000064!1.54e-08!219;UBERON:0000483!2.28e-08!309;UBERON:0001007!4.22e-08!155;UBERON:0001555!4.22e-08!155;UBERON:0007026!4.22e-08!155;UBERON:0001041!4.43e-08!98;UBERON:0008947!6.24e-08!38;UBERON:0003258!6.24e-08!38;UBERON:0001048!7.32e-08!168;UBERON:0000119!9.44e-08!312;UBERON:0000077!1.16e-07!130;UBERON:0000072!1.23e-07!46;UBERON:0000467!1.29e-07!625;UBERON:0004111!1.63e-07!241;UBERON:0000480!2.09e-07!626;UBERON:0000923!2.51e-07!604;UBERON:0005291!2.51e-07!604;UBERON:0006598!2.51e-07!604;UBERON:0002532!2.51e-07!604;UBERON:0000468!3.17e-07!659;UBERON:0000063!3.61e-07!97;UBERON:0002050!3.99e-07!605;UBERON:0005423!3.99e-07!605;UBERON:0005911!4.06e-07!82;UBERON:0000477!8.72e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;2.53e-09;44!UBERON:0000072;1.20e-08;37!UBERON:0001041;3.66e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.56e-15,160;UBERON:0000925,7.56e-15,160;UBERON:0006595,7.56e-15,160;UBERON:0001041,6.30e-13,87;UBERON:0001004,2.96e-12,74;UBERON:0004921,6.41e-12,118;UBERON:0000065,1.65e-11,54;UBERON:0001007,5.31e-11,145;UBERON:0001555,5.31e-11,145;UBERON:0007026,5.31e-11,145;UBERON:0008947,4.25e-10,38;UBERON:0003258,4.25e-10,38;UBERON:0000072,3.47e-09,47;UBERON:0001048,3.53e-08,160;UBERON:0000922,2.60e-07,592;UBERON:0005178,2.96e-07,34;UBERON:0002224,2.96e-07,34;UBERON:0005911,4.21e-07,82;UBERON:0006554,4.58e-07,47;UBERON:0005181,7.67e-07,35;UBERON:0001737,8.50e-07,9;UBERON:0001008,9.73e-07,48 | |||
|phase1_expression=1.09007027562334,0.428201047781966,0.140954404095971,0,0.446961094427288,0,0,0,0,2.94880723801811,4.88460817580699,1.09220686065086,2.11013582582763,0.247532705920093,1.98838425436749,0,0.602694528023977,0.730310090387373,0.487932798790507,0.246242116153576,0.408001382488506,0.940364164434263,0.572471974262113,0.821246550437305,0.502170558379211,0.382067028739756,0.328402357799783,0.472264687882075,2.36018566109342,1.15148819429164,1.23852898652861,5.51652734687356,3.0120591877825,2.9580320813343,0.0774672005803016,0,0,0,0.401088894940283,0.434021741431704,0,0,0,0.290796477559129,0.377875943688809,0,1.16214518452842,1.6446715520873,3.71647645074124,0.28769239232215,0,1.6553756092201,1.37898272294647,1.29096936716765,4.06279459783025,0,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,1.91801137739712,0,0.398927315243264,0,0.290209238628584,1.13477044938228,1.86846674698672,1.00499466102697,0.521482918420201,4.12658804939722,0,0,0.632924774881769,0.211255286311942,0.637812899895131,1.04829322754188,0.561643155732475,0,0.32145117339416,0.285012743741249,0.19891667719909,0.365328307529268,0,0.546138611262131,0.889509253863555,0.426730222566507,0,0.574752439954483,0.661044872784862,0,1.1384259382189,0.587237189370939,1.52909291250092,0,0.560508562981536,0.263384084775077,1.37696839079683,0.786021525498329,0.616804496998528,0.334372990781356,0.32592226663359,0,0,0.111410456885174,0.883817722424512,0.886135578334485,0.270803863765016,0.25618263945135,0,0.164437904603676,0,0.289803085735052,0,0.535081656179426,0,0,0,0.34362744548263,0.253019692019503,0.318565414324097,0,0.950452044448374,0.301150238155546,0,0,0.236777252044017,0,0.604820229674197,0.802320587350522,0.434473211648397,0,0.670700859703636,0.767175371061182,0.361439152384566,1.50401373190767,0,0,0.486634870302636,0.472674085820339,0.665188192387692,0.43917392846563,1.70272798147026,2.18577172975525,4.07862887062872,0,0.174129737299267,0.26591592103773,0.476981248610684,0.571994910780128,1.48583000531826,0.198762407366705,0.860234595106124,0.694281003215189,2.26123176769604,0.838998872419812,1.10047216776027,0.835979866147242,0.775250277507987,1.42306505074684,0,0.402829317109147,0.760272105718513,1.22031028774085,0.367663080345869,0.81014194788176,0.17859945656816,0,0.112611480483322,1.53316637465883,0,0.183201743930407,7.9068250461638,7.75560528296651,6.54141078213801,0,0.379891534993739,0.794455084879313,0.286836620748814,0.354668382198357,0.560677600142307,2.1349799145941,0.49333509683432,0.311211035399766,0.404132016209064,0.163461903113459,0.151357427644931,0,0.234321431833797,0.624320153660641,1.71141546463335,0.298897361103602,0,0,0,0,0.245668634623536,0,1.18800285728205,0.741800787835671,0,0,0,0,0,0,0,0,0.567160915800105,0,0.213557388818567,0,0.600182192168805,0.103052529238439,0,0,0.168776332241266,0.389748020644795,0.252433774244115,0.276149695926898,0,0,0.201504196455281,0.339121184620975,4.83152132908242,1.63647672354501,2.29443676311203,2.80539524098069,2.38553582978673,2.5562667431294,2.90250954043037,7.0649838245176,2.18986415445498,0,0,0,0,0,2.12952240071719,2.69735504124963,1.92808823906786,2.86764329104224,2.39667388501647,1.89816495288877,2.42696354688296,3.13954344200554,2.69323009862473,0.738155454624648,1.40241773803446,2.8810180793198,1.47008711385542,5.07020139287323,0.982827216677626,1.18157981336281,0.441463099414651,3.56666471775029,1.71567810298526,6.58501712451753,6.74410519545717,1.00528972411631,2.40729957412177,0,0,1.44331342025273,0.579652024875384,0.70445216541493,0.866198686566443,0.462985512576611,0,5.53143078571493,1.71697232418975,0,1.17002132569619,1.0404181360211,6.56136837907439,3.35964256397719,2.41017665312057,2.05984602216551,2.03443756959773,4.60059214998253,0,0,0.207328115540772,0.288239906833923,0.37872730027914,0.253991577168676,2.29193055334967,3.51652341630141,3.4214489204541,0.411309970813294,0.600686115687835,1.14330573052231,0,0,0.07333828582095,0.904902010304444,0,0,1.32969058292435,2.08014873822732,0,0,0.532844358032199,0.428933980974443,0.542621605391443,0,0.325736184293735,0,0,6.33022691825131,4.35766729300147,5.59848750619519,0,0,0,0.239624855491583,1.14861935834114,0,0.434343920002738,0.205476322550383,0.358121926479791,0.112085143993527,0.985153801009636,0.431255149719035,1.28343036279748,0.508189248444927,2.60279707715243,0.773288812777695,0.335032530668698,0,3.74503511973591,0,0.828831026872071,0.24538298343828,0,0.542530047399471,0.415941723061614,0.713715955188647,0,0.234282829985426,0.300946099727719,0,0,0,1.10621501125022,0.173767228936166,0.587403472388222,0,0.413536052245775,0.215714200818617,0.853820462427555,5.75942385747893,1.66435439510497,0.907170879989041,0.248107807818777,0.153461973288062,0,0.256278298511402,0,0.160853921143607,2.96836132889982,0.308419387605311,0.532685175939381,0.410635780069046,0,0.464841513839837,2.90062679019893,4.61164881697555,2.4861867012692,0.229628896329213,0.364182336013434,0.917870904715969,2.70719767744447,1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|short_description=p3@VPS18 | |||
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Revision as of 23:03, 11 January 2014
Short description: | p3@VPS18 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VPS18_5end |
Coexpression cluster: | NA |
Association with transcript: | 62bp_to_ENST00000558474_5end |
EntrezGene: | VPS18 |
HGNC: | 15972 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.56e-28 | 253 |
endo-epithelial cell | 1.16e-16 | 42 |
endodermal cell | 2.08e-11 | 58 |
respiratory epithelial cell | 9.29e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.56e-15 | 160 |
endoderm | 7.56e-15 | 160 |
presumptive endoderm | 7.56e-15 | 160 |
foregut | 6.30e-13 | 87 |
respiratory system | 2.96e-12 | 74 |
subdivision of digestive tract | 6.41e-12 | 118 |
respiratory tract | 1.65e-11 | 54 |
digestive system | 5.31e-11 | 145 |
digestive tract | 5.31e-11 | 145 |
primitive gut | 5.31e-11 | 145 |
respiratory primordium | 4.25e-10 | 38 |
endoderm of foregut | 4.25e-10 | 38 |
segment of respiratory tract | 3.47e-09 | 47 |
primordium | 3.53e-08 | 160 |
embryo | 2.60e-07 | 592 |
thoracic cavity element | 2.96e-07 | 34 |
thoracic cavity | 2.96e-07 | 34 |
endo-epithelium | 4.21e-07 | 82 |
urinary system structure | 4.58e-07 | 47 |
thoracic segment organ | 7.67e-07 | 35 |
larynx | 8.50e-07 | 9 |
renal system | 9.73e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.00e-08 | 106 |